View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0197_1D_low_20 (Length: 216)
Name: NF0197_1D_low_20
Description: NF0197_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0197_1D_low_20 |
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Alignment Details
Target: chr6 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 18 - 214
Target Start/End: Original strand, 16438208 - 16438403
Alignment:
| Q |
18 |
acatcaacacaaaaatggcagcgacagtggagattgatccaaatcgaaggtgacaaagagcagataaagaaagagaaacaaaacaaacccccaaaaatgg |
117 |
Q |
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| T |
16438208 |
acatcaacacaaaaatggcagcgactttggagatggatccaaatcgaaggtaacaaag-gtagacaaagaaagaaaaacaaaacaaaccctcaaaaatgg |
16438306 |
T |
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| Q |
118 |
aatcaacccgcaaactcgtcatcatcacttcaaccaaaattcaccaccacgctcaaaatcaccattaaaattcaaactcccaacccaacaacaccaa |
214 |
Q |
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| T |
16438307 |
aaccaacccacaaactcctcatcatcacttcaaccaaaattcaccaccacgctcaaaatcaccattaaaattcaaacttctaacccaacaacaccaa |
16438403 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 138 - 214
Target Start/End: Original strand, 39041731 - 39041807
Alignment:
| Q |
138 |
atcatcacttcaaccaaaattcaccaccacgctcaaaatcaccattaaaattcaaactcccaacccaacaacaccaa |
214 |
Q |
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|||||||| |||||||||||||||||||| | ||| ||||| ||||| |||| |||||||| |||||| |||||| |
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| T |
39041731 |
atcatcaccacaaccaaaattcaccaccacacacaagatcacaattaacattccaactcccagtccaacatcaccaa |
39041807 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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