View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0197_1D_low_3 (Length: 529)
Name: NF0197_1D_low_3
Description: NF0197_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0197_1D_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 285; Significance: 1e-159; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 183 - 506
Target Start/End: Original strand, 8036190 - 8036514
Alignment:
| Q |
183 |
tacgtagtcttgatattgtttcgttgaggacggtaaacaaccatcaaataaccgtcaaagtgacctgttataccttcctcgtttggttcacccgaaataa |
282 |
Q |
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| T |
8036190 |
tacgtagtcttgatattgtttcgttgaggacggtaaacaaccattaaataaccgtcaaagtggcctgttataccttcctcgtttggttcacccgaaataa |
8036289 |
T |
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| Q |
283 |
acattaaataatatataatactactacttgaaaacaccatagaccaaagttattgtaaagtttgaaaaaccttgtggattagtagta-tttactcaaaca |
381 |
Q |
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| T |
8036290 |
acattaatttatatataatactactacttgaaaacaccatagaccaaagttattgtaaaatttgaaaaaccttgtgtattagtagtattttacttaaaca |
8036389 |
T |
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| Q |
382 |
ttctagtgagatcagaaacaacaaagctggttgataatttctccatggttaagaaaactgtgttgaaggttaatatcgattgtccaaaatgcaaaaagaa |
481 |
Q |
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| T |
8036390 |
ttctagtgagatcagaaacaacaaagctggttgataatttctccatggttaagaaaactgtattgaaggttaatatcgattgtccaaaatgcaaaaagaa |
8036489 |
T |
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| Q |
482 |
actcatcaaaactgtctcttctctt |
506 |
Q |
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| T |
8036490 |
actcatcaaaactgtctcttctctt |
8036514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 103; E-Value: 5e-51
Query Start/End: Original strand, 18 - 140
Target Start/End: Original strand, 8036023 - 8036144
Alignment:
| Q |
18 |
taattatttagagtaattccatttctgttttcaagcaacgattatgcaagttgctcaaaatcacaaaaggcaattactatcaccgtattcaaaaaaccaa |
117 |
Q |
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| T |
8036023 |
taattatttagagtaattccatttctgttttcaagca-ctataatgcaagttgctcaaaatcacaaaaggcaattactatcaccgtattcaaaaaaccaa |
8036121 |
T |
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| Q |
118 |
taaggatgattgaaacattatta |
140 |
Q |
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| T |
8036122 |
taaggatgatttaaacattatta |
8036144 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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