View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0197_1D_low_5 (Length: 498)
Name: NF0197_1D_low_5
Description: NF0197_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0197_1D_low_5 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 193; Significance: 1e-105; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 149 - 361
Target Start/End: Original strand, 24864804 - 24865016
Alignment:
| Q |
149 |
aatccaaaagaagaggaagatcccatctttatagctacattatactgaagccaagaaagcattagctacccttcaattagaggctactataataaagaac |
248 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24864804 |
aatccaaaagaagaggaagatcccatttttatagctacattatactgaagccaagaaagcattagctacccttcaattagaggctactataataaagaac |
24864903 |
T |
|
| Q |
249 |
ttctagaaagatctgcatatccaaagataacctaccctgcacctgtaaatttggagaaaaagagaagtgaaatggggtgagtcagaattgtgaattctaa |
348 |
Q |
| |
|
||||||||||||||||| ||||||||||||||||||||| |||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
24864904 |
ttctagaaagatctgcaaatccaaagataacctaccctgtacctgtaattttggagaaaaagagaagggaaatggggtgagtcagaattgtgaattctaa |
24865003 |
T |
|
| Q |
349 |
ttgtctcagttta |
361 |
Q |
| |
|
||||||||||||| |
|
|
| T |
24865004 |
ttgtctcagttta |
24865016 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 160; E-Value: 5e-85
Query Start/End: Original strand, 335 - 498
Target Start/End: Original strand, 24865016 - 24865179
Alignment:
| Q |
335 |
attgtgaattctaattgtctcagtttagtgagagcgtattaaacaaagcggataagaaggagaaagtgagaaatatggatttgcatgagtgtttagccaa |
434 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
24865016 |
attgtgaattctaattgtctcagtttagtgagagcgtattaaacaaagcggataagaaggagaaagtgagaaatatggatttgcacgagtgtttagccaa |
24865115 |
T |
|
| Q |
435 |
aatcaaacttcgatattaaagttgcatcctttaaaaacttcatggttatgaaaatatttgaaaa |
498 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24865116 |
aatcaaacttcgatattaaagttgcatcctttaaaaacttcatggttatgaaaatatttgaaaa |
24865179 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1434 times since January 2019
Visitors: 2192