View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0197_1D_low_9 (Length: 298)
Name: NF0197_1D_low_9
Description: NF0197_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0197_1D_low_9 |
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Alignment Details
Target: chr5 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 56 - 292
Target Start/End: Original strand, 35258677 - 35258913
Alignment:
| Q |
56 |
agaacctgtgcatagttagacagaagaagtgaattgtaaggtgcaagatttatatgctttttgtaataagcatcagttttctcatattcctcatattgat |
155 |
Q |
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| T |
35258677 |
agaaactgtgcatagttagacagaagaagtgaattgtaaggtgcaagatttatatgctttttgtaataagcatcagttttctcatattcctcatattgat |
35258776 |
T |
|
| Q |
156 |
ccccttcaatctccacagaaacaggactcagaaacttcatcattgtttcatgatccaaatcctcacccctcaattctctttgcatctttgaagcttcctc |
255 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
35258777 |
ccccttcaatctccacagaaacaggactcagaaacttcatcattgtttcatgatccaaatcctcacccctcaattctctttgtatctttgaagcttcctc |
35258876 |
T |
|
| Q |
256 |
caacataaaattccacaacttttcttcctcttctgtc |
292 |
Q |
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||||||||||||||||||||||||||||||||||||| |
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| T |
35258877 |
caacataaaattccacaacttttcttcctcttctgtc |
35258913 |
T |
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