View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0197_2D_high_3 (Length: 446)
Name: NF0197_2D_high_3
Description: NF0197_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0197_2D_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 2e-99; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 2e-99
Query Start/End: Original strand, 230 - 432
Target Start/End: Original strand, 1500590 - 1500795
Alignment:
| Q |
230 |
gagggaatgagcgttgagtgaaatatttgtaacccacaaaatccaaacatttaaccatttttcatctcatttccaaagctcaacctcaactcccaatttt |
329 |
Q |
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| T |
1500590 |
gagggaatgagcgttgagtgaaatatttgtaacccacaaaatccaaacatttaaccatttttcatctcatttccaaagctcaacctcaacttccaatttt |
1500689 |
T |
|
| Q |
330 |
cctaaaatcggtctctataattggccttacggtgaaaatcgtcttctagttcgccaatttctccatctatttc---tattagtttattcaatcatcactt |
426 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |
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| T |
1500690 |
cctaaaatcggtctctataattggccttacgatgaaaatcgtcttctagttcgccaatttctccatctatttctattattagtttattcaatcatcactt |
1500789 |
T |
|
| Q |
427 |
catctc |
432 |
Q |
| |
|
|||||| |
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| T |
1500790 |
catctc |
1500795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 83 - 149
Target Start/End: Original strand, 1500427 - 1500493
Alignment:
| Q |
83 |
ataaaatcgtaggtatagaaaatatatacctacggaaacatcattgtatgaaggcatagacatctat |
149 |
Q |
| |
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|
| T |
1500427 |
ataaaatcgtaggtatagaaaatatatacctacggaaacatcattgtatgaaggcatagacatctat |
1500493 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 230 - 328
Target Start/End: Original strand, 1503969 - 1504066
Alignment:
| Q |
230 |
gagggaatgagcgttgagtgaaatatttgtaacccacaaaatccaaacatttaaccatttttcatctcatttccaaagctcaacctcaactcccaattt |
328 |
Q |
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| T |
1503969 |
gagggaatgagtggtgagtgaaatatttgtaacttgcaaaacccaaaaaattcaacgtttt-cagctcatttccaaaactcaacctcaactctcaattt |
1504066 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 6926297 - 6926225
Alignment:
| Q |
1 |
ttggaaagaattaattctttccaaattaattgannnnnnncatatgaatcactaacatattcaactaaatctttatttt |
79 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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| T |
6926297 |
ttggaaagaattaattctttccaaattaattgatttttttcatatgaat------catattcaactaaatctttatttt |
6926225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 79
Target Start/End: Complemental strand, 501554 - 501482
Alignment:
| Q |
1 |
ttggaaagaattaattctttccaaattaattgannnnnnncatatgaatcactaacatattcaactaaatctttatttt |
79 |
Q |
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|
||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||| |
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|
| T |
501554 |
ttggaaagaattaattctttccaaattaattgatttttttcatatgaat------catattcaactaaatctttatttt |
501482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 125
Target Start/End: Original strand, 11353713 - 11353753
Alignment:
| Q |
85 |
aaaatcgtaggtatagaaaatatatacctacggaaacatca |
125 |
Q |
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|||||||| |||||||||||||||||||||| |||| |||| |
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| T |
11353713 |
aaaatcgttggtatagaaaatatatacctacagaaaaatca |
11353753 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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