View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0197_2D_low_11 (Length: 385)
Name: NF0197_2D_low_11
Description: NF0197_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0197_2D_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 363; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 363; E-Value: 0
Query Start/End: Original strand, 1 - 367
Target Start/End: Complemental strand, 41826659 - 41826293
Alignment:
| Q |
1 |
ttggtgtagctttacttgcttggaatcaatctgaggaatttgtatatgcctactatgtgcttcgcacaatttcgtatataatcagtaaaggaagtatttt |
100 |
Q |
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| T |
41826659 |
ttggtgtagctttacttgcttggaatcaatctgaggaatttgtatatgcatactatgtgcttcgcacaatttcgtatataatcagtaaaggaagtatttt |
41826560 |
T |
|
| Q |
101 |
ctgcatctctgtcgcgtatgtggtgagatttttatcttaatttaactaaattttgaaaagaaaaagaagatggtaaacaattttatttacatattgatat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41826559 |
ctgcatctctgtcgcgtatgtggtgagatttttatcttaatttaactaaattttgaaaagaaaaagaagatggtaaacaattttatttacatattgatat |
41826460 |
T |
|
| Q |
201 |
ctttcctctgtcaggcagatgttgtcaatgaaaacaaaagggcagcagtatttggttggatcactggtctcttttcggcttcacatgttgttgggaacgt |
300 |
Q |
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| T |
41826459 |
ctttcctctgtcaggcagatgttgtcaatgaaaacaaaagggcagcagtatttggttggatcactggtctcttttcggcttcacatgttgttgggaacgt |
41826360 |
T |
|
| Q |
301 |
cttggctcgatttcttcctcaaaactacatttttgtggtaatctttgttcattaagttttgtgttga |
367 |
Q |
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| T |
41826359 |
cttggctcgatttcttcctcaaaactacatttttgtggtaatctttgttcattaagttttgtgttga |
41826293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 5 - 370
Target Start/End: Complemental strand, 41820008 - 41819648
Alignment:
| Q |
5 |
tgtagctttacttgcttggaatcaatctgaggaatttgtatatgcctactatgtgcttcgcacaatttcgtatataatcagtaaaggaagtattttctgc |
104 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| |||||| |||||||||| |||||| |
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| T |
41820008 |
tgtagctttacttgcttggaatcaatctaaggaatttgtatatgcctactatgtgcttcgcacattttcgcatattatcagtcaaggaagtatcttctgc |
41819909 |
T |
|
| Q |
105 |
atctctgtcgcgtatgtggtgagatttttatcttaatttaactaaattttgaaaagaaaaagaagatggtaaacaattttatttacatattgatatcttt |
204 |
Q |
| |
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|| |||||||||||||||||||| ||||| |||||| ||||||||||| ||||| ||||| || || || || |||||||||||||| ||| ||| |
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| T |
41819908 |
atttctgtcgcgtatgtggtgaggttttt-tcttaa-ccaactaaattttcaaaag---aagaaaattgttaaaaaatttatttacatattcata-cttc |
41819815 |
T |
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| Q |
205 |
c-ctctgtcaggcagatgttgtcaatgaaaacaaaagggcagcagtatttggttggatcactggtctcttttcggcttcacatgttgttgggaacgtctt |
303 |
Q |
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| |||| | ||||||||||||| |||||| |||||| | |||||||||| |||||||||||||||||| ||| ||| |||||||| ||| ||| ||||| |
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| T |
41819814 |
ctctcttttaggcagatgttgttcatgaaagcaaaagagtagcagtatttagttggatcactggtctctcttctgctgcacatgttattgcgaatgtctt |
41819715 |
T |
|
| Q |
304 |
ggctcgatttcttcctcaaaactacatttttgtggtaatctttgttcattaagttttgtgttgatgt |
370 |
Q |
| |
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||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |
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| T |
41819714 |
tgctcggtttcttcctcaaaactacatttttgtggtaatctttgttcattgagttttgtgttcatgt |
41819648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 1148500 - 1148466
Alignment:
| Q |
1 |
ttggtgtagctttacttgcttggaatcaatctgag |
35 |
Q |
| |
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||||||||||||||||||||||||||||||||||| |
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| T |
1148500 |
ttggtgtagctttacttgcttggaatcaatctgag |
1148466 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 2830514 - 2830543
Alignment:
| Q |
1 |
ttggtgtagctttacttgcttggaatcaat |
30 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
2830514 |
ttggtgtagctttacttgcttggaatcaat |
2830543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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