View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0197_2D_low_13 (Length: 349)
Name: NF0197_2D_low_13
Description: NF0197_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0197_2D_low_13 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 248; Significance: 1e-137; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 69 - 340
Target Start/End: Complemental strand, 44821280 - 44821009
Alignment:
| Q |
69 |
gcctaaaatgtaacatatgctttcatacctttcactttctcattaataatgttatcacaaaacaaaactctgtatgattgtaggaatgcttggtttgctt |
168 |
Q |
| |
|
|||||| |||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
44821280 |
gcctaacatgtaacatatgctttcatagctttcacttgctcattaataatgttatcacaaaacaaaactctgtatgattgtaggaatgcttggtctgctt |
44821181 |
T |
|
| Q |
169 |
ctacgcacggaattgaactcaactcaacgtgactatgctcagactgctcaagcatgtgggaaggctctgatagcattaataaatgaagtgcttgaccgag |
268 |
Q |
| |
|
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44821180 |
ctacgcacggaattgaactcaactcaacgggactatgctcagactgctcaagcatgtgggaaggctctgatagcattaataaatgaagtgcttgaccgag |
44821081 |
T |
|
| Q |
269 |
cgaaaattgaagctggcaaattagagctggaagcggttccatttgaccttcgttccatactcgatgatgtcc |
340 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44821080 |
caaaaattgaagctggcaaattagagctggaagcggttccatttgaccttcgttccatactcgatgatgtcc |
44821009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 1 - 46
Target Start/End: Complemental strand, 44821342 - 44821297
Alignment:
| Q |
1 |
ctcatgaaattagaatacctatgaatggcattttaggtaactccaa |
46 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| ||| |
|
|
| T |
44821342 |
ctcatgaaattagaacacctatgaatggcattttaggtaactgcaa |
44821297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 69 - 340
Target Start/End: Original strand, 28130335 - 28130596
Alignment:
| Q |
69 |
gcctaaaatgtaacatatgctttcatacctttcactttctcattaataatgttatcacaaaacaaaactctgtatgattgtaggaatgcttggtttgctt |
168 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
28130335 |
gcctaaaatgtaacatatgctttcatacctttcactttctcattaataatgttatcacaaaacaaaactctgtatgattgtaggaatgcttggtctgctt |
28130434 |
T |
|
| Q |
169 |
ctacgcacggaattgaactcaactcaacgtgactatgctcagactgctcaagcatgtgggaaggctctgatagcattaataaatgaagtgcttgaccgag |
268 |
Q |
| |
|
||| |||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||| |||||||||||||||| |
|
|
| T |
28130435 |
cta--cacggaattgaactcaacccaacgtgactatgctcagaccgctcaagcatgtgggaaggctctgat--------taaacgaagtgcttgaccgag |
28130524 |
T |
|
| Q |
269 |
cgaaaattgaagctggcaaattagagctggaagcggttccatttgaccttcgttccatactcgatgatgtcc |
340 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
28130525 |
caaaaattgaagctggcaaattagagctggaagcggttccatttgaccttcgttccatactcgatgatgtcc |
28130596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 1 - 49
Target Start/End: Original strand, 28130265 - 28130313
Alignment:
| Q |
1 |
ctcatgaaattagaatacctatgaatggcattttaggtaactccaagat |
49 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
28130265 |
ctcatgaaattagaacacctatgaatggcattttaggtaactccaagat |
28130313 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 202 - 251
Target Start/End: Original strand, 19828982 - 19829031
Alignment:
| Q |
202 |
tatgctcagactgctcaagcatgtgggaaggctctgatagcattaataaa |
251 |
Q |
| |
|
|||||||| || ||||||||||||||| ||| |||||||||| ||||||| |
|
|
| T |
19828982 |
tatgctcaaacagctcaagcatgtggggaggttctgatagcagtaataaa |
19829031 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2672 times since January 2019
Visitors: 2402