View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0197_2D_low_16 (Length: 343)
Name: NF0197_2D_low_16
Description: NF0197_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0197_2D_low_16 |
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Alignment Details
Target: chr1 (Bit Score: 255; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 327
Target Start/End: Original strand, 34309900 - 34310225
Alignment:
| Q |
1 |
atttatacaagtgtagatataataacaatgcatattcatcaagtaaagtttggaagctgtaagcaaagcataactaaattatttcaagcgtaacttttat |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| || |
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| T |
34309900 |
atttatacaagtgtagatataataa---tgcatattcatcaagtaaagtttggaagctgtaaacaaagcataactaaattatttcaagcgtaactttgat |
34309996 |
T |
|
| Q |
101 |
tatgataaacttattaggtttact-cagctttgt-cttaagtaatttcctcgcctgttttaaattttcacctcctataaatacagatccttaatgttagt |
198 |
Q |
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|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
34309997 |
tatgataaacttattaggtttactgcagctttgtccttaagtaatttcctcgcctgttttaaattttcacctcctataaatactgatccttaatgttagt |
34310096 |
T |
|
| Q |
199 |
aatgttcnnnnnnnnacattttacgactcattttaaaactaataatgttgcgagatttggcgtggaaaatctcttttttcataccttgtctgatttgaag |
298 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||| |
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| T |
34310097 |
aatgttcttttttttacattttacgactcattttaaaactaataatgttgcgagatttggcgtggagaatctctttttccataccttgtctgatttgaag |
34310196 |
T |
|
| Q |
299 |
gaagatataaaatgaggtttgtaactgat |
327 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
34310197 |
gaagatataaaatgaggtttgtaactgat |
34310225 |
T |
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