View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0197_2D_low_18 (Length: 342)
Name: NF0197_2D_low_18
Description: NF0197_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0197_2D_low_18 |
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Alignment Details
Target: chr1 (Bit Score: 159; Significance: 1e-84; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 159; E-Value: 1e-84
Query Start/End: Original strand, 125 - 326
Target Start/End: Original strand, 34310023 - 34310225
Alignment:
| Q |
125 |
agctttgtc-ttaagtaatttcctcgcctgttttaaattttcacctcctataaatacagatccttaatgttagtaatgttcnnnnnnnnacattttacga |
223 |
Q |
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| T |
34310023 |
agctttgtccttaagtaatttcctcgcctgttttaaattttcacctcctataaatactgatccttaatgttagtaatgttcttttttttacattttacga |
34310122 |
T |
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| Q |
224 |
ctcattttaaaactaataatgttgcgagatttggcgtggaaaatctcttttttcataccttgtctgatttgaaggaagatataaaatgaggtttgtaact |
323 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34310123 |
ctcattttaaaactaataatgttgcgagatttggcgtggagaatctctttttccataccttgtctgatttgaaggaagatataaaatgaggtttgtaact |
34310222 |
T |
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| Q |
324 |
gat |
326 |
Q |
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||| |
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| T |
34310223 |
gat |
34310225 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 99; E-Value: 8e-49
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 34309924 - 34309791
Alignment:
| Q |
1 |
ttattatatctacacttgtataaataatacttcatatgtgataatatgaatcactttcaacnnnnnnnncacagttcttgtattctttgtctttgcaatt |
100 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
34309924 |
ttattatatctacacttgtataaata-tacttcatatgtgataatatgaatcactttcaacttttttttcacagttcttgtattctttgtctttgcaatt |
34309826 |
T |
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| Q |
101 |
tttacctgtttcctgaagttgctaagctttgtctt |
135 |
Q |
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||||| ||||||||||||||||||||||||||||| |
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| T |
34309825 |
tttacatgtttcctgaagttgctaagctttgtctt |
34309791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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