View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0197_2D_low_2 (Length: 902)
Name: NF0197_2D_low_2
Description: NF0197_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0197_2D_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 755; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 755; E-Value: 0
Query Start/End: Original strand, 1 - 860
Target Start/End: Original strand, 48393198 - 48394055
Alignment:
| Q |
1 |
gtgtgtgacactgacacatgtgattcaattcaattgtgtcattttcacaaattattgaaattcaagtgcttagggtttcaattgagatatatttgcttgc |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48393198 |
gtgtgtgacactgacacatgtgattcaattcaattgtgtcattttcacaaattattgaaattcaagtgcttagggtttcaattgagatatatttgcttgt |
48393297 |
T |
|
| Q |
101 |
tgtcttgaaacaagttgattcttatttaattttgagcatttggtatatttgaggttacatcaagttgactannnnnnnnatcattttcgtaggctcagta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| |
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| T |
48393298 |
tgtcttgaaacaagttgattcttatttaattttgagcatttggtatatttgaggttacatcaagttgattattttttt-atcattttcgtaggctcagta |
48393396 |
T |
|
| Q |
201 |
catttcaaagcttgttaaaatcgctgggataacaattgctgcgtcgaggactaaggcaaaagcaacatatgtgaccttgatatgtaagaattgtaagaag |
300 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48393397 |
catttcgaagcttgttaaaatcgctgggataacaattgctgcgtcgaggactaaggcaaaagcaacatatgtgaccttgatatgtaagaattgtaagaag |
48393496 |
T |
|
| Q |
301 |
gggaagcaagttccgtgtcggccaggacttggtggagcagttgttccacgttcatgtgatcatgttcctcaggtttagtttgtactgtcttttgcttatt |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48393497 |
gggaagcaagttccgtgtcggccaggacttggtggagcagttgttccacgttcatgtgatcatgttcctcaggtttagtttgtactgtcttttgcttatt |
48393596 |
T |
|
| Q |
401 |
ttgcagtggaaacttcaccgttctttattttgcgttttttgaggatgtctcttacatgataaaagtgannnnnnnnnngtagcctggagaagaaccttgt |
500 |
Q |
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| T |
48393597 |
ttgcagtggaaacttcaccgttctttattttgcattttttgaggatgtctcttacatgataaaagtgattttttttttgtagcctggagaagaaccttgt |
48393696 |
T |
|
| Q |
501 |
ccaattgatccgtggcttattgttcccgacaagagcaagtatgttgatcaacaaaccttgaagttgcaagaaaatccggaggtagtaatatacatttgat |
600 |
Q |
| |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
48393697 |
ccaattgatccgtggcttattgttcctgacaagagcaagtatgttgatcaacaaaccttgaagttgcaagaaaatccggaggtagtaatatacatttgat |
48393796 |
T |
|
| Q |
601 |
atgataaaaggtttaaagacaatttgaattataatcatatgacatctttatgttggcttttgaaggatgttccaactggagagcttcctagaaacttgct |
700 |
Q |
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| T |
48393797 |
atgataaaaggtttaaagacaatttgaattataatcatatgacatctttatgttggcttttgaaggatgttccaactggagagcttcctagaaacttgct |
48393896 |
T |
|
| Q |
701 |
tctatccgttgatcgacatcttgttcaaactgtagtgcctggctcaagattaacaatcgttggaatctatagtatttttcaggcctccaactcttctgca |
800 |
Q |
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| T |
48393897 |
tctatccgttgatcgacatcttgttcaaactgtagtgcctggctcaagattaacaatcgttggaatctatagtatttttcaggcctccaactcttctgca |
48393996 |
T |
|
| Q |
801 |
tcgtgagattaatcatcnnnnnnncagcatctttagatttcttctttgaccaatctacag |
860 |
Q |
| |
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| T |
48393997 |
tcgtgagattaatcatc-ttttttcagcatctttagatttcttctttgaccaatctacag |
48394055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 249 - 383
Target Start/End: Original strand, 31937420 - 31937550
Alignment:
| Q |
249 |
gactaaggcaaaagcaacatatgtgaccttgatatgtaagaattgtaagaaggggaagcaagttccgtgtcggccaggacttggtggagcagttgttcca |
348 |
Q |
| |
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||||||| |||| ||||||||||||||| |||| || ||||||| |||||||| ||||||| || |||||| | |||||||| |||| |||||||| |
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| T |
31937420 |
gactaagacaaaggcaacatatgtgaccctgatttgcaagaattttaagaaggagaagcaaattatgtgtcgacagggacttgggcgagcggttgttcct |
31937519 |
T |
|
| Q |
349 |
cgttcatgtgatcatgttcctcaggtttagtttgt |
383 |
Q |
| |
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||||| || |||||| |||| ||||||||||| |
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| T |
31937520 |
cgttcgtg----catgtttctcaagtttagtttgt |
31937550 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 33; Significance: 0.000000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 8 - 56
Target Start/End: Original strand, 6284663 - 6284711
Alignment:
| Q |
8 |
acactgacacatgtgattcaattcaattgtgtcattttcacaaattatt |
56 |
Q |
| |
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||||| |||||||||||| ||||||||| |||||||||| ||||||||| |
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| T |
6284663 |
acactaacacatgtgattaaattcaattatgtcattttctcaaattatt |
6284711 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 7 - 54
Target Start/End: Original strand, 19323449 - 19323496
Alignment:
| Q |
7 |
gacactgacacatgtgattcaattcaattgtgtcattttcacaaatta |
54 |
Q |
| |
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|||||| |||||||||||| ||||||||| |||||||||| ||||||| |
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| T |
19323449 |
gacacttacacatgtgattaaattcaattatgtcattttctcaaatta |
19323496 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 7 - 56
Target Start/End: Original strand, 9210826 - 9210875
Alignment:
| Q |
7 |
gacactgacacatgtgattcaattcaattgtgtcattttcacaaattatt |
56 |
Q |
| |
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|||| ||||||||||||||| ||| |||| |||||||||| ||||||||| |
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| T |
9210826 |
gacattgacacatgtgattccattgaattatgtcattttctcaaattatt |
9210875 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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