View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0197_2D_low_22 (Length: 322)
Name: NF0197_2D_low_22
Description: NF0197_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0197_2D_low_22 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 6704031 - 6703816
Alignment:
| Q |
19 |
acatacaaattaatcatcatatttatgtgcacgaggccatgcattgagtgatattattatccattagtgtatatgtgccattatggtgtgtccaccatga |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6704031 |
acatacaaattaatcatcatatttatgtgcacgaggccatgcattgagtgatattattatccattagtgtatatgtgccattatggtgtgtccaccatga |
6703932 |
T |
|
| Q |
119 |
atgaaactttg-aatacttcatgcacacacttcattatcgaattacatcactactacttgttgcctcattattacttaataaaggtttgaatccttacaa |
217 |
Q |
| |
|
||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
6703931 |
atgcaactttgaaatacttcatgcacacacttcattatcgaattacaccactactacttgttgcctcataattacttaataaaggtttgaatccttacaa |
6703832 |
T |
|
| Q |
218 |
gaaacggggtagcata |
233 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
6703831 |
gaaacggggtagcata |
6703816 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 321
Target Start/End: Original strand, 6703680 - 6703777
Alignment:
| Q |
225 |
ggtagcataagctaaatgaaaatgaaaagttagcatctaatcattgttnnnnnnn-cttagaaattttatcctaggtcagatctagctatagatatct |
321 |
Q |
| |
|
|||||||| | |||||| ||||||| |||||| ||||||||||||||| | |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
6703680 |
ggtagcatcatctaaataaaaatgataagttatcatctaatcattgttaaaaaaaacgtagatattttatcctaggtcagatctagctatagatatct |
6703777 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University