View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0197_2D_low_22 (Length: 322)
Name: NF0197_2D_low_22
Description: NF0197_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0197_2D_low_22
Alignment Details
Target: chr7 (Bit Score: 196; Significance: 1e-106; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 19 - 233
Target Start/End: Complemental strand, 6704031 - 6703816
Alignment:
Q
19
acatacaaattaatcatcatatttatgtgcacgaggccatgcattgagtgatattattatccattagtgtatatgtgccattatggtgtgtccaccatga
118
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
6704031
acatacaaattaatcatcatatttatgtgcacgaggccatgcattgagtgatattattatccattagtgtatatgtgccattatggtgtgtccaccatga
6703932
T
Q
119
atgaaactttg-aatacttcatgcacacacttcattatcgaattacatcactactacttgttgcctcattattacttaataaaggtttgaatccttacaa
217
Q
||| ||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||
T
6703931
atgcaactttgaaatacttcatgcacacacttcattatcgaattacaccactactacttgttgcctcataattacttaataaaggtttgaatccttacaa
6703832
T
Q
218
gaaacggggtagcata
233
Q
||||||||||||||||
T
6703831
gaaacggggtagcata
6703816
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 225 - 321
Target Start/End: Original strand, 6703680 - 6703777
Alignment:
Q
225
ggtagcataagctaaatgaaaatgaaaagttagcatctaatcattgttnnnnnnn-cttagaaattttatcctaggtcagatctagctatagatatct
321
Q
|||||||| | |||||| ||||||| |||||| ||||||||||||||| | |||| |||||||||||||||||||||||||||||||||||
T
6703680
ggtagcatcatctaaataaaaatgataagttatcatctaatcattgttaaaaaaaacgtagatattttatcctaggtcagatctagctatagatatct
6703777
T
Back To:
[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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