View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0197_2D_low_24 (Length: 304)
Name: NF0197_2D_low_24
Description: NF0197_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0197_2D_low_24 |
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Alignment Details
Target: chr4 (Bit Score: 161; Significance: 7e-86; HSPs: 12)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 161; E-Value: 7e-86
Query Start/End: Original strand, 21 - 193
Target Start/End: Complemental strand, 2546926 - 2546754
Alignment:
| Q |
21 |
acttctttgaagaatttcccgactctcaattgttctgagattacttgtgtacacaagaatgatttattcttcattgttgattgttttcctttactcgaag |
120 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
2546926 |
acttatttgaagaatttcccgactctcaattgttctgagattacttgtgtacacaagaatgatttattcttcattgctgattgttttcctttactcgaag |
2546827 |
T |
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| Q |
121 |
aattcaccctgatggaagaattcaacccccattgttatttcactatttctagtagcattaatttcgtgctagc |
193 |
Q |
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| T |
2546826 |
aattcaccctgatggaagaattcaacccccattgttatttcactatttctagtagcattaatttcatgctagc |
2546754 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 222 - 287
Target Start/End: Complemental strand, 2546725 - 2546660
Alignment:
| Q |
222 |
cgattcttggtacttcccaaaatcccgtggcatttgtttgtatggaaacttcgttgatagaagagg |
287 |
Q |
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| T |
2546725 |
cgattcttggtacttcccaaaatcccgtagcatttgtttatatggaaacttcgttgataaaagagg |
2546660 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 74 - 141
Target Start/End: Complemental strand, 2547273 - 2547206
Alignment:
| Q |
74 |
caagaatgatttattcttcattgttgattgttttcctttactcgaagaattcaccctgatggaagaat |
141 |
Q |
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| T |
2547273 |
caagaatgatttattcttcattgctgattgtttccctttacttgaagaactcaccctaatggaagaat |
2547206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 122
Target Start/End: Original strand, 2621482 - 2621530
Alignment:
| Q |
74 |
caagaatgatttattcttcattgttgattgttttcctttactcgaagaa |
122 |
Q |
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| T |
2621482 |
caagaatgatctattcttccttgctgattgtttccctttactcgaagaa |
2621530 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 67 - 122
Target Start/End: Original strand, 5106626 - 5106681
Alignment:
| Q |
67 |
gtgtacacaagaatgatttattcttcattgttgattgttttcctttactcgaagaa |
122 |
Q |
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| T |
5106626 |
gtgtagacaagagtgatctcttcttcattgctgattgtttccctttactcgaagaa |
5106681 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 122
Target Start/End: Original strand, 2367980 - 2368030
Alignment:
| Q |
72 |
cacaagaatgatttattcttcattgttgattgttttcctttactcgaagaa |
122 |
Q |
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| T |
2367980 |
cacaagagtgatctcttcttcattgctgattgtttccctttactcgaagaa |
2368030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 122
Target Start/End: Complemental strand, 2518964 - 2518914
Alignment:
| Q |
72 |
cacaagaatgatttattcttcattgttgattgttttcctttactcgaagaa |
122 |
Q |
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| T |
2518964 |
cacaagaatgatctcttcttcattgctgattgtttccctttactcaaagaa |
2518914 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 122
Target Start/End: Original strand, 2391337 - 2391386
Alignment:
| Q |
73 |
acaagaatgatttattcttcattgttgattgttttcctttactcgaagaa |
122 |
Q |
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| T |
2391337 |
acaagaaggatatcttcttcattgttgattgcttccctttactcgaagaa |
2391386 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 130
Target Start/End: Complemental strand, 2471786 - 2471729
Alignment:
| Q |
73 |
acaagaatgatttattcttcattgttgattgttttcctttactcgaagaattcaccct |
130 |
Q |
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|||||||| || | ||||| || | ||||||||||||||||||||||||| ||||||| |
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| T |
2471786 |
acaagaatcatctcttcttgatagctgattgttttcctttactcgaagaactcaccct |
2471729 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 73 - 122
Target Start/End: Complemental strand, 5035352 - 5035303
Alignment:
| Q |
73 |
acaagaatgatttattcttcattgttgattgttttcctttactcgaagaa |
122 |
Q |
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||||||||||| | ||||| |||| ||||||||| ||||||||||||||| |
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| T |
5035352 |
acaagaatgatcttttcttgattgctgattgtttccctttactcgaagaa |
5035303 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 50 - 122
Target Start/End: Original strand, 2381686 - 2381758
Alignment:
| Q |
50 |
ttgttctgagattacttgtgtacacaagaatgatttattcttcattgttgattgttttcctttactcgaagaa |
122 |
Q |
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||||||||| |||||||| | ||||||| ||||| || |||||||| ||||| || ||||||||||||||| |
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| T |
2381686 |
ttgttctgaaattacttggatcaacaagaaggatttcttattcattgtcgattgcttccctttactcgaagaa |
2381758 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 73 - 121
Target Start/End: Complemental strand, 2467272 - 2467224
Alignment:
| Q |
73 |
acaagaatgatttattcttcattgttgattgttttcctttactcgaaga |
121 |
Q |
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||||||| ||| | |||||||||| ||||||||| |||||||||||||| |
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| T |
2467272 |
acaagaacgatcttttcttcattgctgattgtttccctttactcgaaga |
2467224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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