View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0197_2D_low_26 (Length: 300)

Name: NF0197_2D_low_26
Description: NF0197_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0197_2D_low_26
NF0197_2D_low_26
[»] chr2 (4 HSPs)
chr2 (29-292)||(3400325-3400589)
chr2 (212-263)||(11000563-11000614)
chr2 (212-263)||(14439232-14439283)
chr2 (4-33)||(3400263-3400292)
[»] scaffold0178 (1 HSPs)
scaffold0178 (212-263)||(16917-16968)
[»] chr7 (5 HSPs)
chr7 (212-263)||(18529986-18530037)
chr7 (212-263)||(25618935-25618986)
chr7 (212-258)||(37254234-37254280)
chr7 (215-263)||(23911298-23911346)
chr7 (261-297)||(25619033-25619069)
[»] chr8 (4 HSPs)
chr8 (212-258)||(2169816-2169862)
chr8 (212-263)||(43269926-43269977)
chr8 (212-263)||(17698958-17699009)
chr8 (218-263)||(20823778-20823823)
[»] chr6 (12 HSPs)
chr6 (212-263)||(214879-214930)
chr6 (212-263)||(10929917-10929968)
chr6 (212-263)||(11461890-11461941)
chr6 (212-263)||(17606945-17606996)
chr6 (212-255)||(10577853-10577896)
chr6 (216-263)||(20883643-20883690)
chr6 (212-263)||(21630722-21630773)
chr6 (212-263)||(34714148-34714199)
chr6 (215-263)||(17579693-17579741)
chr6 (261-300)||(11461989-11462028)
chr6 (261-300)||(20883557-20883596)
chr6 (215-263)||(14514169-14514217)
[»] chr4 (10 HSPs)
chr4 (212-263)||(4548832-4548883)
chr4 (212-263)||(5147315-5147366)
chr4 (212-263)||(41973616-41973667)
chr4 (215-263)||(5142898-5142946)
chr4 (212-263)||(8360604-8360655)
chr4 (212-263)||(24506243-24506294)
chr4 (215-263)||(19468505-19468553)
chr4 (212-263)||(12697289-12697340)
chr4 (212-263)||(20002194-20002245)
chr4 (261-300)||(5142993-5143032)
[»] chr3 (9 HSPs)
chr3 (212-263)||(12342840-12342891)
chr3 (212-255)||(19890155-19890198)
chr3 (212-263)||(29524358-29524409)
chr3 (212-263)||(11203295-11203346)
chr3 (212-263)||(30695956-30696007)
chr3 (212-263)||(33496024-33496075)
chr3 (212-263)||(7031628-7031679)
chr3 (220-263)||(36801688-36801731)
chr3 (228-263)||(35214984-35215019)
[»] chr1 (7 HSPs)
chr1 (212-263)||(37298111-37298162)
chr1 (212-258)||(37192545-37192591)
chr1 (212-263)||(26206920-26206971)
chr1 (212-263)||(43387843-43387894)
chr1 (212-263)||(49094375-49094426)
chr1 (215-263)||(16918422-16918470)
chr1 (212-263)||(17400587-17400638)
[»] chr5 (6 HSPs)
chr5 (212-258)||(33385992-33386038)
chr5 (215-263)||(10773930-10773978)
chr5 (212-263)||(18359703-18359754)
chr5 (215-263)||(8300795-8300843)
chr5 (212-256)||(27766519-27766563)
chr5 (215-263)||(25858037-25858085)
[»] scaffold0472 (1 HSPs)
scaffold0472 (212-263)||(7423-7474)


Alignment Details
Target: chr2 (Bit Score: 134; Significance: 9e-70; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 134; E-Value: 9e-70
Query Start/End: Original strand, 29 - 292
Target Start/End: Original strand, 3400325 - 3400589
Alignment:
Q  29 ttttattataattttaagggatttcatttcacacgttaatagttttcttttatctattttagcacttata-cgtcatcacgtttacaaatttaataaata 127  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||    
T  3400325 ttttattataattttaagggatttcatttcacgcgttaatagttttcttttatctattttatcacttatatcgtcatcacgtttacaaatttaataaata 3400424  T
Q  128 catttgnnnnnnnnnnntgtgttagagagtgtattgttggtataattcttggtacattttcactccttaataat---annnnnnnnnaagaaacaaaaat 224  Q
    ||||||           ||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||             ||||||| |||||    
T  3400425 catttg-aaaaaaaaaatgtgttagagagtgtattgttggtataattcttcgtacattttcaccccttaataatttatttatttttgaagaaactaaaat 3400523  T
Q  225 ggaatatattactatgaacaccgtaattgttgaaacacatcaaagtcaatcgatacctatacataaaa 292  Q
    ||||||||||||||||||||||||||||||||||   ||||| ||||||||||||||||| |||||||    
T  3400524 ggaatatattactatgaacaccgtaattgttgaa--gcatcatagtcaatcgatacctatgcataaaa 3400589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 11000614 - 11000563
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  11000614 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaagcaca 11000563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 14439232 - 14439283
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  14439232 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaagcaca 14439283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 4 - 33
Target Start/End: Original strand, 3400263 - 3400292
Alignment:
Q  4 atattattcttatattgtgatttgatttta 33  Q
    ||||||||||||||||||||||||||||||    
T  3400263 atattattcttatattgtgatttgatttta 3400292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0178 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: scaffold0178
Description:

Target: scaffold0178; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 16968 - 16917
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  16968 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaagcaca 16917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 48; Significance: 2e-18; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 18529986 - 18530037
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  18529986 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaagcaca 18530037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 25618935 - 25618986
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||| ||||    
T  25618935 aagaaacaaaaatggaatatattactataaacaacgtaattgttgaagcaca 25618986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 212 - 258
Target Start/End: Original strand, 37254234 - 37254280
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaa 258  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||    
T  37254234 aagaaacaaaaatggaatatattactatgaaaaccgtaattattgaa 37254280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 23911298 - 23911346
Alignment:
Q  215 aaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    ||||||||||| ||||||||||||  |||||  ||||||||||||||||    
T  23911298 aaacaaaaatgaaatatattactaaaaacactataattgttgaaacaca 23911346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 297
Target Start/End: Original strand, 25619033 - 25619069
Alignment:
Q  261 acatcaaagtcaatcgatacctatacataaaaacggg 297  Q
    ||||||||||||||||||||| |||||||||| ||||    
T  25619033 acatcaaagtcaatcgatacccatacataaaagcggg 25619069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 47; Significance: 7e-18; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 212 - 258
Target Start/End: Original strand, 2169816 - 2169862
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaa 258  Q
    |||||||||||||||||||||||||||||||||||||||||||||||    
T  2169816 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaa 2169862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 43269926 - 43269977
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  43269926 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagcaca 43269977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 17698958 - 17699009
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    ||||||||||||||||||||||||||||||| || |||||||||||| ||||    
T  17698958 aagaaacaaaaatggaatatattactatgaatactgtaattgttgaagcaca 17699009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 218 - 263
Target Start/End: Original strand, 20823778 - 20823823
Alignment:
Q  218 caaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    |||||||||||||||||||||  ||||| |||||||||||| ||||    
T  20823778 caaaaatggaatatattactaaaaacactgtaattgttgaagcaca 20823823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 12)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 214879 - 214930
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  214879 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagcaca 214930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 10929968 - 10929917
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  10929968 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagcaca 10929917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 11461890 - 11461941
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    ||||||||||||||||||||||| |||||||||||||||||| |||| ||||    
T  11461890 aagaaacaaaaatggaatatattgctatgaacaccgtaattgatgaagcaca 11461941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 17606996 - 17606945
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||| ||||    
T  17606996 aagaaacaaaaatggaatatattactataaacactgtaattgttgaagcaca 17606945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 255
Target Start/End: Complemental strand, 10577896 - 10577853
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgtt 255  Q
    |||||||||||||||||||||||||||||||||| | |||||||    
T  10577896 aagaaacaaaaatggaatatattactatgaacactgcaattgtt 10577853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 216 - 263
Target Start/End: Complemental strand, 20883690 - 20883643
Alignment:
Q  216 aacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    ||||||||||||||||||||||||||||||  ||||||||||| ||||    
T  20883690 aacaaaaatggaatatattactatgaacactttaattgttgaagcaca 20883643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 21630773 - 21630722
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    |||| ||||||||||||||||||||||||||||  |||||||||||| ||||    
T  21630773 aagacacaaaaatggaatatattactatgaacattgtaattgttgaagcaca 21630722  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 34714199 - 34714148
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    ||||||||||||||||||||||||| |||||||| |||| ||||||| ||||    
T  34714199 aagaaacaaaaatggaatatattacaatgaacactgtaagtgttgaagcaca 34714148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 17579741 - 17579693
Alignment:
Q  215 aaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    ||||||||||||||||||||||||  ||||| |||||||||||| ||||    
T  17579741 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagcaca 17579693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 300
Target Start/End: Original strand, 11461989 - 11462028
Alignment:
Q  261 acatcaaagtcaatcgatacctatacataaaaacgggctc 300  Q
    ||||||||||||||||||||| |||||||||| |||||||    
T  11461989 acatcaaagtcaatcgatacccatacataaaagcgggctc 11462028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 300
Target Start/End: Complemental strand, 20883596 - 20883557
Alignment:
Q  261 acatcaaagtcaatcgatacctatacataaaaacgggctc 300  Q
    ||||||||||||||||||||| |||||||||| |||||||    
T  20883596 acatcaaagtcaatcgatacccatacataaaagcgggctc 20883557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 14514217 - 14514169
Alignment:
Q  215 aaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    ||||||||||||||||||||||||  || || |||||||||||| ||||    
T  14514217 aaacaaaaatggaatatattactaaaaatactgtaattgttgaagcaca 14514169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 44; Significance: 5e-16; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 4548883 - 4548832
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  4548883 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagcaca 4548832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 5147315 - 5147366
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    ||||||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  5147315 aagaaacaaaaatggaatatattactatgaacaccgttattgttgaagcaca 5147366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 41973616 - 41973667
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  41973616 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagcaca 41973667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 5142898 - 5142946
Alignment:
Q  215 aaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    |||||||||||||||||||||||||||||||||| ||||||||| ||||    
T  5142898 aaacaaaaatggaatatattactatgaacaccgttattgttgaagcaca 5142946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 8360604 - 8360655
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    |||||||||||||||||||||||||||||||||  |||||||||||| ||||    
T  8360604 aagaaacaaaaatggaatatattactatgaacattgtaattgttgaagcaca 8360655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 24506294 - 24506243
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    |||||||||||||||||||||||||||||||||| || ||||||||| ||||    
T  24506294 aagaaacaaaaatggaatatattactatgaacactgtgattgttgaagcaca 24506243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 19468553 - 19468505
Alignment:
Q  215 aaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    ||||||||| ||||||||||||||||||||| |||||||||||| ||||    
T  19468553 aaacaaaaacggaatatattactatgaacactgtaattgttgaagcaca 19468505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 12697289 - 12697340
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    ||||||||||||||||||||||||| || ||||| |||||||||||| ||||    
T  12697289 aagaaacaaaaatggaatatattacgataaacactgtaattgttgaagcaca 12697340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 20002194 - 20002245
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    |||||| ||||||||| ||||||| |||||||||||||||||||||| ||||    
T  20002194 aagaaagaaaaatggagtatattaatatgaacaccgtaattgttgaagcaca 20002245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 261 - 300
Target Start/End: Original strand, 5142993 - 5143032
Alignment:
Q  261 acatcaaagtcaatcgatacctatacataaaaacgggctc 300  Q
    ||||||||||||||||||||| |||||||||| |||||||    
T  5142993 acatcaaagtcaatcgatacccatacataaaagcgggctc 5143032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 5e-16; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 12342891 - 12342840
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  12342891 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagcaca 12342840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 212 - 255
Target Start/End: Original strand, 19890155 - 19890198
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgtt 255  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  19890155 aagaaacaaaaatggaatatattactatgaacaccgtaattgtt 19890198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 29524409 - 29524358
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    |||||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  29524409 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaagcaca 29524358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 11203295 - 11203346
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||| ||||    
T  11203295 aagaaacaaaaatggaatatattactataaacactgtaattgttgaagcaca 11203346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 30696007 - 30695956
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    |||||||||||||||||||||||||||||||||  |||||||||||| ||||    
T  30696007 aagaaacaaaaatggaatatattactatgaacattgtaattgttgaagcaca 30695956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 33496024 - 33496075
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    |||||||||||||||||||||||||||||||||| ||||| |||||| ||||    
T  33496024 aagaaacaaaaatggaatatattactatgaacactgtaatggttgaagcaca 33496075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 7031679 - 7031628
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    |||||||||||||||||||||||||||  ||||| |||||||||||| ||||    
T  7031679 aagaaacaaaaatggaatatattactaaaaacactgtaattgttgaagcaca 7031628  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 220 - 263
Target Start/End: Complemental strand, 36801731 - 36801688
Alignment:
Q  220 aaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    |||||||||||||||||||||||||| || ||||||||||||||    
T  36801731 aaaatggaatatattactatgaacactgtgattgttgaaacaca 36801688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 228 - 263
Target Start/End: Complemental strand, 35215019 - 35214984
Alignment:
Q  228 atatattactatgaacaccgtaattgttgaaacaca 263  Q
    ||||||||||||||||||||||||||||||| ||||    
T  35215019 atatattactatgaacaccgtaattgttgaagcaca 35214984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 44; Significance: 5e-16; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 37298162 - 37298111
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    |||||||||||||||||||||||||||||||||||||||| |||||| ||||    
T  37298162 aagaaacaaaaatggaatatattactatgaacaccgtaatagttgaagcaca 37298111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 258
Target Start/End: Complemental strand, 37192591 - 37192545
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaa 258  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||    
T  37192591 aagaaacaaaaatagaatatattactatgaacaccgtaattgttgaa 37192545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 26206971 - 26206920
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    ||||||||||||||||||||||||||||||| || |||||||||||| ||||    
T  26206971 aagaaacaaaaatggaatatattactatgaatactgtaattgttgaagcaca 26206920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 43387843 - 43387894
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    |||||||||||||||||||||||||||  ||||| |||||||||||| ||||    
T  43387843 aagaaacaaaaatggaatatattactaaaaacactgtaattgttgaagcaca 43387894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 49094375 - 49094426
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    |||||||||||||| ||||||||||||| ||||| |||||||||||| ||||    
T  49094375 aagaaacaaaaatgaaatatattactataaacactgtaattgttgaagcaca 49094426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 16918470 - 16918422
Alignment:
Q  215 aaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    ||||||||||||||||||||||||  ||||| |||||||||||| ||||    
T  16918470 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagcaca 16918422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 212 - 263
Target Start/End: Original strand, 17400587 - 17400638
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    |||||||||||||| | |||||||| ||||||| ||||||||||||| ||||    
T  17400587 aagaaacaaaaatgaattatattaccatgaacaacgtaattgttgaagcaca 17400638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 212 - 258
Target Start/End: Complemental strand, 33386038 - 33385992
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaa 258  Q
    |||||||||||||||||||||||||||||||||| ||||||||||||    
T  33386038 aagaaacaaaaatggaatatattactatgaacactgtaattgttgaa 33385992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 215 - 263
Target Start/End: Original strand, 10773930 - 10773978
Alignment:
Q  215 aaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    ||||||||||||||||||||||||||||||| |||||||||||| ||||    
T  10773930 aaacaaaaatggaatatattactatgaacactgtaattgttgaagcaca 10773978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 18359754 - 18359703
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    |||| |||||||||||||||||||||||||| ||||||||||||||| ||||    
T  18359754 aagatacaaaaatggaatatattactatgaataccgtaattgttgaagcaca 18359703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 8300843 - 8300795
Alignment:
Q  215 aaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    ||||||||||||||||||||||||  ||||| |||||||||||| ||||    
T  8300843 aaacaaaaatggaatatattactaaaaacactgtaattgttgaagcaca 8300795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 212 - 256
Target Start/End: Original strand, 27766519 - 27766563
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgttg 256  Q
    |||||| ||||||||||||||||||||||||||  ||||||||||    
T  27766519 aagaaataaaaatggaatatattactatgaacattgtaattgttg 27766563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 215 - 263
Target Start/End: Complemental strand, 25858085 - 25858037
Alignment:
Q  215 aaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    ||||||||||| ||||||||||||  ||||| |||||||||||| ||||    
T  25858085 aaacaaaaatgtaatatattactaaaaacactgtaattgttgaagcaca 25858037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0472 (Bit Score: 36; Significance: 0.00000000003; HSPs: 1)
Name: scaffold0472
Description:

Target: scaffold0472; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 212 - 263
Target Start/End: Complemental strand, 7474 - 7423
Alignment:
Q  212 aagaaacaaaaatggaatatattactatgaacaccgtaattgttgaaacaca 263  Q
    |||||||||||||| ||||||||| ||||||||| |||||||||||| ||||    
T  7474 aagaaacaaaaatgaaatatattattatgaacactgtaattgttgaagcaca 7423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1872 times since January 2019
Visitors: 2394