View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend Query Query hiting target
Query hiting target's complemental strand Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0197_2D_low_31 (Length: 262)
Name: NF0197_2D_low_31
Description: NF0197_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0197_2D_low_31
Alignment Details
Target: chr1 (Bit Score: 156; Significance: 6e-83; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 156; E-Value: 6e-83
Query Start/End: Original strand, 1 - 160
Target Start/End: Complemental strand, 41826659 - 41826500
Alignment:
Q
1
ttggtgtagctttacttgcttggaatcaatctgaggaatttgtatatgcctactatgtgcttcgcacaatttcgtatataatcagtaaaggaagtatttt
100
Q
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
T
41826659
ttggtgtagctttacttgcttggaatcaatctgaggaatttgtatatgcatactatgtgcttcgcacaatttcgtatataatcagtaaaggaagtatttt
41826560
T
Q
101
ctgcatctctgtcgcgtatgtggtgagatttttatcttaatttaactaaattttgaaaag
160
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
41826559
ctgcatctctgtcgcgtatgtggtgagatttttatcttaatttaactaaattttgaaaag
41826500
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 97; E-Value: 9e-48
Query Start/End: Original strand, 5 - 133
Target Start/End: Complemental strand, 41820008 - 41819880
Alignment:
Q
5
tgtagctttacttgcttggaatcaatctgaggaatttgtatatgcctactatgtgcttcgcacaatttcgtatataatcagtaaaggaagtattttctgc
104
Q
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||| |||| |||||| |||||||||| ||||||
T
41820008
tgtagctttacttgcttggaatcaatctaaggaatttgtatatgcctactatgtgcttcgcacattttcgcatattatcagtcaaggaagtatcttctgc
41819909
T
Q
105
atctctgtcgcgtatgtggtgagattttt
133
Q
|| |||||||||||||||||||| |||||
T
41819908
atttctgtcgcgtatgtggtgaggttttt
41819880
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 168 - 243
Target Start/End: Original strand, 41826710 - 41826785
Alignment:
Q
168
gaatcatacgtaataatgagagtttacactatcaatcaatcataaccgttagatcattgaaaacgttcaacttttt
243
Q
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
T
41826710
gaatcatacgtaataatgagagtttacactatcaatcaatcataatcgttagatcattgaaaacattcaacttttt
41826785
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr5 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 190 - 229
Target Start/End: Complemental strand, 4076104 - 4076065
Alignment:
Q
190
tttacactatcaatcaatcataaccgttagatcattgaaa
229
Q
||||||||||||||||||||||| ||||||||||||||||
T
4076104
tttacactatcaatcaatcataatcgttagatcattgaaa
4076065
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 1148500 - 1148466
Alignment:
Q
1
ttggtgtagctttacttgcttggaatcaatctgag
35
Q
|||||||||||||||||||||||||||||||||||
T
1148500
ttggtgtagctttacttgcttggaatcaatctgag
1148466
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr3 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 1 - 30
Target Start/End: Original strand, 2830514 - 2830543
Alignment:
Q
1
ttggtgtagctttacttgcttggaatcaat
30
Q
||||||||||||||||||||||||||||||
T
2830514
ttggtgtagctttacttgcttggaatcaat
2830543
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 193 - 230
Target Start/End: Original strand, 33657402 - 33657439
Alignment:
Q
193
acactatcaatcaatcataaccgttagatcattgaaaa
230
Q
|||||||||||||||||||||||| | |||||||||||
T
33657402
acactatcaatcaatcataaccgtcaaatcattgaaaa
33657439
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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