View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0197_2D_low_4 (Length: 612)
Name: NF0197_2D_low_4
Description: NF0197_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0197_2D_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 160 - 611
Target Start/End: Original strand, 6703330 - 6703777
Alignment:
| Q |
160 |
gttattcatcattatagtcgattttctaggacattttatcaagaatattatgatagagtacctagtgttatatggttggaggatgatgttgaaatcgaat |
259 |
Q |
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| T |
6703330 |
gttattcatcattatagtcgattttctaggacattttatcaagaatattatgatagagtacctagtgttatatggttggaggatgatgttgaaatcgatt |
6703429 |
T |
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| Q |
260 |
tctttcacatttaaggagttgaaataattttagtggaaacatgtcatattttcttaaaaatacaaggttgattgagaagtatatagtctataaagtgaag |
359 |
Q |
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| T |
6703430 |
tctttcacgtttaaggagtcgaaataattttagtggaaacatgtaatattttcttaaaaatacaaggttgattgagaagtatatactctataaagtaaag |
6703529 |
T |
|
| Q |
360 |
caata-attaatttcatttaattagtttgtttgcttaagaatccatatctctatgaacaatagtgtagaagagaagaacgattgtgcaaatggggagaac |
458 |
Q |
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| T |
6703530 |
cactagtttcatttaattttattagtttgtttgcttaaga------atctctatgagcaatggtgtagaagagaagaaggatggtgcaaatggggagaac |
6703623 |
T |
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| Q |
459 |
aagagaacaagacctaaactatctcagatatatggaacaagaaaagctaaacctatggtagcataagctaaatgaaaatgaaaagttagcatctaatcat |
558 |
Q |
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| T |
6703624 |
aagagaacaagacctaacttatctcagatatatggaacaagaaaagctaaatctatggtagcatcatctaaataaaaatgataagttatcatctaatcat |
6703723 |
T |
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| Q |
559 |
tgtt-nnnnnnncttagaaattttatcctaggtcagatctagctatagatatct |
611 |
Q |
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| T |
6703724 |
tgttaaaaaaaacgtagatattttatcctaggtcagatctagctatagatatct |
6703777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 9 - 70
Target Start/End: Original strand, 6703178 - 6703239
Alignment:
| Q |
9 |
atggacatcagaatttgtgtttatgccattgatcatattaatttggtatgatattcttccaa |
70 |
Q |
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| T |
6703178 |
atggacatcagaatttgtgtttatgccattgatcatattaatttggtatgatattcttccaa |
6703239 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 182 - 222
Target Start/End: Original strand, 8731061 - 8731101
Alignment:
| Q |
182 |
tttctaggacattttatcaagaatattatgatagagtacct |
222 |
Q |
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| T |
8731061 |
tttctaggaaattttatcaagaatatcttgatagagtacct |
8731101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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