View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0197_2D_low_5 (Length: 486)
Name: NF0197_2D_low_5
Description: NF0197_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0197_2D_low_5 |
 | |
|
| [»] scaffold0184 (2 HSPs) |
| | |
|
| [»] scaffold0078 (1 HSPs) |
| | |
|
Alignment Details
Target: chr7 (Bit Score: 425; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 20 - 468
Target Start/End: Complemental strand, 48398688 - 48398240
Alignment:
| Q |
20 |
aacccaaccttaacatcctcggttaacataacagcattcatcttttgctctgcataaagtggccaaaccactaaaggcaccccattaacaacactttcta |
119 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48398688 |
aacccaaccttaacatcctcagttaacataacagcattcatcttttgctctgcataaagtggccaaaccactaaaggcaccccattaacaacactttcta |
48398589 |
T |
|
| Q |
120 |
gaactgaattccaaccacaatgagttaaaaacccaccagttgacccatgggccaaaacctgtggttgtggggcccaagatgacacaactagaccccttcc |
219 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48398588 |
gaactgaattccaaccacaatgagttaaaaacccaccagttgacccatgtgccaaaacctgtggttgtggggcccaagatgacacaactagaccccttcc |
48398489 |
T |
|
| Q |
220 |
tttagttctctccaaaaatccatttggtaaaaaatcaaaaggatcagaatgtgtttcagcactgaagtaagaagcattagcaactttatcatttggactt |
319 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48398488 |
tttagttctctccaaaaatccatttggtaaaaaatcaaatggatcagaatctgtttcagcactgaagtaagaagcattagcaactttatcatttggactt |
48398389 |
T |
|
| Q |
320 |
ctaacaacccataaaaaccgttgctcactcatttccaagccaagtgccaattcaactatctgtttactagagagggtcccaccacttccaaaagaaacaa |
419 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
48398388 |
ctaacaacccataaaaaccgttgctcactcatttccaagccaagtgccaattcaactatctgtttactagagagggtcccaccacttccaaaagaaacaa |
48398289 |
T |
|
| Q |
420 |
acagaacactcccgtgtgcttgattatctaaccatttcaaactctctga |
468 |
Q |
| |
|
||||||||||||| |||| |||||||||||||||||||||||||||||| |
|
|
| T |
48398288 |
acagaacactcccatgtggttgattatctaaccatttcaaactctctga |
48398240 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 94 - 162
Target Start/End: Complemental strand, 16490993 - 16490925
Alignment:
| Q |
94 |
aggcaccccattaacaacactttctagaactgaattccaaccacaatgagttaaaaacccaccagttga |
162 |
Q |
| |
|
|||||| |||| ||||||||||| || ||||||||||||||||| |||| |||||||||||||||||| |
|
|
| T |
16490993 |
aggcacaccatagacaacactttcaagtactgaattccaaccacagtgagataaaaacccaccagttga |
16490925 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 162
Target Start/End: Complemental strand, 41562655 - 41562617
Alignment:
| Q |
124 |
tgaattccaaccacaatgagttaaaaacccaccagttga |
162 |
Q |
| |
|
|||||||||||||||||||| |||||| ||||||||||| |
|
|
| T |
41562655 |
tgaattccaaccacaatgagataaaaatccaccagttga |
41562617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 8e-19; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 8e-19
Query Start/End: Original strand, 49 - 261
Target Start/End: Original strand, 10208896 - 10209108
Alignment:
| Q |
49 |
aacagcattcatcttttgctctgcataaagtggccaaaccactaaaggcaccccattaacaacactttctagaactgaattccaaccacaatgagttaaa |
148 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||| | | |||||||| ||||| || ||||| || ||| ||||||||||||||||||| | | | |
|
|
| T |
10208896 |
aacagcattcatcttttgctcagcatagagtggccatgcaatcaaaggcacaccattcaccacactctcaagagttgaattccaaccacaatgactcaca |
10208995 |
T |
|
| Q |
149 |
aacccaccagttgacccatgggccaaaacctgtggttgtggggcccaagatgacacaactagaccccttcctttagttctctccaaaaatccatttggta |
248 |
Q |
| |
|
||||| ||| |||| ||| |||||| |||| ||||||||||||| ||| | |||| |||| | |||||||| ||||| ||| |||||||||| |
|
|
| T |
10208996 |
aaccctccaattgagatatgactcaaaacttgtgcttgtggggcccaatatgggagcactaaacccttccctttagtcctctctgtaaaaccatttggta |
10209095 |
T |
|
| Q |
249 |
aaaaatcaaaagg |
261 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
10209096 |
aaaattcaaaagg |
10209108 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 49 - 261
Target Start/End: Original strand, 10201823 - 10202035
Alignment:
| Q |
49 |
aacagcattcatcttttgctctgcataaagtggccaaaccactaaaggcaccccattaacaacactttctagaactgaattccaaccacaatgagttaaa |
148 |
Q |
| |
|
||||||||||||||||||||| ||||| |||||||| | | |||||||| ||||| || ||||| || ||| ||||||||||||||||||| | | | |
|
|
| T |
10201823 |
aacagcattcatcttttgctcagcatagagtggccatgcaatcaaaggcacaccattcaccacactctcaagagttgaattccaaccacaatgactcaca |
10201922 |
T |
|
| Q |
149 |
aacccaccagttgacccatgggccaaaacctgtggttgtggggcccaagatgacacaactagaccccttcctttagttctctccaaaaatccatttggta |
248 |
Q |
| |
|
||||| ||| |||| ||| |||||| |||| ||||||||||||| ||| | |||| |||| | |||||||| ||||| | | |||||||||| |
|
|
| T |
10201923 |
aaccctccaattgagatatgactcaaaacttgtgcttgtggggcccaatatgggagcactaaacccttccctttagtcctctctatgtaaccatttggta |
10202022 |
T |
|
| Q |
249 |
aaaaatcaaaagg |
261 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
10202023 |
aaaattcaaaagg |
10202035 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 124 - 162
Target Start/End: Original strand, 33005117 - 33005155
Alignment:
| Q |
124 |
tgaattccaaccacaatgagttaaaaacccaccagttga |
162 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||||||||| |
|
|
| T |
33005117 |
tgaattccaaccacaatgtgttaaaaatccaccagttga |
33005155 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 844998 - 845059
Alignment:
| Q |
101 |
ccattaacaacactttctagaactgaattccaaccacaatgagttaaaaacccaccagttga |
162 |
Q |
| |
|
||||| ||||||||||| || |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
844998 |
ccatttacaacactttcaagtgttgaattccaaccacaatgagttaaaaacccaccaattga |
845059 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 101 - 162
Target Start/End: Original strand, 870282 - 870343
Alignment:
| Q |
101 |
ccattaacaacactttctagaactgaattccaaccacaatgagttaaaaacccaccagttga |
162 |
Q |
| |
|
||||| ||||||||||| || |||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
870282 |
ccatttacaacactttcaagtgttgaattccaaccacaatgagttaaaaacccaccaattga |
870343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 124 - 168
Target Start/End: Original strand, 8294449 - 8294493
Alignment:
| Q |
124 |
tgaattccaaccacaatgagttaaaaacccaccagttgacccatg |
168 |
Q |
| |
|
|||| |||||||||||||| |||||||||||||| |||| ||||| |
|
|
| T |
8294449 |
tgaactccaaccacaatgacttaaaaacccaccaattgatccatg |
8294493 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184 (Bit Score: 37; Significance: 0.00000000001; HSPs: 2)
Name: scaffold0184
Description:
Target: scaffold0184; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 110 - 254
Target Start/End: Original strand, 11635 - 11779
Alignment:
| Q |
110 |
acactttctagaactgaattccaaccacaatgagttaaaaacccaccagttgacccatgggccaaaacctgtggttgtggggcccaagatgacacaacta |
209 |
Q |
| |
|
||||| || |||||||||||||||||||||||||| ||||| ||||| |||||||||| ||||| |||| ||| || |||||| | ||||||| |
|
|
| T |
11635 |
acactctcaagaactgaattccaaccacaatgagtcaaaaatgcaccaattgacccatgactcaaaatttgtgtttgaggtgcccaattaggtacaacta |
11734 |
T |
|
| Q |
210 |
gaccccttcctttagttctctccaaaaatccatttggtaaaaaat |
254 |
Q |
| |
|
|| ||||||||||||||| ||||| || ||||||||||||| |
|
|
| T |
11735 |
atccttgtcctttagttctctctaaaaacccttttggtaaaaaat |
11779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0184; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 157
Target Start/End: Original strand, 15197 - 15233
Alignment:
| Q |
121 |
aactgaattccaaccacaatgagttaaaaacccacca |
157 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
15197 |
aactgaattccaaccacaatgacttaaaaatccacca |
15233 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0078 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0078
Description:
Target: scaffold0078; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 121 - 157
Target Start/End: Complemental strand, 57647 - 57611
Alignment:
| Q |
121 |
aactgaattccaaccacaatgagttaaaaacccacca |
157 |
Q |
| |
|
|||||||||||||||||||||| ||||||| |||||| |
|
|
| T |
57647 |
aactgaattccaaccacaatgacttaaaaatccacca |
57611 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University