View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0197_2D_low_9 (Length: 425)

Name: NF0197_2D_low_9
Description: NF0197_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0197_2D_low_9
NF0197_2D_low_9
[»] chr7 (4 HSPs)
chr7 (51-407)||(48398240-48398596)
chr7 (51-101)||(16490925-16490975)
chr7 (19-56)||(48397641-48397678)
chr7 (63-101)||(41562617-41562655)
[»] scaffold0184 (2 HSPs)
scaffold0184 (58-193)||(11644-11779)
scaffold0184 (60-96)||(15197-15233)
[»] chr6 (3 HSPs)
chr6 (63-101)||(845021-845059)
chr6 (63-101)||(870305-870343)
chr6 (63-107)||(8294449-8294493)
[»] chr8 (2 HSPs)
chr8 (63-101)||(33005117-33005155)
chr8 (63-200)||(10208971-10209108)
[»] scaffold0078 (1 HSPs)
scaffold0078 (60-96)||(57611-57647)


Alignment Details
Target: chr7 (Bit Score: 337; Significance: 0; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 337; E-Value: 0
Query Start/End: Original strand, 51 - 407
Target Start/End: Complemental strand, 48398596 - 48398240
Alignment:
Q  51 actttctagaactgaattccaaccacaatgagttaaaaacccaccagttgacccatgggccaaaacctgtggttgtggggcccaagatgacacaactaga 150  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  48398596 actttctagaactgaattccaaccacaatgagttaaaaacccaccagttgacccatgtgccaaaacctgtggttgtggggcccaagatgacacaactaga 48398497  T
Q  151 ccccttcctttagttctctccaaaaatccatttggtaaaaaatcaaaaggatcagaatgtgtttcagcactgaagtaagaagcattagcaactttatcat 250  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||    
T  48398496 ccccttcctttagttctctccaaaaatccatttggtaaaaaatcaaatggatcagaatctgtttcagcactgaagtaagaagcattagcaactttatcat 48398397  T
Q  251 ttggacttctaacaacccataaaaaccgttgctcactcatttccaagccaagtgccaattcaactatctgtttactagagagggtcccaccacttccaaa 350  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  48398396 ttggacttctaacaacccataaaaaccgttgctcactcatttccaagccaagtgccaattcaactatctgtttactagagagggtcccaccacttccaaa 48398297  T
Q  351 agaaacaaacagaacactcccgtgtgcttgattatctaaccatttcaaactctctga 407  Q
    ||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||    
T  48398296 agaaacaaacagaacactcccatgtggttgattatctaaccatttcaaactctctga 48398240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 51 - 101
Target Start/End: Complemental strand, 16490975 - 16490925
Alignment:
Q  51 actttctagaactgaattccaaccacaatgagttaaaaacccaccagttga 101  Q
    |||||| || ||||||||||||||||| |||| ||||||||||||||||||    
T  16490975 actttcaagtactgaattccaaccacagtgagataaaaacccaccagttga 16490925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 19 - 56
Target Start/End: Original strand, 48397641 - 48397678
Alignment:
Q  19 ttcttcaatctctaccaaagtccatttcacatactttc 56  Q
    ||||||||||||||||||||| ||||||||||||||||    
T  48397641 ttcttcaatctctaccaaagttcatttcacatactttc 48397678  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 101
Target Start/End: Complemental strand, 41562655 - 41562617
Alignment:
Q  63 tgaattccaaccacaatgagttaaaaacccaccagttga 101  Q
    |||||||||||||||||||| |||||| |||||||||||    
T  41562655 tgaattccaaccacaatgagataaaaatccaccagttga 41562617  T

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Target: scaffold0184 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: scaffold0184
Description:

Target: scaffold0184; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 58 - 193
Target Start/End: Original strand, 11644 - 11779
Alignment:
Q  58 agaactgaattccaaccacaatgagttaaaaacccaccagttgacccatgggccaaaacctgtggttgtggggcccaagatgacacaactagaccccttc 157  Q
    |||||||||||||||||||||||||| |||||  ||||| ||||||||||   |||||  |||| ||| || ||||||   |  |||||||  ||   ||    
T  11644 agaactgaattccaaccacaatgagtcaaaaatgcaccaattgacccatgactcaaaatttgtgtttgaggtgcccaattaggtacaactaatccttgtc 11743  T
Q  158 ctttagttctctccaaaaatccatttggtaaaaaat 193  Q
    ||||||||||||| ||||| || |||||||||||||    
T  11744 ctttagttctctctaaaaacccttttggtaaaaaat 11779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0184; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Original strand, 15197 - 15233
Alignment:
Q  60 aactgaattccaaccacaatgagttaaaaacccacca 96  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  15197 aactgaattccaaccacaatgacttaaaaatccacca 15233  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 101
Target Start/End: Original strand, 845021 - 845059
Alignment:
Q  63 tgaattccaaccacaatgagttaaaaacccaccagttga 101  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  845021 tgaattccaaccacaatgagttaaaaacccaccaattga 845059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 63 - 101
Target Start/End: Original strand, 870305 - 870343
Alignment:
Q  63 tgaattccaaccacaatgagttaaaaacccaccagttga 101  Q
    |||||||||||||||||||||||||||||||||| ||||    
T  870305 tgaattccaaccacaatgagttaaaaacccaccaattga 870343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 63 - 107
Target Start/End: Original strand, 8294449 - 8294493
Alignment:
Q  63 tgaattccaaccacaatgagttaaaaacccaccagttgacccatg 107  Q
    |||| |||||||||||||| |||||||||||||| |||| |||||    
T  8294449 tgaactccaaccacaatgacttaaaaacccaccaattgatccatg 8294493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 63 - 101
Target Start/End: Original strand, 33005117 - 33005155
Alignment:
Q  63 tgaattccaaccacaatgagttaaaaacccaccagttga 101  Q
    |||||||||||||||||| |||||||| |||||||||||    
T  33005117 tgaattccaaccacaatgtgttaaaaatccaccagttga 33005155  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 63 - 200
Target Start/End: Original strand, 10208971 - 10209108
Alignment:
Q  63 tgaattccaaccacaatgagttaaaaacccaccagttgacccatgggccaaaacctgtggttgtggggcccaagatgacacaactagaccccttccttta 162  Q
    ||||||||||||||||||| | | |||||| ||| ||||   |||   |||||| |||| ||||||||||||| |||  |  |||| |||| | ||||||    
T  10208971 tgaattccaaccacaatgactcacaaaccctccaattgagatatgactcaaaacttgtgcttgtggggcccaatatgggagcactaaacccttcccttta 10209070  T
Q  163 gttctctccaaaaatccatttggtaaaaaatcaaaagg 200  Q
    || |||||   ||| |||||||||||||| ||||||||    
T  10209071 gtcctctctgtaaaaccatttggtaaaaattcaaaagg 10209108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0078 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0078
Description:

Target: scaffold0078; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 60 - 96
Target Start/End: Complemental strand, 57647 - 57611
Alignment:
Q  60 aactgaattccaaccacaatgagttaaaaacccacca 96  Q
    |||||||||||||||||||||| ||||||| ||||||    
T  57647 aactgaattccaaccacaatgacttaaaaatccacca 57611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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