View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0197_high_1 (Length: 619)
Name: NF0197_high_1
Description: NF0197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0197_high_1 |
 | |
|
| [»] scaffold0340 (1 HSPs) |
| | |
|
Alignment Details
Target: chr4 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 29 - 612
Target Start/End: Original strand, 972824 - 973408
Alignment:
| Q |
29 |
aacaataacaatagttacaattaaaatcacataaattagtccctttgaagtatgatctcggacattcacatgattacattttatattcttaagttaaaca |
128 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
972824 |
aacaataacaatagttacaattaaaatcacataaattagtccctttgaagtatgatctcggacattcacatgattacattttatattctcaagttaaaca |
972923 |
T |
|
| Q |
129 |
tgaacataacttagttaaactactacatattaaaaagttattggacgtctcttgtagattgttgtattctggaactttgaaaagattcattacacaaata |
228 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
972924 |
tgaacataacttagttaaactactacatattaaaaagttattggacgtctcttgtagattgttgtattctggaactttgaaatgattcattacacaaata |
973023 |
T |
|
| Q |
229 |
tgtatcttccaatataataccaagtctccgctagctcaactctgttcaattacagcttctggtttgtatggtctgtaaccgatgcaaaggccaatggtta |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
973024 |
tgtatcttccaatataataccaagtctccgctagctcaactctgttcaattacagcttctggtttgtatggtctgtaaccgatgcaaaggccaatggtta |
973123 |
T |
|
| Q |
329 |
gctatagcagatgaatatcgaaggtgaaatttacctttcagttccaactttgtctagcaggaatgg-ttttttatatacattgactaattgcaaaatttc |
427 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
973124 |
gctatagcagatgaatatccaaggtgaaatttacctttcagttccaactttgtctagcaggaatggtttttttatatacattgactaattgcaaaatttc |
973223 |
T |
|
| Q |
428 |
catgccaaataatattgataaaaatgacatattaactttgaatagagcaggaagtcttgtgtcttagattctacgacgacaatgacagtgaataacactt |
527 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
973224 |
catgccaaataatattgataaaaatgacatgttaactttgaatagagcaggaagtcttgtgtcttagattctacgacgacaatgacagtgaataacactt |
973323 |
T |
|
| Q |
528 |
ttggcctttggattgtgacacgacaggcttgatctttctctgtgttggtatggtctaatatagttcaactcctttagtataatct |
612 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
973324 |
ttggcctttggattgtgacacgacaggcttgatctttctctgagttggtatggtctaatatagttcaactcctttagtataatct |
973408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 5e-33; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 271 - 492
Target Start/End: Original strand, 8527693 - 8527934
Alignment:
| Q |
271 |
tgttcaattacagcttctggtttgtatggtctgtaaccgatgcaaaggccaatggttagctatagcagatgaatatcgaaggtg--------aaatttac |
362 |
Q |
| |
|
|||||||||||||||||||||||||||| ||||| || ||| |||||||||| ||||||||||||||| |||||||||||||| |||||||| |
|
|
| T |
8527693 |
tgttcaattacagcttctggtttgtatgttctgtttccaatgaaaaggccaattgttagctatagcagaggaatatcgaaggtgaaatgggtaaatttac |
8527792 |
T |
|
| Q |
363 |
ctttcagttccaactttgtctagcaggaatggttttttatat--------acattg-----actaattgcaaaatttccatgccaaataatattgataaa |
449 |
Q |
| |
|
|| |||| ||| |||||||||||| ||||| ||||||||| |||||| |||| ||||||||||| |||||||||||||| | ||||| |
|
|
| T |
8527793 |
ctcgtagtttcaattttgtctagcagcaatgg-tttttatattaccagcgacattgcatcaactagttgcaaaattttcatgccaaataatactaataaa |
8527891 |
T |
|
| Q |
450 |
aatgacatattaactttgaatagagcaggaagtcttgtgtctt |
492 |
Q |
| |
|
|||| || ||||| |||||||||||||||||||||||||||| |
|
|
| T |
8527892 |
aatggcaccttaaccttgaatagagcaggaagtcttgtgtctt |
8527934 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 518 - 612
Target Start/End: Original strand, 8528322 - 8528416
Alignment:
| Q |
518 |
aataacacttttggcctttggattgtgacacgacaggcttgatctttctctgtgttggtatggtctaatatagttcaactcctttagtataatct |
612 |
Q |
| |
|
||||||| ||| ||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
8528322 |
aataacattttcggcgtttggtttgtgacacgacaggcttgatctttctatgtgttggtatggtctaatatagttcaactcatttagtataatct |
8528416 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 266 - 344
Target Start/End: Original strand, 8369047 - 8369125
Alignment:
| Q |
266 |
aactctgttcaattacagcttctggtttgtatggtctgtaaccgatgcaaaggccaatggttagctatagcagatgaat |
344 |
Q |
| |
|
|||||| ||||||| ||||||||||||||| |||||||||||| ||||| ||| || | |||||| |||||||| |||| |
|
|
| T |
8369047 |
aactctcttcaattgcagcttctggtttgtgtggtctgtaaccaatgcataggtcatttgttagccatagcagaggaat |
8369125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 8410349 - 8410406
Alignment:
| Q |
273 |
ttcaattacagcttctggtttgtatggtctgtaaccgatgcaaaggccaatggttagc |
330 |
Q |
| |
|
|||||||| |||||||||||||| ||| |||| || |||||||||||||| |||||| |
|
|
| T |
8410349 |
ttcaattaaagcttctggtttgtgtggactgtgacgaatgcaaaggccaattgttagc |
8410406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0340 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0340
Description:
Target: scaffold0340; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 454
Target Start/End: Complemental strand, 3186 - 3145
Alignment:
| Q |
413 |
taattgcaaaatttccatgccaaataatattgataaaaatga |
454 |
Q |
| |
|
||||||||||||||||||| ||||||||| || ||||||||| |
|
|
| T |
3186 |
taattgcaaaatttccatgacaaataataatgttaaaaatga |
3145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 947 times since January 2019
Visitors: 1518