View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0197_high_9 (Length: 333)
Name: NF0197_high_9
Description: NF0197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0197_high_9 |
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Alignment Details
Target: chr4 (Bit Score: 282; Significance: 1e-158; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 282; E-Value: 1e-158
Query Start/End: Original strand, 29 - 322
Target Start/End: Complemental strand, 43578913 - 43578620
Alignment:
| Q |
29 |
acctttatgagtgatccaatgcaagcttatagaatgtgcatgaaaagatttatgagtgaagtgattaattgaagaaggttttaaggaataagagcaagta |
128 |
Q |
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| T |
43578913 |
acctttatgagtgatccaatgcaagcttatagaatgtgcatgaaaagatttatgagtgaagtgattaattgaagaaggttttaaggaataagagtaagta |
43578814 |
T |
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| Q |
129 |
ctagtttttagactagctaagcaataaaaaacgtgtaaggtttatgatagctaggcagataagttttaactcaacaagattctgattcctgttttcagag |
228 |
Q |
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| T |
43578813 |
ctagtttttagactagctaagcaataaaaaacgtgtaaggtttatgatagctaggcagataagttttaactcaacaagattctgattcctgttttcagag |
43578714 |
T |
|
| Q |
229 |
aattagaatccatgtgtcacattctttggctgaaccaacaatttccagacaccttggttcaatcataatcaacaattcaaatttagcaacagct |
322 |
Q |
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|||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43578713 |
aattagaatccatgtgtcgcattctttagctgaaccaacaatttccagacaccttggttcaatcataatcaacaattcaaatttagcaacagct |
43578620 |
T |
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