View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
Legend
Query
Query hiting target
Query hiting target's complemental strand
Query's complemental strand hiting target
Query's complemental strand hiting target's complemental strand
Alignment Overview
Query: NF0197_low_1 (Length: 619)
Name: NF0197_low_1
Description: NF0197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
[» ] NF0197_low_1
[» ] scaffold0340 (1 HSPs)
Alignment Details
Target: chr4 (Bit Score: 557; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 557; E-Value: 0
Query Start/End: Original strand, 29 - 612
Target Start/End: Original strand, 972824 - 973408
Alignment:
Q
29
aacaataacaatagttacaattaaaatcacataaattagtccctttgaagtatgatctcggacattcacatgattacattttatattcttaagttaaaca
128
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
T
972824
aacaataacaatagttacaattaaaatcacataaattagtccctttgaagtatgatctcggacattcacatgattacattttatattctcaagttaaaca
972923
T
Q
129
tgaacataacttagttaaactactacatattaaaaagttattggacgtctcttgtagattgttgtattctggaactttgaaaagattcattacacaaata
228
Q
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
T
972924
tgaacataacttagttaaactactacatattaaaaagttattggacgtctcttgtagattgttgtattctggaactttgaaatgattcattacacaaata
973023
T
Q
229
tgtatcttccaatataataccaagtctccgctagctcaactctgttcaattacagcttctggtttgtatggtctgtaaccgatgcaaaggccaatggtta
328
Q
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
973024
tgtatcttccaatataataccaagtctccgctagctcaactctgttcaattacagcttctggtttgtatggtctgtaaccgatgcaaaggccaatggtta
973123
T
Q
329
gctatagcagatgaatatcgaaggtgaaatttacctttcagttccaactttgtctagcaggaatgg-ttttttatatacattgactaattgcaaaatttc
427
Q
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
T
973124
gctatagcagatgaatatccaaggtgaaatttacctttcagttccaactttgtctagcaggaatggtttttttatatacattgactaattgcaaaatttc
973223
T
Q
428
catgccaaataatattgataaaaatgacatattaactttgaatagagcaggaagtcttgtgtcttagattctacgacgacaatgacagtgaataacactt
527
Q
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
T
973224
catgccaaataatattgataaaaatgacatgttaactttgaatagagcaggaagtcttgtgtcttagattctacgacgacaatgacagtgaataacactt
973323
T
Q
528
ttggcctttggattgtgacacgacaggcttgatctttctctgtgttggtatggtctaatatagttcaactcctttagtataatct
612
Q
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
T
973324
ttggcctttggattgtgacacgacaggcttgatctttctctgagttggtatggtctaatatagttcaactcctttagtataatct
973408
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7 (Bit Score: 73; Significance: 5e-33; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 271 - 492
Target Start/End: Original strand, 8527693 - 8527934
Alignment:
Q
271
tgttcaattacagcttctggtttgtatggtctgtaaccgatgcaaaggccaatggttagctatagcagatgaatatcgaaggtg--------aaatttac
362
Q
|||||||||||||||||||||||||||| ||||| || ||| |||||||||| ||||||||||||||| |||||||||||||| ||||||||
T
8527693
tgttcaattacagcttctggtttgtatgttctgtttccaatgaaaaggccaattgttagctatagcagaggaatatcgaaggtgaaatgggtaaatttac
8527792
T
Q
363
ctttcagttccaactttgtctagcaggaatggttttttatat--------acattg-----actaattgcaaaatttccatgccaaataatattgataaa
449
Q
|| |||| ||| |||||||||||| ||||| ||||||||| |||||| |||| ||||||||||| |||||||||||||| | |||||
T
8527793
ctcgtagtttcaattttgtctagcagcaatgg-tttttatattaccagcgacattgcatcaactagttgcaaaattttcatgccaaataatactaataaa
8527891
T
Q
450
aatgacatattaactttgaatagagcaggaagtcttgtgtctt
492
Q
|||| || ||||| ||||||||||||||||||||||||||||
T
8527892
aatggcaccttaaccttgaatagagcaggaagtcttgtgtctt
8527934
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 518 - 612
Target Start/End: Original strand, 8528322 - 8528416
Alignment:
Q
518
aataacacttttggcctttggattgtgacacgacaggcttgatctttctctgtgttggtatggtctaatatagttcaactcctttagtataatct
612
Q
||||||| ||| ||| ||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||
T
8528322
aataacattttcggcgtttggtttgtgacacgacaggcttgatctttctatgtgttggtatggtctaatatagttcaactcatttagtataatct
8528416
T
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[
HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 266 - 344
Target Start/End: Original strand, 8369047 - 8369125
Alignment:
Q
266
aactctgttcaattacagcttctggtttgtatggtctgtaaccgatgcaaaggccaatggttagctatagcagatgaat
344
Q
|||||| ||||||| ||||||||||||||| |||||||||||| ||||| ||| || | |||||| |||||||| ||||
T
8369047
aactctcttcaattgcagcttctggtttgtgtggtctgtaaccaatgcataggtcatttgttagccatagcagaggaat
8369125
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 273 - 330
Target Start/End: Original strand, 8410349 - 8410406
Alignment:
Q
273
ttcaattacagcttctggtttgtatggtctgtaaccgatgcaaaggccaatggttagc
330
Q
|||||||| |||||||||||||| ||| |||| || |||||||||||||| ||||||
T
8410349
ttcaattaaagcttctggtttgtgtggactgtgacgaatgcaaaggccaattgttagc
8410406
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
Target: scaffold0340 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold0340
Description:
Target: scaffold0340; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 413 - 454
Target Start/End: Complemental strand, 3186 - 3145
Alignment:
Q
413
taattgcaaaatttccatgccaaataatattgataaaaatga
454
Q
||||||||||||||||||| ||||||||| || |||||||||
T
3186
taattgcaaaatttccatgacaaataataatgttaaaaatga
3145
T
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HSP Overview ] [
Target Overview ] [
Alignment Overview ]
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