View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0197_low_10 (Length: 322)

Name: NF0197_low_10
Description: NF0197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0197_low_10
NF0197_low_10
[»] chr7 (1 HSPs)
chr7 (1-295)||(6502662-6502956)
[»] chr8 (2 HSPs)
chr8 (153-254)||(40182691-40182793)
chr8 (152-254)||(38341831-38341934)
[»] chr1 (1 HSPs)
chr1 (154-252)||(19607204-19607304)
[»] chr3 (2 HSPs)
chr3 (153-254)||(37549926-37550028)
chr3 (159-195)||(48507457-48507493)
[»] chr5 (1 HSPs)
chr5 (214-255)||(29465757-29465798)
[»] chr2 (2 HSPs)
chr2 (170-254)||(41873557-41873642)
chr2 (213-254)||(43038447-43038488)
[»] chr4 (2 HSPs)
chr4 (160-207)||(29765808-29765856)
chr4 (162-194)||(51468602-51468634)


Alignment Details
Target: chr7 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 1 - 295
Target Start/End: Original strand, 6502662 - 6502956
Alignment:
Q  1 cttttgaaatccttccacgaattacaggggaatccacgcgaaccaattcgcggttcacactatgtcaagagaactatgtgactgatttagtttgttagtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6502662 cttttgaaatccttccacgaattacaggggaatccacgcgaaccaattcgcggttcacactatgtcaagagaactatgtgactgatttagtttgttagtt 6502761  T
Q  101 tgtatggctgggtcattctcttggttaacaatgtaagggatcatcttctgaatattgtaaaggggaacccttggaggagagattctctcatattcattct 200  Q
    ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||    
T  6502762 tgtatggctgggtcattcttttggttaacagtgtaagggatcatcttctgaatattgtaaaggggaacccttagaggagagattctctcatattcattct 6502861  T
Q  201 tattttcatattcaagtgttctttctattccactcaattcttgggttcctaacagcatattgattggtaaaaaactgagattgatgagctatgtg 295  Q
    ||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6502862 tattttcatattcaagttttctttctattccgctcaattcttgggttcctaacagcatattgattggtaaaaaactgagattgatgagctatgtg 6502956  T

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Target: chr8 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 153 - 254
Target Start/End: Complemental strand, 40182793 - 40182691
Alignment:
Q  153 tattgtaaaggggaacccttggaggagagattctctcatattcattcttattttc-atattcaagtgttctttctattccactcaattcttgggttccta 251  Q
    |||||| || ||||| ||||  ||||||||||||||| | ||| |||||||||||  ||||||| |||||||||| ||||| ||||||||| ||| ||||    
T  40182793 tattgtgaaagggaaacctttaaggagagattctctcctgttctttcttattttctttattcaattgttctttctgttccattcaattcttaggtcccta 40182694  T
Q  252 aca 254  Q
    |||    
T  40182693 aca 40182691  T

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Target: chr8; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 152 - 254
Target Start/End: Complemental strand, 38341934 - 38341831
Alignment:
Q  152 atattgtaaaggggaa-cccttggaggagagattctctcatattcattcttattttcatattcaa-gtgttctttctattccactcaattcttgggttcc 249  Q
    |||||||||||||||| ||||||||||||||||| ||||  |||| ||| ||||| | || | || ||||||||||||||||| |||||| ||||||||     
T  38341934 atattgtaaaggggaaacccttggaggagagattatctcccattctttcctattt-cttagtaaaagtgttctttctattccattcaattgttgggttct 38341836  T
Q  250 taaca 254  Q
    |||||    
T  38341835 taaca 38341831  T

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Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 154 - 252
Target Start/End: Complemental strand, 19607304 - 19607204
Alignment:
Q  154 attgtaaaggggaa-cccttggaggagagattctctcatattcattcttattttcat-attcaagtgttctttctattccactcaattcttgggttccta 251  Q
    ||||| |||||||| |||||||||||||||||||||| || || ||||||||||| | ||| || |||||||| |||||||  |||||  ||||||||||    
T  19607304 attgtgaaggggaaacccttggaggagagattctctcctactctttcttattttcttaattaaattgttctttatattccatccaattactgggttccta 19607205  T
Q  252 a 252  Q
    |    
T  19607204 a 19607204  T

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Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 153 - 254
Target Start/End: Original strand, 37549926 - 37550028
Alignment:
Q  153 tattgtaaaggggaacc-cttggaggagagattctctcatattcattcttattttcatattcaagtgttctttctattccactcaattcttgggttccta 251  Q
    |||||| |||||||| | ||||||||||||||| |||| |||||  || |||||    | | ||||||||||||||||||| || |||||||||||||||    
T  37549926 tattgtgaaggggaaactcttggaggagagattatctcctattctatcatatttcttaaataaagtgttctttctattccattccattcttgggttccta 37550025  T
Q  252 aca 254  Q
    |||    
T  37550026 aca 37550028  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 159 - 195
Target Start/End: Original strand, 48507457 - 48507493
Alignment:
Q  159 aaaggggaacccttggaggagagattctctcatattc 195  Q
    |||||| |||||||||||||||||||||||| |||||    
T  48507457 aaagggaaacccttggaggagagattctctcctattc 48507493  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 214 - 255
Target Start/End: Original strand, 29465757 - 29465798
Alignment:
Q  214 aagtgttctttctattccactcaattcttgggttcctaacag 255  Q
    ||||||||||||||||||| ||||||||||| ||||||||||    
T  29465757 aagtgttctttctattccattcaattcttggattcctaacag 29465798  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 170 - 254
Target Start/End: Complemental strand, 41873642 - 41873557
Alignment:
Q  170 cttggaggagagattctctcatattcattcttattttcatattcaagtg-ttctttctattccactcaattcttgggttcctaaca 254  Q
    ||||||||||||||| |||| |  || ||||||||||| || |  |||| |||||||||||||| |||  ||||||||||||||||    
T  41873642 cttggaggagagattatctcctggtctttcttattttcttaatttagtggttctttctattccattcagctcttgggttcctaaca 41873557  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 254
Target Start/End: Complemental strand, 43038488 - 43038447
Alignment:
Q  213 caagtgttctttctattccactcaattcttgggttcctaaca 254  Q
    ||||||| ||||||||||||||| |||| |||||||||||||    
T  43038488 caagtgtcctttctattccactccattcatgggttcctaaca 43038447  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 160 - 207
Target Start/End: Complemental strand, 29765856 - 29765808
Alignment:
Q  160 aaggggaacccttggaggagag-attctctcatattcattcttattttc 207  Q
    ||||||||||||||||||||||  ||||||| ||||| |||||||||||    
T  29765856 aaggggaacccttggaggagagttttctctcctattctttcttattttc 29765808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 162 - 194
Target Start/End: Complemental strand, 51468634 - 51468602
Alignment:
Q  162 ggggaacccttggaggagagattctctcatatt 194  Q
    ||||||| |||||||||||||||||||||||||    
T  51468634 ggggaacacttggaggagagattctctcatatt 51468602  T

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