View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0197_low_6 (Length: 443)

Name: NF0197_low_6
Description: NF0197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0197_low_6
NF0197_low_6
[»] chr3 (15 HSPs)
chr3 (14-415)||(5155171-5155572)
chr3 (98-398)||(46490019-46490319)
chr3 (139-353)||(47398186-47398400)
chr3 (30-411)||(4582312-4582693)
chr3 (15-413)||(46478194-46478592)
chr3 (167-397)||(51942145-51942377)
chr3 (29-225)||(46469608-46469804)
chr3 (109-396)||(45900894-45901181)
chr3 (98-212)||(46497336-46497450)
chr3 (122-410)||(46550094-46550382)
chr3 (144-409)||(47414774-47415039)
chr3 (305-413)||(46469884-46469992)
chr3 (37-199)||(16023873-16024035)
chr3 (103-198)||(46507147-46507245)
chr3 (297-352)||(46543300-46543355)
[»] chr8 (3 HSPs)
chr8 (68-416)||(9677445-9677793)
chr8 (66-415)||(9693187-9693536)
chr8 (142-345)||(21465819-21466022)
[»] chr2 (5 HSPs)
chr2 (9-198)||(20154322-20154511)
chr2 (14-199)||(20143422-20143607)
chr2 (303-353)||(20143702-20143752)
chr2 (303-353)||(20169758-20169808)
chr2 (15-199)||(20169903-20170087)
[»] chr4 (8 HSPs)
chr4 (72-225)||(35160480-35160633)
chr4 (98-199)||(15555057-15555158)
chr4 (103-211)||(37147405-37147513)
chr4 (67-200)||(35154084-35154217)
chr4 (320-396)||(35154337-35154413)
chr4 (320-410)||(35160728-35160818)
chr4 (303-345)||(15555262-15555304)
chr4 (303-359)||(37147604-37147660)
[»] chr7 (4 HSPs)
chr7 (152-348)||(17734557-17734753)
chr7 (148-212)||(17743793-17743857)
chr7 (234-348)||(16720655-16720769)
chr7 (234-348)||(17697669-17697783)
[»] chr6 (1 HSPs)
chr6 (98-225)||(16967864-16967991)


Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 15)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 14 - 415
Target Start/End: Original strand, 5155171 - 5155572
Alignment:
Q  14 gaacaatggctctctgtgaatcaattaccaaccaaactaatgtttccctacgcatcgccaaacatctgttcttgaaagaattacacaagaacattgtgtt 113  Q
    ||||||||||||||  ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5155171 gaacaatggctctccatgaatcaatcaccaaccaaacaaatgtttccctacgcatcgccaaacatctgttcttgaaagaattagacaagaacattgtgtt 5155270  T
Q  114 ttcgccactgtctcttcaagttgtactaagcatcatcgctgctggctctgagggtcccacacaacaccagcttctcgacttcctccagtctaaatccact 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||| |||||||||    
T  5155271 ttcgccactgtctcttcaagttgtactaagcatcatcgctgctggctctgagggtcccacacaacaacagcttctcgacttcctcctgtccaaatccact 5155370  T
Q  214 gaccatctcaacgatcttgcctctcaacttgtttctgtcgtgctctccgatgctgctcccacaggtggacctcgactctcctatgtcagtggtgtatggg 313  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||| ||||||  |||| |||||||||||    
T  5155371 gaccatctcaacgatcttgcctctcaacttgtttctgtcgtgctcttcgacgctgctcccacaggtggacctcgattctccttcgtcaatggtgtatggg 5155470  T
Q  314 ttgaacaaaccctttctcttcaaccttccttcaaagaaatcgtgtcctccgattataaggccactttgctttctgttgatttcaaaaccaaggtatgttt 413  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5155471 ttgaacaaaccctttctcttcaaccttccttcaaagaaatcgtgtcctctgattataaggccactttgctttctgttgatttcaaaaccaaggtatgttt 5155570  T
Q  414 gt 415  Q
    ||    
T  5155571 gt 5155572  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 98 - 398
Target Start/End: Original strand, 46490019 - 46490319
Alignment:
Q  98 acaagaacattgtgttttcgccactgtctcttcaagttgtactaagcatcatcgctgctggctctgagggtcccacacaacaccagcttctcgacttcct 197  Q
    |||||||||||||||| |||||||| || || ||||||||||| ||||||||||||||||||||||| ||  |||||||||| |||||||| ||||||||    
T  46490019 acaagaacattgtgttatcgccactttcgctccaagttgtactcagcatcatcgctgctggctctgacggctccacacaacaacagcttcttgacttcct 46490118  T
Q  198 ccagtctaaatccactgaccatctcaacgatcttgcctctcaacttgtttctgtcgtgctctccgatgctgctcccacaggtggacctcgactctcctat 297  Q
    ||| ||||| ||||| || || ||||||    | |||||| | || ||||| ||| | |||   || | ||||||| | || |||||||| ||||| | |    
T  46490119 ccaatctaactccaccgatcaactcaactcattcgcctctaagctcgtttccgtcattctcaaagacggtgctcccgctggcggacctcgtctctctttt 46490218  T
Q  298 gtcagtggtgtatgggttgaacaaaccctttctcttcaaccttccttcaaagaaatcgtgtcctccgattataaggccactttgctttctgttgatttca 397  Q
    |||   ||||| ||||| ||| ||||||||||||||||||||||||||||| |||| |||||    |||||||| || | ||||  ||||||||||||||    
T  46490219 gtcgacggtgtgtgggtggaaaaaaccctttctcttcaaccttccttcaaacaaattgtgtctaatgattataaagcaaatttgtcttctgttgatttca 46490318  T
Q  398 a 398  Q
    |    
T  46490319 a 46490319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 139 - 353
Target Start/End: Complemental strand, 47398400 - 47398186
Alignment:
Q  139 ctaagcatcatcgctgctggctctgagggtcccacacaacaccagcttctcgacttcctccagtctaaatccactgaccatctcaacgatcttgcctctc 238  Q
    |||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||   ||| || |||||||| |||||||||    | |||||||    
T  47398400 ctaagcatcaacgctgctggctctgagggtcccacacaacaagagcttctcgacttccttgggtccaagtccactgaacatctcaactccttcgcctctc 47398301  T
Q  239 aacttgtttctgtcgtgctctccgatgctgctcccacaggtggacctcgactctcctatgtcagtggtgtatgggttgaacaaaccctttctcttcaacc 338  Q
    | ||  |||| ||||| |||   |||||| ||||||| | ||||||||| ||||| |  |||| ||| || |||||||||||||||||||||||||||||    
T  47398300 atctcctttcagtcgtactcaaggatgcttctcccaccgatggacctcgcctctctttcgtcaatggcgtgtgggttgaacaaaccctttctcttcaacc 47398201  T
Q  339 ttccttcaaagaaat 353  Q
    |||||||||| ||||    
T  47398200 ttccttcaaacaaat 47398186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 78; E-Value: 4e-36
Query Start/End: Original strand, 30 - 411
Target Start/End: Complemental strand, 4582693 - 4582312
Alignment:
Q  30 tgaatcaattaccaaccaaactaatgtttccctacgcatcgccaaacatctgttcttgaaagaattacacaagaacattgtgttttcgccactgtctctt 129  Q
    ||||||||| || |||||||| || ||||||||  | ||||||||| |||| ||||  ||||||| | | ||||||||||||||||| ||||| || ||     
T  4582693 tgaatcaatcactaaccaaacaaaagtttccctcagaatcgccaaatatctcttctcaaaagaatcagagaagaacattgtgttttccccactttcgctc 4582594  T
Q  130 caagttgtactaagcatcatcgctgctggctctgagggtcccacacaacaccagcttctcgacttcctccagtctaaatccactgaccatctcaacgatc 229  Q
    |||||||  || ||||| ||||||||||||||||| || ||||||  | | ||||||||||||||||| |  || ||||| ||||| |||||||||        
T  4582593 caagttgcgctcagcatgatcgctgctggctctgacggacccacaagagaacagcttctcgacttccttctctccaaatcaactgatcatctcaactcct 4582494  T
Q  230 ttgcctctcaacttgtttctgtcgtgctctccgatgctgctcccacaggtggacctcgactctcctatgtcagtggtgtatgggttgaacaaaccctttc 329  Q
    |||| ||||| || ||||||| | |  ||||| ||||||||||| | ||||| ||| | ||||| |   | | ||| || |||||||| |||| || |||    
T  4582493 ttgcttctcatctcgtttctgccatcatctccaatgctgctccctccggtggtccttgcctctctttccttaatggagtgtgggttgatcaaagccgttc 4582394  T
Q  330 tcttcaaccttccttcaaagaaatcgtgtcctccgattataaggccactttgctttctgttgatttcaaaaccaaggtatgt 411  Q
    ||| |||||||||||| || |||| || ||    |||||||||||||| |||  ||||||||||||||| | ||||||||||    
T  4582393 tctgcaaccttccttccaacaaatagtatctaatgattataaggccaccttgtcttctgttgatttcaagaacaaggtatgt 4582312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 15 - 413
Target Start/End: Original strand, 46478194 - 46478592
Alignment:
Q  15 aacaatggctctctgtgaatcaattaccaaccaaactaatgtttccctacgcatcgccaaacatctgttcttgaaagaattacacaagaacattgtgttt 114  Q
    |||||||| |||  ||||||||||  |||||||||| || || || ||  || | || |||||||| ||||  ||||||| | |||| ||||| ||||||    
T  46478194 aacaatggatcttcgtgaatcaatagccaaccaaaccaacgtatcactcagcgttgcaaaacatctcttctccaaagaatcagacaacaacatcgtgttt 46478293  T
Q  115 tcgccactgtctcttcaagttgtactaagcatcatcgctgctggctctgagggtcccacacaacaccagcttctcgacttcctccagtctaaatccactg 214  Q
    || ||||| || || |||||||| ||||| || |||||| |||| |||||||||||||| ||||| || ||| || ||||||| || || |||||||| |    
T  46478294 tctccactttcactccaagttgtgctaagtataatcgcttctggttctgagggtcccactcaacaacaacttttcaacttccttcaatccaaatccaccg 46478393  T
Q  215 accatctcaacgatcttgcctctcaacttgtttctgtcgtgctctccgatgctgctcccacaggtggacctcgactctcctatgtcagtggtgtatgggt 314  Q
    | ||||||||| |  | || || || || ||||| ||| | |||||||| ||| ||||| | ||||| ||||  ||||| |  |||   ||||| |||||    
T  46478394 atcatctcaactacttcgcttcacagctcgtttccgtcatcctctccgacgcttctcccgccggtggtcctctcctctctttcgtcgacggtgtttgggt 46478493  T
Q  315 tgaacaaaccctttctcttcaaccttccttcaaagaaatcgtgtcctccgattataaggccactttgctttctgttgatttcaaaaccaaggtatgttt 413  Q
    ||| ||||||||||||||||||||||||||| || ||||||||||| |  ||| ||| ||  |||||  ||| ||||||||| | | ||||||||||||    
T  46478494 tgatcaaaccctttctcttcaaccttccttccaacaaatcgtgtccactcattttaaagcagctttgtcttccgttgatttccagaacaaggtatgttt 46478592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 167 - 397
Target Start/End: Original strand, 51942145 - 51942377
Alignment:
Q  167 gtcccacacaacaccagcttctcgacttcctccagtctaaatccactgaccatctcaacgatcttgcctctcaacttgtttctgtc--gtgctctccgat 264  Q
    |||||||||  || || |||||||||||||| |  || ||||| ||||| ||||||||| | || ||||| || ||||||||| |   |||||||||||     
T  51942145 gtcccacaccgcagcaacttctcgacttcctacgatccaaatcaactgatcatctcaactacctcgcctcacagcttgtttctctattgtgctctccgac 51942244  T
Q  265 gctgctcccacaggtggacctcgactctcctatgtcagtggtgtatgggttgaacaaaccctttctcttcaaccttccttcaaagaaatcgtgtcctccg 364  Q
    |||||| |  | ||||||||||  |||||||  |||  |||||||||| | ||| ||||||||||||||||||||||||||||| ||||| |||| || |    
T  51942245 gctgcttctgccggtggacctcacctctccttcgtcgatggtgtatggatagaaaaaaccctttctcttcaaccttccttcaaacaaatcatgtcgtctg 51942344  T
Q  365 attataaggccactttgctttctgttgatttca 397  Q
    | |||||||||||||||  ||| ||||||||||    
T  51942345 actataaggccactttggcttccgttgatttca 51942377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 29 - 225
Target Start/End: Original strand, 46469608 - 46469804
Alignment:
Q  29 gtgaatcaattaccaaccaaactaatgtttccctacgcatcgccaaacatctgttcttgaaagaattacacaagaacattgtgttttcgccactgtctct 128  Q
    |||||||||| ||||||||||| || ||||||||   ||| ||||||||||| ||||  ||||||| | |||||||| ||||||||||||| ||||| ||    
T  46469608 gtgaatcaatcaccaaccaaaccaaagtttcccttaacatggccaaacatctcttctcaaaagaatcagacaagaacgttgtgttttcgccgctgtcact 46469707  T
Q  129 tcaagttgtactaagcatcatcgctgctggctctgagggtcccacacaacaccagcttctcgacttcctccagtctaaatccactgaccatctcaac 225  Q
     |||||| | || | |||  ||||||||| |||||||||||  |||||||| || |||||||| |||||||  || |||||||  ||||||||||||    
T  46469708 ccaagttatgctcaacattgtcgctgctgcctctgagggtcgtacacaacaacaacttctcgaattcctccgttccaaatccatcgaccatctcaac 46469804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 109 - 396
Target Start/End: Original strand, 45900894 - 45901181
Alignment:
Q  109 gtgttttcgccactgtctcttcaagttgtactaagcatcatcgctgctggctctgagggtcccacacaacaccagcttctcgacttcctccagtctaaat 208  Q
    |||||||| ||||| || || |||||| | || |||||||| ||||||||  |||||||||| |||||||| |||||| || |||||||||| | | |||    
T  45900894 gtgttttctccactctcgctccaagttattctcagcatcattgctgctggtgctgagggtccaacacaacagcagcttatccacttcctccaatttgaat 45900993  T
Q  209 ccactgaccatctcaacgatcttgcctctcaacttgtttctgtcgtgctctccgatgctgctcccacaggtggacctcgactctcctatgtcagtggtgt 308  Q
    |||| ||||||||||||  | |||||||||  || ||| ||||||| |||   || ||||||||  | || ||  || | |||||   || || ||||||    
T  45900994 ccaccgaccatctcaactcttttgcctctcggctcgttactgtcgtcctccaagacgctgctcctgctggcgggacttgcctctctgttgccaatggtgt 45901093  T
Q  309 atgggttgaacaaaccctttctcttcaaccttccttcaaagaaatcgtgtcctccgattataaggccactttgctttctgttgatttc 396  Q
     | |||||| ||||| ||||||||||||||||||||| || |||| |||||   ||||| ||| |||||| || ||| ||||||||||    
T  45901094 gttggttgatcaaacactttctcttcaaccttccttccaacaaattgtgtctaacgattttaaagccactctggtttatgttgatttc 45901181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 98 - 212
Target Start/End: Original strand, 46497336 - 46497450
Alignment:
Q  98 acaagaacattgtgttttcgccactgtctcttcaagttgtactaagcatcatcgctgctggctctgagggtcccacacaacaccagcttctcgacttcct 197  Q
    ||||||| || ||||| || ||||| || || |||||||| ||||||||||||||| ||||||| ||||| ||||||||||| || |||||| |||||||    
T  46497336 acaagaatatggtgttatctccactttcactacaagttgtgctaagcatcatcgctactggctccgagggccccacacaacaacaacttctcaacttcct 46497435  T
Q  198 ccagtctaaatccac 212  Q
    ||| || ||||||||    
T  46497436 ccaatccaaatccac 46497450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 122 - 410
Target Start/End: Complemental strand, 46550382 - 46550094
Alignment:
Q  122 tgtctcttcaagttgtactaagcatcatcgctgctggctctgagggtcccacacaacaccagcttctcgacttcctccagtctaaatccactgaccatct 221  Q
    |||| ||||||||||| || | |||||| ||||||||||| || ||||| ||| |||| || |||||    |||||||  || |||||||| || |||||    
T  46550382 tgtcccttcaagttgtgctcaacatcatagctgctggctccgacggtcctacaaaacaacaacttctgtctttcctccgatccaaatccacggatcatct 46550283  T
Q  222 caacgatcttgcctctcaacttgtttctgtcgtgctctccgatgctgctcccacaggtggacctcgactctcctatgtcagtggtgtatgggttgaacaa 321  Q
     ||     | ||||||||||||||||||   ||| |||| ||||||||||||   ||  | ||| | ||||| |  |||| |||||  ||| ||||||||    
T  46550282 taattccttagcctctcaacttgtttcttctgtgttctctgatgctgctccccttggcaggccttgcctctctttcgtcaatggtgcgtggattgaacaa 46550183  T
Q  322 accctttctcttcaaccttccttcaaagaaatcgtgtcctccgattataaggccactttgctttctgttgatttcaaaaccaaggtatg 410  Q
    |||||||||||||||||||||||  || |||   || |  | ||||||||||||||||||  ||| |||||||||||||| ||||||||    
T  46550182 accctttctcttcaaccttcctttgaaaaaactatggctactgattataaggccactttggcttcagttgatttcaaaactaaggtatg 46550094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 144 - 409
Target Start/End: Complemental strand, 47415039 - 47414774
Alignment:
Q  144 catcatcgctgctggctctgagggtcccacacaacaccagcttctcgacttcctccagtctaaatccactgaccatctcaacgatcttgcctctcaactt 243  Q
    |||||| || ||||||||||||||| ||||||| ||  |||||||||||||||||   || ||||||| ||| |||||||||    |||||||||| ||     
T  47415039 catcattgcggctggctctgagggtaccacacatcaaaagcttctcgacttcctcggctcaaaatccattgatcatctcaactcctttgcctctcatctc 47414940  T
Q  244 gtttctgtcgtgctctccgatgctgctcccacaggtggacctcgactctcctatgtcagtggtgtatgggttgaacaaaccctttctcttcaaccttcct 343  Q
     |||| | | | |||   ||| || ||||  |  |||| ||| |  |||| | ||||| |||  |||||||||||||| ||||||||||| |||||||||    
T  47414939 ctttcagccatactcaatgatccttctcctgccagtgggccttgcgtctcttttgtcaatggcctatgggttgaacaatccctttctcttaaaccttcct 47414840  T
Q  344 tcaaagaaatcgtgtcctccgattataaggccactttgctttctgttgatttcaaaaccaaggtat 409  Q
    ||||| ||||||| |   | |||||||||||| |||||  ||| || |||||||| | ||||||||    
T  47414839 tcaaacaaatcgtctatcctgattataaggccgctttgtcttccgtagatttcaagaacaaggtat 47414774  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 305 - 413
Target Start/End: Original strand, 46469884 - 46469992
Alignment:
Q  305 gtgtatgggttgaacaaaccctttctcttcaaccttccttcaaagaaatcgtgtcctccgattataaggccactttgctttctgttgatttcaaaaccaa 404  Q
    |||| |||||||| ||||||||||||||||||||||||||||||||||   ||    | |||||||| |||||||||  ||| ||||||||| | | |||    
T  46469884 gtgtgtgggttgatcaaaccctttctcttcaaccttccttcaaagaaacaatggttactgattataaagccactttggcttccgttgatttccagaacaa 46469983  T
Q  405 ggtatgttt 413  Q
    |||||||||    
T  46469984 ggtatgttt 46469992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 37 - 199
Target Start/End: Original strand, 16023873 - 16024035
Alignment:
Q  37 attaccaaccaaactaatgtttccctacgcatcgccaaacatctgttcttgaaagaattacacaagaacattgtgttttcgccactgtctcttcaagttg 136  Q
    |||||||||||||| || || |||||   ||||| ||||||||| || |  ||| ||| | |||| |||||  ||||||| || || || ||||||||||    
T  16023873 attaccaaccaaaccaacgtatccctcaacatcgtcaaacatctcttttcaaaacaatcagacaataacatcatgttttctccgctatcacttcaagttg 16023972  T
Q  137 tactaagcatcatcgctgctggctctgagggtcccacacaacaccagcttctcgacttcctcc 199  Q
    | || ||| | ||||||||||| || ||||| || |||||||| ||||||||| |||||||||    
T  16023973 ttctcagccttatcgctgctggatccgagggaccgacacaacaacagcttctccacttcctcc 16024035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 103 - 198
Target Start/End: Complemental strand, 46507245 - 46507147
Alignment:
Q  103 aacattgtgttttcgccactgtctcttcaagttgtactaagcatcat---cgctgctggctctgagggtcccacacaacaccagcttctcgacttcctc 198  Q
    |||||| ||||||| ||||| ||  |||||||| | || ||||||||   |||||| ||||||||||||||||| ||||| ||| |||| |||||||||    
T  46507245 aacattatgttttcaccactctcgattcaagttattctcagcatcataatcgctgccggctctgagggtcccactcaacaacagattcttgacttcctc 46507147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 297 - 352
Target Start/End: Original strand, 46543300 - 46543355
Alignment:
Q  297 tgtcagtggtgtatgggttgaacaaaccctttctcttcaaccttccttcaaagaaa 352  Q
    ||||| ||||||||||||||||||| | ||| || |||||| ||||||||||||||    
T  46543300 tgtcaatggtgtatgggttgaacaatcacttacttttcaacattccttcaaagaaa 46543355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 85; Significance: 2e-40; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 68 - 416
Target Start/End: Complemental strand, 9677793 - 9677445
Alignment:
Q  68 tcgccaaacatctgttcttgaaagaattacacaagaacattgtgttttcgccactgtctcttcaagttgtactaagcatcatcgctgctggctctgaggg 167  Q
    ||||||||||||| ||||  ||||||| | |||| ||| | || ||||| ||| ||||||| |||||||| || || |||||||||||||||||||||||    
T  9677793 tcgccaaacatctcttctcaaaagaatcagacaacaacgtcgtcttttcaccattgtctctccaagttgttctcagtatcatcgctgctggctctgaggg 9677694  T
Q  168 tcccacacaacaccagcttctcgacttcctccagtctaaatccactgaccatctcaacgatcttgcctctcaacttgtttctgtcgtgctctccgatgct 267  Q
    ||| || ||||| |||||||||||||||||||  |  |||||||  || |||||||||    | | |||||| ||  |||||||| | |||   |||||     
T  9677693 tcctactcaacaacagcttctcgacttcctccgtttcaaatccatcgatcatctcaactccttcgtctctcatctcctttctgtcctcctcaaagatgca 9677594  T
Q  268 gctcccacaggtggacctcgactctcctatgtcagtggtgtatgggttgaacaaaccctttctcttcaaccttccttcaaagaaatcgtgtcctccgatt 367  Q
    ||| |  | ||||| ||||| ||||| |  | || |||||||||||| ||  ||| |||||||||||||||||||||| |||||| | ||||  ||||||    
T  9677593 gcttcttccggtggtcctcgcctctctttcgccaatggtgtatgggtggagaaaaacctttctcttcaaccttccttccaagaaaccatgtctaccgatt 9677494  T
Q  368 ataaggccactttgctttctgttgatttcaaaaccaaggtatgtttgtg 416  Q
    ||||||||||| |   |||||||||||||| || |||||||||||||||    
T  9677493 ataaggccactctcgcttctgttgatttcataaacaaggtatgtttgtg 9677445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 66 - 415
Target Start/End: Complemental strand, 9693536 - 9693187
Alignment:
Q  66 catcgccaaacatctgttcttgaaagaattacacaagaacattgtgttttcgccactgtctcttcaagttgtactaagcatcatcgctgctggctctgag 165  Q
    ||||||||||||||| ||||  ||||||| | |||||||  | || ||||| ||| ||||||| |||||||| || ||||||||||||| |||||||||     
T  9693536 catcgccaaacatctcttctcaaaagaatcagacaagaatgtcgtcttttcaccattgtctctccaagttgttctcagcatcatcgctgttggctctgac 9693437  T
Q  166 ggtcccacacaacaccagcttctcgacttcctccagtctaaatccactgaccatctcaacgatcttgcctctcaacttgtttctgtcgtgctctccgatg 265  Q
    ||||| || ||||| |||||||| ||||||||||  |  |||||||  || |||||||||    ||| |||||| ||  ||| |||| | |||   || |    
T  9693436 ggtcctactcaacaacagcttcttgacttcctccgtttcaaatccatcgatcatctcaacttctttgtctctcatctcctttatgtcctcctcaaagacg 9693337  T
Q  266 ctgctcccacaggtggacctcgactctcctatgtcagtggtgtatgggttgaacaaaccctttctcttcaaccttccttcaaagaaatcgtgtcctccga 365  Q
    |  || |  | ||||| ||||  ||||| |  | || |||||| ||||| ||  ||||||||||||||||||||||||||||||||| | ||||  | ||    
T  9693336 caacttcttccggtggtcctcacctctctttcgccaatggtgtgtgggtagagaaaaccctttctcttcaaccttccttcaaagaaaccatgtctactga 9693237  T
Q  366 ttataaggccactttgctttctgttgatttcaaaaccaaggtatgtttgt 415  Q
    |||||||||  |||||  |||||||||||||   | ||||||||||||||    
T  9693236 ttataaggctgctttgtcttctgttgatttccggaacaaggtatgtttgt 9693187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 345
Target Start/End: Complemental strand, 21466022 - 21465819
Alignment:
Q  142 agcatcatcgctgctggctctgagggtcccacacaacaccagcttctcgacttcctccagtctaaatccactgaccatctcaacgatcttgcctctcaac 241  Q
    ||||||||||||||||||||||| ||||| |||||||| || ||||||   |||||||| || || ||||||||  |||| ||| |  |||||||||| |    
T  21466022 agcatcatcgctgctggctctgaaggtccgacacaacaacaacttctctcattcctccaatccaagtccactgaaaatctaaactactttgcctctcagc 21465923  T
Q  242 ttgtttctgtcgtgctctccgatgctgctcccacaggtggacctcgactctcctat-gtcagtggtgtatgggttgaacaaaccctttctcttcaacctt 340  Q
    |||||||    ||||||||   |||||||||| | || ||||||| |||   || | |||| |||| | |||||||||||| | ||||||||||||||||    
T  21465922 ttgtttcctctgtgctctctagtgctgctcccgctggcggacctc-acttggctttcgtcaatggtatgtgggttgaacaatcactttctcttcaacctt 21465824  T
Q  341 ccttc 345  Q
    |||||    
T  21465823 ccttc 21465819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 82; Significance: 1e-38; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 9 - 198
Target Start/End: Original strand, 20154322 - 20154511
Alignment:
Q  9 gagatgaacaatggctctctgtgaatcaattaccaaccaaactaatgtttccctacgcatcgccaaacatctgttcttgaaagaattacacaagaacatt 108  Q
    |||| ||||| ||||||||   |||||||| ||||||||||  || |||| |||   ||||||||||||||||||||||||| ||| | |||||||||||    
T  20154322 gagaagaacagtggctctccaagaatcaatcaccaaccaaataaaggttttcctcgacatcgccaaacatctgttcttgaaacaatcagacaagaacatt 20154421  T
Q  109 gtgttttcgccactgtctcttcaagttgtactaagcatcatcgctgctggctctgagggtcccacacaacaccagcttctcgacttcctc 198  Q
    |||||||||||| |||| || ||||||||  | ||| ||| ||||||||||||||| |||||||||||||| |||||| |||||||||||    
T  20154422 gtgttttcgccagtgtcactccaagttgtgttcagcctcaccgctgctggctctgaaggtcccacacaacaacagcttgtcgacttcctc 20154511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 14 - 199
Target Start/End: Original strand, 20143422 - 20143607
Alignment:
Q  14 gaacaatggctctctgtgaatcaattaccaaccaaactaatgtttccctacgcatcgccaaacatctgttcttgaaagaattacacaagaacattgtgtt 113  Q
    |||||||||||||    |||||||| || |||||||| || ||||||||   |||||||| ||||||||| |||||| ||| | |||||||||| |||||    
T  20143422 gaacaatggctcttcaagaatcaatcactaaccaaacaaaggtttccctcgacatcgccagacatctgttgttgaaacaatcagacaagaacatcgtgtt 20143521  T
Q  114 ttcgccactgtctcttcaagttgtactaagcatcatcgctgctggctctgagggtcccacacaacaccagcttctcgacttcctcc 199  Q
    ||||||||| || || ||| |||| || ||| | ||||||||||| ||||| | |||||||||||| || ||| ||||||||||||    
T  20143522 ttcgccactatcactccaaattgtgctcagccttatcgctgctggttctgaagatcccacacaacaacaacttgtcgacttcctcc 20143607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 303 - 353
Target Start/End: Original strand, 20143702 - 20143752
Alignment:
Q  303 tggtgtatgggttgaacaaaccctttctcttcaaccttccttcaaagaaat 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20143702 tggtgtatgggttgaacaaaccctttctcttcaaccttccttcaaacaaat 20143752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 303 - 353
Target Start/End: Complemental strand, 20169808 - 20169758
Alignment:
Q  303 tggtgtatgggttgaacaaaccctttctcttcaaccttccttcaaagaaat 353  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  20169808 tggtgtatgggttgaacaaaccctttctcttcaaccttccttcaaacaaat 20169758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 15 - 199
Target Start/End: Complemental strand, 20170087 - 20169903
Alignment:
Q  15 aacaatggctctctgtgaatcaattaccaaccaaactaatgtttccctacgcatcgccaaacatctgttcttgaaagaattacacaagaacattgtgttt 114  Q
    |||||||||||||   |||||||| || |||||||| || ||||||||   ||| |||| ||||||||| |||||| ||| | |||| ||| | ||||||    
T  20170087 aacaatggctctccaagaatcaatcactaaccaaacaaaggtttccctcgacatggccagacatctgttgttgaaacaatcagacaaaaacgtcgtgttt 20169988  T
Q  115 tcgccactgtctcttcaagttgtactaagcatcatcgctgctggctctgagggtcccacacaacaccagcttctcgacttcctcc 199  Q
    || ||||| || |||||| |||| || ||| | || ||| |||| ||||| ||||||||| |||| || ||| ||||||||||||    
T  20169987 tcaccactatcacttcaaattgtgctcagccttattgctactggttctgaaggtcccacaaaacaacaacttgtcgacttcctcc 20169903  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 66; Significance: 5e-29; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 72 - 225
Target Start/End: Original strand, 35160480 - 35160633
Alignment:
Q  72 caaacatctgttcttgaaagaattacacaagaacattgtgttttcgccactgtctcttcaagttgtactaagcatcatcgctgctggctctgagggtccc 171  Q
    ||||||||| ||||  ||||||| | | |||||||| |||||||||||| ||||||| |||||||| || ||||| ||| ||||||||||||||||| |     
T  35160480 caaacatctcttctccaaagaatcagaaaagaacatcgtgttttcgccattgtctctccaagttgtgctcagcataatcactgctggctctgagggttca 35160579  T
Q  172 acacaacaccagcttctcgacttcctccagtctaaatccactgaccatctcaac 225  Q
    |||||||| |||||||| ||||||||||  |  ||||||||||| |||||||||    
T  35160580 acacaacaacagcttcttgacttcctccgtttcaaatccactgatcatctcaac 35160633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 98 - 199
Target Start/End: Original strand, 15555057 - 15555158
Alignment:
Q  98 acaagaacattgtgttttcgccactgtctcttcaagttgtactaagcatcatcgctgctggctctgagggtcccacacaacaccagcttctcgacttcct 197  Q
    |||| |||||||||||||| || || ||  |||||||| | || ||||||||||||||||||||||||||| ||||||| || || ||||||||||||||    
T  15555057 acaacaacattgtgttttcacctctctcgattcaagttattctcagcatcatcgctgctggctctgagggttccacacagcaacaacttctcgacttcct 15555156  T
Q  198 cc 199  Q
    ||    
T  15555157 cc 15555158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 103 - 211
Target Start/End: Original strand, 37147405 - 37147513
Alignment:
Q  103 aacattgtgttttcgccactgtctcttcaagttgtactaagcatcatcgctgctggctctgagggtcccacacaacaccagcttctcgacttcctccagt 202  Q
    |||||||||||||||||  |||| || |||||||| ||||| || ||||||||||||||  |||||||||||||||| ||  |||||||||||||| | |    
T  37147405 aacattgtgttttcgcccttgtcgctccaagttgttctaagtattatcgctgctggctccaagggtcccacacaacaacaaattctcgacttcctcgact 37147504  T
Q  203 ctaaatcca 211  Q
     ||||||||    
T  37147505 ttaaatcca 37147513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 67 - 200
Target Start/End: Original strand, 35154084 - 35154217
Alignment:
Q  67 atcgccaaacatctgttcttgaaagaattacacaagaacattgtgttttcgccactgtctcttcaagttgtactaagcatcatcgctgctggctctgagg 166  Q
    |||||||||||||| ||||  || |||| | | ||||| || |||||||||||  ||||||| ||||| || ||    |||||||||||||||||||| |    
T  35154084 atcgccaaacatcttttctcaaaggaatcagaaaagaatatcgtgttttcgcctttgtctctccaagtagtgcttgcaatcatcgctgctggctctgacg 35154183  T
Q  167 gtcccacacaacaccagcttctcgacttcctcca 200  Q
    || |||||| ||| ||||||||| ||||||||||    
T  35154184 gttccacacgacaacagcttctcaacttcctcca 35154217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 320 - 396
Target Start/End: Original strand, 35154337 - 35154413
Alignment:
Q  320 aaaccctttctcttcaaccttccttcaaagaaatcgtgtcctccgattataaggccactttgctttctgttgatttc 396  Q
    |||||||||||| |||||||||||||||| | |||||| |  ||||||| ||||||||||||  |||||||||||||    
T  35154337 aaaccctttctcctcaaccttccttcaaacatatcgtgactaccgattacaaggccactttgtcttctgttgatttc 35154413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 320 - 410
Target Start/End: Original strand, 35160728 - 35160818
Alignment:
Q  320 aaaccctttctcttcaaccttccttcaaagaaatcgtgtcctccgattataaggccactttgctttctgttgatttcaaaaccaaggtatg 410  Q
    ||||||||||||||||| ||||||||||| ||||||||||    ||||||||||||||||||  |   ||||||||||| | |||||||||    
T  35160728 aaaccctttctcttcaatcttccttcaaacaaatcgtgtctgaagattataaggccactttgtctgaagttgatttcaagaacaaggtatg 35160818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 303 - 345
Target Start/End: Original strand, 15555262 - 15555304
Alignment:
Q  303 tggtgtatgggttgaacaaaccctttctcttcaaccttccttc 345  Q
    |||||| |||||||| |||||||||||||||||| ||||||||    
T  15555262 tggtgtgtgggttgagcaaaccctttctcttcaaacttccttc 15555304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 303 - 359
Target Start/End: Original strand, 37147604 - 37147660
Alignment:
Q  303 tggtgtatgggttgaacaaaccctttctcttcaaccttccttcaaagaaatcgtgtc 359  Q
    |||||| ||| |||||||| | ||||||||||||| |||||||||| |||| |||||    
T  37147604 tggtgtgtggattgaacaatcactttctcttcaacattccttcaaacaaattgtgtc 37147660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 152 - 348
Target Start/End: Original strand, 17734557 - 17734753
Alignment:
Q  152 ctgctggctctgagggtcccacacaacaccagcttctcgacttcctccagtctaaatccactgaccatctcaacgatcttgcctctcaacttgtttctgt 251  Q
    |||| ||||| ||||||||||||||| |||| ||||||  ||||||||||||| ||||||| |   |||||||     |   |||||| |||||||||      
T  17734557 ctgccggctccgagggtcccacacaaaaccaacttctctccttcctccagtctgaatccaccggtgatctcaaatccttatgctctcagcttgtttcttc 17734656  T
Q  252 cgtgctctccgatgctgctcccacaggtggacctcgactctcctatgtcagtggtgtatgggttgaacaaaccctttctcttcaaccttccttcaaa 348  Q
     |||||||||||||  |||||| | ||||| ||| | || ||  | |||| |||||| |||||||||||| | ||| ||||||||||||||||||||    
T  17734657 tgtgctctccgatggcgctcccgccggtggtccttgcctgtctcacgtcaatggtgtgtgggttgaacaatcacttcctcttcaaccttccttcaaa 17734753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 148 - 212
Target Start/End: Original strand, 17743793 - 17743857
Alignment:
Q  148 atcgctgctggctctgagggtcccacacaacaccagcttctcgacttcctccagtctaaatccac 212  Q
    |||||| | ||||| ||||||||||||||| |||| ||||||  ||||||||||||| |||||||    
T  17743793 atcgctaccggctccgagggtcccacacaaaaccaacttctctccttcctccagtctgaatccac 17743857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 348
Target Start/End: Original strand, 16720655 - 16720769
Alignment:
Q  234 ctctcaacttgtttctgtcgtgctctccgatgctgctcccacaggtggacctcgactctcctatgtcagtggtgtatgggttgaacaaaccctttctctt 333  Q
    |||||| |||||||||   |||||||||||||  |||||| | ||||| ||| |  | || || |||| |||||| ||||||||||| ||  || |||||    
T  16720655 ctctcagcttgtttcttctgtgctctccgatggcgctcccgctggtggcccttgcttgtcttacgtcaatggtgtgtgggttgaacagacaattcctctt 16720754  T
Q  334 caaccttccttcaaa 348  Q
    |||||||||||||||    
T  16720755 caaccttccttcaaa 16720769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 234 - 348
Target Start/End: Original strand, 17697669 - 17697783
Alignment:
Q  234 ctctcaacttgtttctgtcgtgctctccgatgctgctcccacaggtggacctcgactctcctatgtcagtggtgtatgggttgaacaaaccctttctctt 333  Q
    |||||| |||||||||   |||||||||||||  |||||| | ||||| ||| |  | || || |||| |||||| ||||||||||| ||  || |||||    
T  17697669 ctctcagcttgtttcttctgtgctctccgatggcgctcccgctggtggcccttgcttgtcttacgtcaatggtgtgtgggttgaacagacaattcctctt 17697768  T
Q  334 caaccttccttcaaa 348  Q
    |||||||||||||||    
T  17697769 caaccttccttcaaa 17697783  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 98 - 225
Target Start/End: Complemental strand, 16967991 - 16967864
Alignment:
Q  98 acaagaacattgtgttttcgccactgtctcttcaagttgtactaagcatcatcgctgctggctctgagggtcccacacaacaccagcttctcgacttcct 197  Q
    |||| ||||| |||||||| ||||| || || ||||||||  ||||||| ||||||  ||| |||||||||||||| ||||| || ||| || | |||||    
T  16967991 acaacaacatcgtgttttcaccactctcactccaagttgtgttaagcataatcgcttttggttctgagggtcccactcaacaacaacttttcaaattcct 16967892  T
Q  198 ccagtctaaatccactgaccatctcaac 225  Q
    ||| || |||||||  || |||||||||    
T  16967891 ccaatccaaatccatcgatcatctcaac 16967864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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