View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0197_low_7 (Length: 390)
Name: NF0197_low_7
Description: NF0197
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0197_low_7 |
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| [»] scaffold0896 (2 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 308; Significance: 1e-173; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 4149793 - 4149434
Alignment:
| Q |
1 |
gcggtgaagatggagagtgtgcagtgcggttttgttatcacgtagatacaaaaattgagacacgaatctgatgaaacccttccgagtctcgaagtggcaa |
100 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||| |||||||||||||||||||| |
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| T |
4149793 |
gcggtgaagatcgagagtgtgcagtgcggttttgttatcacgtagatacaaaaattgatacacgaatatggtgaaacccatccgagtctcgaagtggcaa |
4149694 |
T |
|
| Q |
101 |
caacttattgaaagaacaggaatatacttccagagattcttccatctcgcggacagaacacaggtttgaacggcctctttggtgttcaaaaccgacagta |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
4149693 |
gaacttattgaaagaacaggaatatacttccagagattcttccatctcgtggacaaaacgcaggtttgaacggcctctttggtgttcaaaatcgacagta |
4149594 |
T |
|
| Q |
201 |
tgagaagtaacacacaattcggtaaatctctgattctgtctttattttcgtcgatattatgtgttttcattgtttcagaagctagaaacaattgtgctgc |
300 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4149593 |
tgagaagtaacacacaattcggtaaatcactgattctgtcttcattttcatcgatattatgtgttttcattgtttcagaagctagaaacaattgtgctgc |
4149494 |
T |
|
| Q |
301 |
ggcaaagttttgatacccgagagtgggcaaaaccctactgctccgttgttgtagtagtta |
360 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4149493 |
ggcaaagttttgatacccgagagtgggcaaaaccctactgctccgttgttgtagtagtta |
4149434 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 301; E-Value: 1e-169
Query Start/End: Original strand, 1 - 360
Target Start/End: Complemental strand, 4165565 - 4165205
Alignment:
| Q |
1 |
gcggtgaagatggagagtgtgcagtgcggttttgttatcacgtagatacaaaaattgagacacgaatctgatgaaacccttccgagtctcgaagtggcaa |
100 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||| || |||||||| |||||||||||||||||||| |
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| T |
4165565 |
gcggtgaagatcgagagtgtgcagtgcggttttgttatcacgtagatacaaaaattgatacacgaatatggtgaaacccatccgagtctcgaagtggcaa |
4165466 |
T |
|
| Q |
101 |
caacttattgaaagaacaggaatatacttccagagattcttccatctcgcggacagaacacaggtttgaacggcctctttggtgttcaaaaccgacagta |
200 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||| ||||||||||||||||||||||||||||||| |||||||| |
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| T |
4165465 |
gaacttattgaaagaacaggaatatacttccagagattcttccatctcgtggacaaaacgcaggtttgaacggcctctttggtgttcaaaatcgacagta |
4165366 |
T |
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| Q |
201 |
tgagaagtaacacacaattcggtaaatctctgattctgtctttattttcgtcgatattatgtgttttcatt-gtttcagaagctagaaacaattgtgctg |
299 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||| |||||| ||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
4165365 |
tgagaagtaacacacaattcggtaaatcactgattctgtcttcattttcatcgatattatgtgttttcattggtttcagaagctagaaacaattgtgctg |
4165266 |
T |
|
| Q |
300 |
cggcaaagttttgatacccgagagtgggcaaaaccctactgctccgttgttgtagtagtta |
360 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4165265 |
cggcaaagttttgatacccgagagtgggcaaaaccctactgctccgttgttgtagtagtta |
4165205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 309 - 360
Target Start/End: Complemental strand, 4148805 - 4148754
Alignment:
| Q |
309 |
tttgatacccgagagtgggcaaaaccctactgctccgttgttgtagtagtta |
360 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4148805 |
tttgatacccgagagtgggcaaaaccctactgctccgttgttgtagtagtta |
4148754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 127 - 249
Target Start/End: Complemental strand, 32413704 - 32413582
Alignment:
| Q |
127 |
cttccagagattcttccatctcgcggacagaacacaggtttgaacggcctctttggtgttcaaaaccgacagtatgagaagtaacacacaattcggtaaa |
226 |
Q |
| |
|
||||||||||||||||||||| | ||||| || || ||||||||||| | ||||||||||||| || |||||| ||||||| ||||||| | |||| |
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| T |
32413704 |
cttccagagattcttccatcttgtggacaaaatgcaagtttgaacggcgtgtttggtgttcaaagaggagagtatgtgaagtaaaacacaatcagataaa |
32413605 |
T |
|
| Q |
227 |
tctctgattctgtctttattttc |
249 |
Q |
| |
|
|| |||| |||||||| |||||| |
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| T |
32413604 |
tcactgagtctgtcttgattttc |
32413582 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 228
Target Start/End: Original strand, 7115543 - 7115645
Alignment:
| Q |
126 |
acttccagagattcttccatctcgcggacagaacacaggtttgaacggcctctttggtgttcaaaaccgacagtatgagaagtaacacacaattcggtaa |
225 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||| |||||||| || | |||||||||||||| || |||||| ||||||| ||||||| ||||| |
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| T |
7115543 |
acttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaa |
7115642 |
T |
|
| Q |
226 |
atc |
228 |
Q |
| |
|
||| |
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| T |
7115643 |
atc |
7115645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 228
Target Start/End: Original strand, 7120615 - 7120717
Alignment:
| Q |
126 |
acttccagagattcttccatctcgcggacagaacacaggtttgaacggcctctttggtgttcaaaaccgacagtatgagaagtaacacacaattcggtaa |
225 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||| |||||||| || | |||||||||||||| || |||||| ||||||| ||||||| ||||| |
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| T |
7120615 |
acttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaa |
7120714 |
T |
|
| Q |
226 |
atc |
228 |
Q |
| |
|
||| |
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|
| T |
7120715 |
atc |
7120717 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 126 - 228
Target Start/End: Original strand, 7124019 - 7124121
Alignment:
| Q |
126 |
acttccagagattcttccatctcgcggacagaacacaggtttgaacggcctctttggtgttcaaaaccgacagtatgagaagtaacacacaattcggtaa |
225 |
Q |
| |
|
|||||||||||||||||||||| ||||| |||||| |||||||| || | |||||||||||||| || |||||| ||||||| ||||||| ||||| |
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| T |
7124019 |
acttccagagattcttccatcttttggacaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaatcaggtaa |
7124118 |
T |
|
| Q |
226 |
atc |
228 |
Q |
| |
|
||| |
|
|
| T |
7124119 |
atc |
7124121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 127 - 218
Target Start/End: Original strand, 8656649 - 8656740
Alignment:
| Q |
127 |
cttccagagattcttccatctcgcggacagaacacaggtttgaacggcctctttggtgttcaaaaccgacagtatgagaagtaacacacaat |
218 |
Q |
| |
|
||||||||||||||||||||| || || |||||| |||||||| || | |||||||||||||| || |||||| ||||||| ||||||| |
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| T |
8656649 |
cttccagagattcttccatcttttggccaaaacacaagtttgaactgcgtatttggtgttcaaaaaagagagtatgtgaagtaaaacacaat |
8656740 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 19658349 - 19658395
Alignment:
| Q |
128 |
ttccagagattcttccatctcgcggacagaacacaggtttgaacggc |
174 |
Q |
| |
|
|||||||||||| ||||||||| ||||| |||||| ||||||||||| |
|
|
| T |
19658349 |
ttccagagattcctccatctcgtggacaaaacacaagtttgaacggc |
19658395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 128 - 174
Target Start/End: Original strand, 19675188 - 19675234
Alignment:
| Q |
128 |
ttccagagattcttccatctcgcggacagaacacaggtttgaacggc |
174 |
Q |
| |
|
|||||||||||| ||||||||| ||||| |||||| ||||||||||| |
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|
| T |
19675188 |
ttccagagattcctccatctcgtggacaaaacacaagtttgaacggc |
19675234 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0896 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: scaffold0896
Description:
Target: scaffold0896; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 126 - 191
Target Start/End: Complemental strand, 2321 - 2256
Alignment:
| Q |
126 |
acttccagagattcttccatctcgcggacagaacacaggtttgaacggcctctttggtgttcaaaa |
191 |
Q |
| |
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|||||||||||||||||||||| || || |||||| |||||||| || | |||||||||||||| |
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|
| T |
2321 |
acttccagagattcttccatcttttggccaaaacacaagtttgaactgcgtatttggtgttcaaaa |
2256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0896; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 127 - 191
Target Start/End: Complemental strand, 1537 - 1473
Alignment:
| Q |
127 |
cttccagagattcttccatctcgcggacagaacacaggtttgaacggcctctttggtgttcaaaa |
191 |
Q |
| |
|
||||||||||||||||||||| || || |||||| |||||||| || | |||||||||||||| |
|
|
| T |
1537 |
cttccagagattcttccatcttttggccaaaacacaagtttgaactgcgtatttggtgttcaaaa |
1473 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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