View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0198_low_1 (Length: 428)
Name: NF0198_low_1
Description: NF0198
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0198_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 369; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 369; E-Value: 0
Query Start/End: Original strand, 12 - 407
Target Start/End: Complemental strand, 46721901 - 46721503
Alignment:
| Q |
12 |
agagatgttcaattatgatatttgaggtacagaaagaactatgtcgttatgctaattaactttgattgttggttacttaaaagatttttaccactgaagc |
111 |
Q |
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| T |
46721901 |
agagatgttcaattatgatatttgaggtacagaaagaactatgtcgttatgctaattaactttgattgttggttacttaaaagatttttaccactgaagc |
46721802 |
T |
|
| Q |
112 |
caagaaatcttgctcgtgagcctcctgatatttttccatatcctattcggccattcgcctactcctggtggatccgaatcatttatttgtgtttatatat |
211 |
Q |
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|||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46721801 |
caagaaatcttgctcgtgagcctcctgatattcttccatttcctattcggccattcgcctactcctggtggatccgaatcatttatttgtgtttatatat |
46721702 |
T |
|
| Q |
212 |
cacataaaatgacattttatttagtgatattgataaaattttctgtttgctgtttcataggaggatgtcgcagttgagatagctgaaaaaatttctcagt |
311 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46721701 |
cacataaaatgacattttatttagtgatattgataaaattttctgtttgctgtttcttaggaggatgtcgcagttgagatagctgaaaaaatttctcagt |
46721602 |
T |
|
| Q |
312 |
ttgtctcgtcgttaccaaaaactgtcagaaaagttgagcaagagccccctatcccagaccacgtac---agatgtttgatgaagcgaaaagtgatgatg |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||| |
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| T |
46721601 |
ttgtctcgtcgttaccaaaaactgtcagaaaagttgagcaagagccccctatcccagaccacgtacagaagatgtttgatgaagcaaaaagtgatgatg |
46721503 |
T |
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