View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0199-INSERTION-2 (Length: 558)
Name: NF0199-INSERTION-2
Description: NF0199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0199-INSERTION-2 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 317; Significance: 1e-178; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 317; E-Value: 1e-178
Query Start/End: Original strand, 1 - 365
Target Start/End: Original strand, 1394565 - 1394929
Alignment:
| Q |
1 |
cgagactgaggtctagttttaatttattttcaatgcctcttcaacgaacatatatatagttttgaacttagatggttaatcggtttgtcatggttaatct |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||| |||||||||||||||||| |||||| ||||||||||||||||||||||||||||| |
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|
| T |
1394565 |
cgagaccgaggtctagttttaatttattttcaatgccttttcaatgaacatatatatagttttaaacttaaatggttaatcggtttgtcatggttaatct |
1394664 |
T |
|
| Q |
101 |
acttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatactacgacggacgttactggacaatgtggaagttgcctttgtttggagcaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1394665 |
acttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagcaac |
1394764 |
T |
|
| Q |
201 |
tgatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcgagttcaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| |
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|
| T |
1394765 |
tgatgcttctcaagtgttgaaggagcttgatgaagttgttgatgcttaccctaatgcctttgtccgtatcatcggattcgacaaagttcgtcaagttcaa |
1394864 |
T |
|
| Q |
301 |
tgcatcagtttcattgcacacacacctgaagttcactaagttcattgcattggaatttggaagaa |
365 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||||||||||| ||||||||||||||| |
|
|
| T |
1394865 |
tgcatcagtttcattgcacacacacctgatgtttactaagttcattgcactggaatttggaagaa |
1394929 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 311; E-Value: 1e-175
Query Start/End: Original strand, 1 - 339
Target Start/End: Original strand, 1390319 - 1390657
Alignment:
| Q |
1 |
cgagactgaggtctagttttaatttattttcaatgcctcttcaacgaacatatatatagttttgaacttagatggttaatcggtttgtcatggttaatct |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1390319 |
cgagaccgaggtctagttttaatttattttcaatgccttttcaacgaacatatatatagttttgaacttagatggttaatcggtttgtcatggttaatct |
1390418 |
T |
|
| Q |
101 |
acttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatactacgacggacgttactggacaatgtggaagttgcctttgtttggagcaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1390419 |
acttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagcaac |
1390518 |
T |
|
| Q |
201 |
tgatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcgagttcaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1390519 |
tgatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaa |
1390618 |
T |
|
| Q |
301 |
tgcatcagtttcattgcacacacacctgaagttcactaa |
339 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||| |
|
|
| T |
1390619 |
tgcatcagtttcattgcacacacacctgatgtttactaa |
1390657 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 342
Target Start/End: Original strand, 1358466 - 1358807
Alignment:
| Q |
1 |
cgagactgaggtctagttttaatttattttcaatgcctcttcaacgaacatatatatagttttgaacttagatggttaatcggtttgtcatggttaatct |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||| |
|
|
| T |
1358466 |
cgagaccgaggtctagttttaatttattttcaatgccttttcaatgaacatatatatagttttgaatttagatggttaattggtttgtcatggttaatct |
1358565 |
T |
|
| Q |
101 |
acttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatactacgacggacgttactggacaatgtggaagttgcctttgtttggagcaac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1358566 |
acttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagcaac |
1358665 |
T |
|
| Q |
201 |
tgatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcgagttcaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1358666 |
tgatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaa |
1358765 |
T |
|
| Q |
301 |
tgcatcagtttcattgcacacacacctgaagttcactaagtt |
342 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
1358766 |
tgcatcagtttcattgcacacacacctgaagtttactaagtt |
1358807 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 1350560 - 1350887
Alignment:
| Q |
1 |
cgagactgaggtctagttttaatttattttcaatgcctcttcaacgaacatatatatagttttgaacttagatggttaatcggtttgtcatggttaatct |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1350560 |
cgagaccgaggtctagttttaatttattttcaatgccttttcaacgaacatatatatagttttgaacttagatggttaatcggtttgtcatggttaatct |
1350659 |
T |
|
| Q |
101 |
acttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatactacgacggacgttactggacaatgtggaagttgcctttgtttggagcaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1350660 |
acttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagcaac |
1350759 |
T |
|
| Q |
201 |
tgatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcgagttcaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1350760 |
tgatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaa |
1350859 |
T |
|
| Q |
301 |
tgcatcagtttcattgcacacacacctg |
328 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
1350860 |
tgcatcagtttcattgcacacacacctg |
1350887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 308; E-Value: 1e-173
Query Start/End: Original strand, 1 - 328
Target Start/End: Original strand, 1384214 - 1384541
Alignment:
| Q |
1 |
cgagactgaggtctagttttaatttattttcaatgcctcttcaacgaacatatatatagttttgaacttagatggttaatcggtttgtcatggttaatct |
100 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1384214 |
cgagaccgaggtctagttttaatttattttcaatgccttttcaacgaacatatatatagttttgaacttagatggttaatcggtttgtcatggttaatct |
1384313 |
T |
|
| Q |
101 |
acttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatactacgacggacgttactggacaatgtggaagttgcctttgtttggagcaac |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1384314 |
acttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatattatgacggacgttactggacaatgtggaagttgcctttgtttggagcaac |
1384413 |
T |
|
| Q |
201 |
tgatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcgagttcaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
1384414 |
tgatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttcaa |
1384513 |
T |
|
| Q |
301 |
tgcatcagtttcattgcacacacacctg |
328 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
1384514 |
tgcatcagtttcattgcacacacacctg |
1384541 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 228; E-Value: 1e-125
Query Start/End: Original strand, 100 - 339
Target Start/End: Original strand, 1374117 - 1374356
Alignment:
| Q |
100 |
tacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatactacgacggacgttactggacaatgtggaagttgcctttgtttggagcaa |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1374117 |
tacttgcagaaaggatttgtgtaccgtgagaaccacagttcaccaggatactatgacggacgttactggacaatgtggaagttgcctttgtttggagcaa |
1374216 |
T |
|
| Q |
200 |
ctgatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcgagttca |
299 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1374217 |
ctgatgcttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcaagttca |
1374316 |
T |
|
| Q |
300 |
atgcatcagtttcattgcacacacacctgaagttcactaa |
339 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||| |
|
|
| T |
1374317 |
atgcatcagtttcattgcacacacacctgaagtttactaa |
1374356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 465 - 558
Target Start/End: Original strand, 1395028 - 1395121
Alignment:
| Q |
465 |
gaaaaatgggatgtataagattaagagttaatgaatgaaatggttacttaattcccaagttacttaaaagaatccattatctgtgtagttttcc |
558 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
1395028 |
gaaaaatgggatgtataagattaagagttaatgaatgaaatggttacttaattcccaagttacttaaaagaatccattatctatgtagttttcc |
1395121 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 108; Significance: 6e-54; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 107 - 326
Target Start/End: Original strand, 7010315 - 7010534
Alignment:
| Q |
107 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatactacgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
206 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||| |||||| | |
|
|
| T |
7010315 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgtttggagccactgattc |
7010414 |
T |
|
| Q |
207 |
ttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcgagttcaatgcatc |
306 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | ||||||||| | | || || | ||||| ||||| ||||| ||||||| ||| || ||||| |
|
|
| T |
7010415 |
ttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcatt |
7010514 |
T |
|
| Q |
307 |
agtttcattgcacacacacc |
326 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
7010515 |
agtttcattgctcacacacc |
7010534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 100; E-Value: 3e-49
Query Start/End: Original strand, 107 - 326
Target Start/End: Original strand, 7007237 - 7007456
Alignment:
| Q |
107 |
agaaaggatttgtgtaccgtgagaaccacagttcaccaggatactacgacggacgttactggacaatgtggaagttgcctttgtttggagcaactgatgc |
206 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||||| ||||| || ||| | |
|
|
| T |
7007237 |
agaaaggatttgtctaccgtgagaaccacagttcaccaggatactatgatggacgttactggacaatgtggaagttgcctttgttcggagccaccgattc |
7007336 |
T |
|
| Q |
207 |
ttctcaagtgttgaaggagcttgatgaagttgttgttgcttaccctaatgcctttgtccgtatcatcggattcgacaacgttcgtcgagttcaatgcatc |
306 |
Q |
| |
|
||||||||||||||||||||||| ||||| | | ||||||||| | | || || | ||||| ||||| ||||| ||||||| ||| || ||||| |
|
|
| T |
7007337 |
ttctcaagtgttgaaggagcttgctgaagctaaagctgcttacccagaatcattcatcagaatcattggatttgacaatgttcgtcaagtgcagtgcatt |
7007436 |
T |
|
| Q |
307 |
agtttcattgcacacacacc |
326 |
Q |
| |
|
||||||||||| |||||||| |
|
|
| T |
7007437 |
agtttcattgctcacacacc |
7007456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 465 - 533
Target Start/End: Original strand, 10387330 - 10387398
Alignment:
| Q |
465 |
gaaaaatgggatgtataagattaagagttaatgaatgaaatggttacttaattcccaagttacttaaaa |
533 |
Q |
| |
|
||||||||| ||||||||||||||||||||||||| |||||||||||| |||| ||||||||| |||| |
|
|
| T |
10387330 |
gaaaaatggaatgtataagattaagagttaatgaacaaaatggttactttattctcaagttactaaaaa |
10387398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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