View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0199-INSERTION-3 (Length: 571)
Name: NF0199-INSERTION-3
Description: NF0199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0199-INSERTION-3 |
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| [»] chr1 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 302; Significance: 1e-169; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 302; E-Value: 1e-169
Query Start/End: Original strand, 254 - 571
Target Start/End: Original strand, 41859082 - 41859399
Alignment:
| Q |
254 |
ccccctgttccttgtgatttaagctactgttttgtaccttcgtctatgaatgctgaacatttactatgacagtgtaggatggatggcaggaccatttgac |
353 |
Q |
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| T |
41859082 |
ccccctattccttgtgatttaagctactgttttgtaccttcgtttatgaatgctgaacatttactatgacagtgtaggaccgatggcaggaccatttgac |
41859181 |
T |
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| Q |
354 |
actgtcaaaggggttaataccaccaaggaagaatggaagattggagttcgaataacagatatgtggattgttacaaacatgaataaccatcaacatcttg |
453 |
Q |
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| T |
41859182 |
actgtcaaaggggttaataccaccaaggaagaatggaagattggagttcgaataacagatatgtggattgttacaaacatgaataaccatcaacatcttg |
41859281 |
T |
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| Q |
454 |
aaatggttttaatggataccaaggtgaactccaactaaatatctttttcattctgatttaataaaaatgattaaatgcatgtttggttttaatttatgat |
553 |
Q |
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| T |
41859282 |
aaatggttttaatggataccaaggtgaactccaactaaatatctttttcattctgatttaataaaaatgattaaatgcatgtttggttttaatttatgat |
41859381 |
T |
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| Q |
554 |
tctttttgttatcagggg |
571 |
Q |
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| T |
41859382 |
tctttttgttatcagggg |
41859399 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 255 - 557
Target Start/End: Original strand, 41886989 - 41887291
Alignment:
| Q |
255 |
cccctgttccttgtgatttaagctactgttttgtaccttcgtctatgaatgctgaacatttactatgacagtgtaggatggatggcaggaccatttgaca |
354 |
Q |
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| T |
41886989 |
cccctattccttgtgatttaagctactgttttgtaccttcgtttgtgaaagctaaacatttattatgacagtgtaggatcgatggcagaaccatttgaca |
41887088 |
T |
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| Q |
355 |
ctgtcaaaggggttaataccaccaaggaagaatggaagattggagttcgaataacagatatgtggattgttacaaacatgaataaccatcaacatcttga |
454 |
Q |
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| T |
41887089 |
ctgtcaaagggattaataccaccaaggaagaatggaagattggagttagaataacagatatgtggattgttacaaacatgaataaccatcaacatcttga |
41887188 |
T |
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| Q |
455 |
aatggttttaatggataccaaggtgaactccaactaaatatctttttcattctgatttaataaaaatgattaaatgcatgtttggttttaatttatgatt |
554 |
Q |
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| T |
41887189 |
aacggttttaatggatgtcaaggtgaactccaactaaatgtctttttcattctgatttaattaaaatgattaaatacatgtttggttttaatttacgatt |
41887288 |
T |
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| Q |
555 |
ctt |
557 |
Q |
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| T |
41887289 |
ctt |
41887291 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 154; E-Value: 2e-81
Query Start/End: Original strand, 265 - 505
Target Start/End: Original strand, 41877981 - 41878224
Alignment:
| Q |
265 |
ttgtgatttaagctactgttttgtaccttcgtctatgaatgctgaacatttactatgacagtgtaggatggatggcaggaccatttgacactgtcaaagg |
364 |
Q |
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| T |
41877981 |
ttgtgatttaagttaaggttttgtgccttcatttgtgaaatctgaacatttattatgacagtgtaggatcgatggcaggaccatttgacactgtcaaagg |
41878080 |
T |
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| Q |
365 |
ggttaatacca---ccaaggaagaatggaagattggagttcgaataacagatatgtggattgttacaaacatgaataaccatcaacatcttgaaatggtt |
461 |
Q |
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| T |
41878081 |
gattaataccaccaccaaggaaaaatggatgattggagttagaataacagatatgtggattgttacaaacatgaataaccatcaacatcttgaaatggtt |
41878180 |
T |
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| Q |
462 |
ttaatggataccaaggtgaactccaactaaatatctttttcatt |
505 |
Q |
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| T |
41878181 |
ttaacagattccaaggtgaactccaactaaatatttttttcatt |
41878224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 143; E-Value: 7e-75
Query Start/End: Original strand, 1 - 196
Target Start/End: Original strand, 41858831 - 41859023
Alignment:
| Q |
1 |
gtaccaacaattcctgtgttggccgttgggccagtacctaagtatttagcccctgctagtactagacgccggtttagtcggttattgagctggatatgga |
100 |
Q |
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| T |
41858831 |
gtaccaacaattcctgtgttggccgttgggccagtacctaagtatttagcctctgctagta---gacgccggtttagtcggttattgagctggatatgga |
41858927 |
T |
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| Q |
101 |
gtttccgaaatataataatttatgttgtttgagttttatcctannnnnnnnngtgtaaatgcacagtgaatgagatgtttcaacaattttctgtcc |
196 |
Q |
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| T |
41858928 |
gtttccgaaatataataatttatgttgtttgagttttattctatttttttttgtgtaaatgcatagtgaatgagatgtttcaacaattttctgtcc |
41859023 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 523 - 571
Target Start/End: Original strand, 41878222 - 41878270
Alignment:
| Q |
523 |
attaaatgcatgtttggttttaatttatgattctttttgttatcagggg |
571 |
Q |
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| T |
41878222 |
attaaatgcatgcttggttttaatttaagcttctttttgttattagggg |
41878270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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