View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0199_low_1 (Length: 763)

Name: NF0199_low_1
Description: NF0199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0199_low_1
NF0199_low_1
[»] chr5 (27 HSPs)
chr5 (15-286)||(39777089-39777359)
chr5 (413-635)||(39776856-39777077)
chr5 (106-282)||(32743840-32744015)
chr5 (295-399)||(19655161-19655265)
chr5 (291-389)||(12913802-12913900)
chr5 (309-399)||(29699384-29699474)
chr5 (295-399)||(291100-291204)
chr5 (320-399)||(3899867-3899946)
chr5 (300-399)||(16439146-16439245)
chr5 (320-399)||(16971172-16971251)
chr5 (320-399)||(16802472-16802551)
chr5 (295-376)||(19598335-19598416)
chr5 (320-389)||(26662427-26662496)
chr5 (320-389)||(26934022-26934091)
chr5 (661-702)||(39776828-39776869)
chr5 (291-399)||(3180091-3180198)
chr5 (344-399)||(2953242-2953297)
chr5 (295-354)||(16971220-16971279)
chr5 (295-341)||(13312267-13312313)
chr5 (320-381)||(28818945-28819006)
chr5 (285-382)||(39031199-39031296)
chr5 (318-398)||(38134405-38134485)
chr5 (295-354)||(2953266-2953325)
chr5 (295-354)||(3899915-3899974)
chr5 (296-435)||(30117832-30117962)
chr5 (349-399)||(2093968-2094018)
chr5 (288-341)||(12913892-12913945)
[»] chr8 (20 HSPs)
chr8 (295-399)||(5033164-5033268)
chr8 (295-399)||(35441000-35441104)
chr8 (295-399)||(33841622-33841726)
chr8 (291-389)||(34229640-34229738)
chr8 (295-399)||(8243419-8243523)
chr8 (295-389)||(45191168-45191262)
chr8 (295-376)||(5667100-5667181)
chr8 (291-399)||(4958599-4958705)
chr8 (295-399)||(8796425-8796529)
chr8 (295-399)||(10086760-10086864)
chr8 (295-354)||(5033237-5033296)
chr8 (344-399)||(34541834-34541889)
chr8 (320-399)||(39850983-39851062)
chr8 (295-341)||(5667186-5667232)
chr8 (295-365)||(43844534-43844604)
chr8 (320-373)||(6296633-6296686)
chr8 (296-341)||(10086846-10086891)
chr8 (295-362)||(2581828-2581895)
chr8 (295-354)||(33841594-33841653)
chr8 (295-354)||(35440972-35441031)
[»] chr1 (36 HSPs)
chr1 (291-399)||(9157309-9157417)
chr1 (295-399)||(48993948-48994052)
chr1 (295-399)||(32540779-32540883)
chr1 (295-399)||(37155049-37155153)
chr1 (295-396)||(29179631-29179732)
chr1 (285-382)||(36290455-36290552)
chr1 (295-399)||(17127595-17127699)
chr1 (295-399)||(5995372-5995476)
chr1 (288-376)||(44706838-44706926)
chr1 (295-389)||(1091585-1091679)
chr1 (291-389)||(4608995-4609093)
chr1 (295-368)||(21630045-21630118)
chr1 (318-399)||(46333977-46334058)
chr1 (320-398)||(29371396-29371474)
chr1 (299-389)||(45728294-45728384)
chr1 (318-399)||(33219599-33219680)
chr1 (283-363)||(28395628-28395708)
chr1 (295-399)||(48498418-48498522)
chr1 (335-399)||(741533-741597)
chr1 (320-376)||(5694943-5694999)
chr1 (320-399)||(34062237-34062316)
chr1 (295-354)||(48993920-48993979)
chr1 (349-399)||(1819520-1819570)
chr1 (344-398)||(15220863-15220917)
chr1 (320-389)||(8337892-8337961)
chr1 (291-354)||(17127563-17127626)
chr1 (291-354)||(29371444-29371507)
chr1 (295-354)||(49444916-49444975)
chr1 (296-354)||(29179601-29179659)
chr1 (295-340)||(5995459-5995504)
chr1 (295-399)||(19711211-19711313)
chr1 (350-399)||(28928810-28928859)
chr1 (295-340)||(46932000-46932045)
chr1 (295-340)||(46932072-46932116)
chr1 (324-389)||(47303427-47303492)
chr1 (320-389)||(48604988-48605057)
[»] chr4 (30 HSPs)
chr4 (288-399)||(23444300-23444411)
chr4 (295-399)||(51265448-51265552)
chr4 (295-399)||(6271705-6271809)
chr4 (295-399)||(35682169-35682273)
chr4 (309-399)||(47661859-47661949)
chr4 (285-381)||(47762601-47762697)
chr4 (295-389)||(26186057-26186149)
chr4 (295-382)||(30861822-30861909)
chr4 (295-342)||(2325068-2325115)
chr4 (283-354)||(47661918-47661989)
chr4 (320-398)||(40789207-40789285)
chr4 (350-399)||(28693954-28694003)
chr4 (294-354)||(53954686-53954746)
chr4 (283-354)||(23444260-23444331)
chr4 (344-399)||(42375062-42375117)
chr4 (344-399)||(50384136-50384191)
chr4 (289-351)||(44380009-44380071)
chr4 (350-399)||(31430492-31430541)
chr4 (350-399)||(52028607-52028656)
chr4 (320-389)||(55090037-55090106)
chr4 (294-354)||(35682242-35682302)
chr4 (291-326)||(25617980-25618015)
chr4 (295-354)||(42375086-42375145)
chr4 (320-387)||(53954638-53954705)
chr4 (295-357)||(3862619-3862681)
chr4 (295-357)||(3871376-3871438)
chr4 (295-341)||(30709989-30710035)
chr4 (296-398)||(44379934-44380036)
chr4 (344-389)||(47404626-47404671)
chr4 (283-320)||(54716349-54716386)
[»] chr3 (17 HSPs)
chr3 (291-399)||(33689175-33689283)
chr3 (295-399)||(30734433-30734537)
chr3 (288-389)||(43139750-43139851)
chr3 (295-399)||(47492078-47492182)
chr3 (291-381)||(55223231-55223321)
chr3 (295-399)||(41752967-41753071)
chr3 (291-354)||(30734401-30734464)
chr3 (296-389)||(50524706-50524799)
chr3 (295-399)||(51046104-51046208)
chr3 (320-399)||(30476505-30476584)
chr3 (320-399)||(47677286-47677365)
chr3 (309-372)||(50549992-50550055)
chr3 (330-389)||(29031755-29031814)
chr3 (320-372)||(39385746-39385798)
chr3 (320-399)||(1801477-1801556)
chr3 (296-398)||(30580788-30580890)
chr3 (295-340)||(1801449-1801494)
[»] scaffold0586 (1 HSPs)
scaffold0586 (291-389)||(7088-7185)
[»] chr7 (17 HSPs)
chr7 (295-399)||(11016872-11016976)
chr7 (295-399)||(41018259-41018363)
chr7 (295-372)||(45231908-45231985)
chr7 (298-399)||(15027548-15027649)
chr7 (295-376)||(38975808-38975889)
chr7 (295-399)||(34854726-34854830)
chr7 (289-376)||(30217508-30217594)
chr7 (295-399)||(4290548-4290652)
chr7 (295-341)||(11016958-11017004)
chr7 (310-376)||(22764754-22764820)
chr7 (295-389)||(27028834-27028928)
chr7 (320-398)||(42628323-42628401)
chr7 (320-373)||(10419486-10419539)
chr7 (295-354)||(42628371-42628430)
chr7 (298-340)||(48000827-48000869)
chr7 (320-389)||(7671952-7672021)
chr7 (295-340)||(38975895-38975940)
[»] chr2 (22 HSPs)
chr2 (295-399)||(16514427-16514531)
chr2 (295-376)||(29508745-29508826)
chr2 (311-398)||(6721970-6722057)
chr2 (291-354)||(14470591-14470654)
chr2 (310-387)||(8534164-8534241)
chr2 (291-338)||(45213892-45213939)
chr2 (309-399)||(15011297-15011387)
chr2 (320-381)||(38933615-38933676)
chr2 (283-351)||(14892339-14892407)
chr2 (320-399)||(2828612-2828691)
chr2 (330-389)||(14229394-14229453)
chr2 (291-389)||(24115919-24116017)
chr2 (350-399)||(37961764-37961813)
chr2 (303-399)||(37762032-37762128)
chr2 (320-399)||(6217255-6217334)
chr2 (295-354)||(16514500-16514559)
chr2 (295-338)||(29508693-29508736)
chr2 (329-399)||(14470623-14470693)
chr2 (320-381)||(2893991-2894052)
chr2 (295-340)||(6217227-6217272)
chr2 (295-376)||(9173035-9173116)
chr2 (320-389)||(29925611-29925680)
[»] chr6 (10 HSPs)
chr6 (295-390)||(24587464-24587559)
chr6 (291-389)||(17750902-17750999)
chr6 (288-389)||(551206-551307)
chr6 (344-389)||(13043509-13043554)
chr6 (344-399)||(12343152-12343207)
chr6 (320-399)||(24618632-24618711)
chr6 (320-377)||(31654333-31654390)
chr6 (320-399)||(10521880-10521959)
chr6 (291-354)||(17750978-17751041)
chr6 (295-341)||(24618604-24618650)
[»] scaffold0016 (2 HSPs)
scaffold0016 (295-354)||(49706-49765)
scaffold0016 (320-399)||(49734-49813)
[»] scaffold0180 (1 HSPs)
scaffold0180 (289-354)||(19119-19184)
[»] scaffold1033 (1 HSPs)
scaffold1033 (344-399)||(2265-2320)
[»] scaffold1029 (1 HSPs)
scaffold1029 (344-399)||(2265-2320)
[»] scaffold0161 (1 HSPs)
scaffold0161 (295-398)||(27252-27355)
[»] scaffold0047 (1 HSPs)
scaffold0047 (320-399)||(63785-63864)
[»] scaffold0481 (1 HSPs)
scaffold0481 (350-398)||(2919-2967)


Alignment Details
Target: chr5 (Bit Score: 248; Significance: 1e-137; HSPs: 27)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 248; E-Value: 1e-137
Query Start/End: Original strand, 15 - 286
Target Start/End: Complemental strand, 39777359 - 39777089
Alignment:
Q  15 tatggtagaagaacgatagaaaagatgagagcttaatagaaagcatgatgagcttcttttctatatgttccatcttctctctttaatatagagtatatat 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |||||||||||    
T  39777359 tatggtagaagaacgatagaaaagatgagagcttaatagaaagcatgatgagcttcttttctatatgttccctcttctctcttttata-agagtatatat 39777261  T
Q  115 atgatgctagtggcacaaagtaaatgaatggccctatctttccgttgcaagatttcttagcaatataaaggatatttatggcaatgaaaactgatggaat 214  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39777260 atgatgctagtggcacaaactaaatgaatggccctatctttccgttgcaagatttcttagcaatataaaggatatttatggcaatgaaaactgatggaat 39777161  T
Q  215 aaaggttgattttttcatgtaacgtttagccaattgaatatgaagaattaaggagacaaacaatagtaggta 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||    
T  39777160 aaaggttgattttttcatgtaacgtttagccaattgaatatgaagaattaaggagacaaacaatattaggta 39777089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 413 - 635
Target Start/End: Complemental strand, 39777077 - 39776856
Alignment:
Q  413 caatgtcacccaactctatatcatcaagtatccaacacacttaattcatcacagaaaaacgacaacggcctcactagcggcggcgtggatgctgtaaatt 512  Q
    ||||||||||||||||||| ||| | | ||||||||||| |||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  39777077 caatgtcacccaactctatgtcacccaatatccaacacatttaattcatcacagaaaaacgacagcggcctcactagcggcagcgtggatgctgtaaatt 39776978  T
Q  513 ttatgttatgaaaacaaggtgaaactaaatgtcgttcgagtaggaaacaatgtgaaaataataaataatcattagtattgttggtatttgaagagcaaag 612  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39776977 ttatgttatgaaaacaaggtgaaactaaatgtcgttcgagtaggaaacaatgtgaaaataataaataatcattagtattgttggtatttgaagagcaaag 39776878  T
Q  613 caaattagaaaacatgttagtta 635  Q
    |||||||| ||||||||||||||    
T  39776877 caaattag-aaacatgttagtta 39776856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 106 - 282
Target Start/End: Original strand, 32743840 - 32744015
Alignment:
Q  106 agtatatatatgatgctagtggcacaaagtaaatgaatggccctatctttccgttgcaagatttcttagcaatataaaggatatttatggcaatgaaaac 205  Q
    ||||||||| ||| |  |||||||||||  ||||||||||| ||||||||||||||||| |||||||||||| |||||  ||||| ||||||||||||||    
T  32743840 agtatatatgtgacgtcagtggcacaaacaaaatgaatggctctatctttccgttgcaacatttcttagcaacataaaaaatattaatggcaatgaaaac 32743939  T
Q  206 tgatggaataaaggttgattttttcatgtaacgtttagccaattgaatatgaagaattaaggagacaaacaatagta 282  Q
    | ||||| |||  |||  ||||||| ||||| ||||||| ||||||||||||||| ||||| || ||||||||||||    
T  32743940 taatggattaagcgtttgttttttc-tgtaatgtttagctaattgaatatgaagatttaagtaggcaaacaatagta 32744015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 19655161 - 19655265
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggt 394  Q
    ||||||||||||| |||||||||| |||||||| ||||| ||||||   ||||  ||||||||||||||||||||||||||| |||| ||||||| |||     
T  19655161 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattgga 19655260  T
Q  395 caatg 399  Q
    |||||    
T  19655261 caatg 19655265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 291 - 389
Target Start/End: Original strand, 12913802 - 12913900
Alignment:
Q  291 ttgtgtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtga 389  Q
    |||||||||||| ||||  ||||||||| |||||||| ||||| |||||||  |||| ||||||| ||||||||||||||||||||  ||| |||||||    
T  12913802 ttgtgtgacatatagttgagtgacattggtgacattggccaatcacaatgtcacaattcttgtgtatctctctctttcacaagcattatgacattgtga 12913900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 309 - 399
Target Start/End: Original strand, 29699384 - 29699474
Alignment:
Q  309 ggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaatg 399  Q
    |||||||||| |||||||| ||||| ||||||   |||| |||||||||||||||||||||||||||| |||| ||||||| ||| |||||    
T  29699384 ggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatg 29699474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 291100 - 291204
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggt 394  Q
    ||||||||||||| |||||||||| |||||||| ||||| ||||||   |||| ||||| ||||| |||||||||||| ||| |||| ||||||| || |    
T  291100 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtatttctttctctttcacaaacattgtgacattgtgattgat 291199  T
Q  395 caatg 399  Q
    |||||    
T  291200 caatg 291204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 320 - 399
Target Start/End: Original strand, 3899867 - 3899946
Alignment:
Q  320 tgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaatg 399  Q
    |||||||| ||||| ||||||   |||| |||||||||||||||||||||||||||| |||| ||||||| |||||||||    
T  3899867 tgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggtcaatg 3899946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 300 - 399
Target Start/End: Original strand, 16439146 - 16439245
Alignment:
Q  300 atagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaatg 399  Q
    |||||||| ||| | |||| ||||||||  |||| |||||||  |||| |||||||||||||||||||||||||||| |||| ||||||| || ||||||    
T  16439146 atagagttgggtaatattggtgacattggtcaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgatcaatg 16439245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 320 - 399
Target Start/End: Original strand, 16971172 - 16971251
Alignment:
Q  320 tgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaatg 399  Q
    |||||||| ||||| ||||||   |||| |||||||||||||||||||||||||||| |||| ||||||| |||||||||    
T  16971172 tgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggtcaatg 16971251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 320 - 399
Target Start/End: Original strand, 16802472 - 16802551
Alignment:
Q  320 tgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaatg 399  Q
    |||||||| ||||| |||||||  ||||| |||||||||||||||||| |||||||| |||| ||| ||| |||||||||    
T  16802472 tgacattggccaatcacaatgtaacaatatttgtgtttctctctcttttacaagcattgtgacattctgattggtcaatg 16802551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 295 - 376
Target Start/End: Original strand, 19598335 - 19598416
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcat 376  Q
    ||||||||||||| ||| |||||| ||||||||  |||| |||||    |||| ||||||||||||||||||||||||||||    
T  19598335 gtgacatagagttgggtaacattggtgacattggtcaatcacaataccacaatgcttgtgtttctctctctttcacaagcat 19598416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 320 - 389
Target Start/End: Original strand, 26662427 - 26662496
Alignment:
Q  320 tgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtga 389  Q
    |||||||||||||| |||||||| || | ||||||||||||||| ||||||||| || |||| |||||||    
T  26662427 tgacattgaccaatcacaatgttacattgcttgtgtttctctctttttcacaagtattgtgacattgtga 26662496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 320 - 389
Target Start/End: Original strand, 26934022 - 26934091
Alignment:
Q  320 tgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtga 389  Q
    |||||||||||||| |||||||| || | ||||||||||||||| ||||||||| || |||| |||||||    
T  26934022 tgacattgaccaatcacaatgttacattgcttgtgtttctctctttttcacaagtattgtgacattgtga 26934091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 661 - 702
Target Start/End: Complemental strand, 39776869 - 39776828
Alignment:
Q  661 aaacatgttagtaattaaattcagagattgagaaatgacaac 702  Q
    |||||||||||| |||||||||||||||||||||||||||||    
T  39776869 aaacatgttagttattaaattcagagattgagaaatgacaac 39776828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 291 - 399
Target Start/End: Complemental strand, 3180198 - 3180091
Alignment:
Q  291 ttgtgtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaa 390  Q
    |||||| |||||||||| ||| |||||| ||||||||  |||| ||||||   |||| |||||||||||||||||||||||| ||| |||| ||| |||     
T  3180198 ttgtgtcacatagagtt-ggtaacattggtgacattggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaaacattgtgacattatgat 3180100  T
Q  391 tggtcaatg 399  Q
    || ||||||    
T  3180099 tgatcaatg 3180091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 344 - 399
Target Start/End: Original strand, 2953242 - 2953297
Alignment:
Q  344 caatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaatg 399  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||| ||| |||||    
T  2953242 caatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatg 2953297  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 295 - 354
Target Start/End: Complemental strand, 16971279 - 16971220
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtg 354  Q
    ||||||||||||| |||||||||| |||||||||||||| |||||||  |||| ||||||    
T  16971279 gtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtg 16971220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 295 - 341
Target Start/End: Original strand, 13312267 - 13312313
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgt 341  Q
    ||||||||||||| |||||||||||||||||||| |||| |||||||    
T  13312267 gtgacatagagttaggtgacattgatgacattgatcaatcacaatgt 13312313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 320 - 381
Target Start/End: Original strand, 28818945 - 28819006
Alignment:
Q  320 tgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtga 381  Q
    ||||||||  |||| |||||||  |||||||||| |||||||||||||||||||||| ||||    
T  28818945 tgacattggtcaatcacaatgtcacaatacttgtatttctctctctttcacaagcattgtga 28819006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 285 - 382
Target Start/End: Complemental strand, 39031296 - 39031199
Alignment:
Q  285 tagtatttgtgtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgat 382  Q
    |||||||||  |||||||||||  |||||||||| ||||| ||| |||| ||||| |   |||| |||| ||||||| |||||||||||||| |||||    
T  39031296 tagtatttggatgacatagagtggggtgacattggtgacactgatcaatcacaatatcataatatttgtatttctctttctttcacaagcattgtgat 39031199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 318 - 398
Target Start/End: Complemental strand, 38134485 - 38134405
Alignment:
Q  318 gatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaat 398  Q
    ||||| |||| ||||| |||||||  |||| ||||||||||| |||||||||| ||||| |||| ||||||| ||| ||||    
T  38134485 gatgatattggccaatcacaatgtcacaatgcttgtgtttctttctctttcactagcattgtgacattgtgattggccaat 38134405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 295 - 354
Target Start/End: Complemental strand, 2953325 - 2953266
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtg 354  Q
    ||||||||||||| |||||||||| |||||||| ||||| |||||||  |||| ||||||    
T  2953325 gtgacatagagttgggtgacattggtgacattggccaatcacaatgtcacaatgcttgtg 2953266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 295 - 354
Target Start/End: Complemental strand, 3899974 - 3899915
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtg 354  Q
    ||||| ||||||| |||||||||| |||||||||||||| |||||||  |||| ||||||    
T  3899974 gtgacttagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtg 3899915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 296 - 435
Target Start/End: Complemental strand, 30117962 - 30117832
Alignment:
Q  296 tgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtc 395  Q
    |||||||||||| | |||||||| ||| ||||  |||| | ||||   |||| ||||||||||||||| ||||| || ||| |||| ||||||| |||||    
T  30117962 tgacatagagttggatgacattggtgatattggtcaatcataatgccacaatgcttgtgtttctctctttttcataaacattgtgacattgtgattggtc 30117863  T
Q  396 aatgagatggacatcatcaatgtcacccaactctatatca 435  Q
    |||         |||| |||||||||||||||||||||||    
T  30117862 aat---------atcaccaatgtcacccaactctatatca 30117832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 349 - 399
Target Start/End: Complemental strand, 2094018 - 2093968
Alignment:
Q  349 cttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaatg 399  Q
    ||||||||||||||||||||||||||||  ||| ||||||| || ||||||    
T  2094018 cttgtgtttctctctctttcacaagcattatgacattgtgattgatcaatg 2093968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 288 - 341
Target Start/End: Complemental strand, 12913945 - 12913892
Alignment:
Q  288 tatttgtgtgacatagagtttggtgacattgatgacattgaccaattacaatgt 341  Q
    |||||||||||||||||||| |||||||||| ||| ||||  |||| |||||||    
T  12913945 tatttgtgtgacatagagttgggtgacattggtgatattggtcaatcacaatgt 12913892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 65; Significance: 4e-28; HSPs: 20)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 5033164 - 5033268
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggt 394  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||   |||| |||||||||||||||||||||||||||| |||| ||||||| ||||    
T  5033164 gtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggt 5033263  T
Q  395 caatg 399  Q
    |||||    
T  5033264 caatg 5033268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 295 - 399
Target Start/End: Complemental strand, 35441104 - 35441000
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggt 394  Q
    ||||||||||||| |||||||||| |||||||| ||||| ||||||   |||| |||||||||||||||||||||||||||| |||| ||||||| ||||    
T  35441104 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggt 35441005  T
Q  395 caatg 399  Q
    |||||    
T  35441004 caatg 35441000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 295 - 399
Target Start/End: Complemental strand, 33841726 - 33841622
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggt 394  Q
    ||||||||||||| |||||||||| |||||||||||||| | ||||   |||| |||||||||||||||||||||||||||| |||| | ||||| ||||    
T  33841726 gtgacatagagttgggtgacattggtgacattgaccaatcagaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacaatgtgattggt 33841627  T
Q  395 caatg 399  Q
    |||||    
T  33841626 caatg 33841622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 291 - 389
Target Start/End: Original strand, 34229640 - 34229738
Alignment:
Q  291 ttgtgtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtga 389  Q
    ||||||||||||||||| |||||||||  ||||||    |||| |||||||   ||| |||||||||||||||||||||||||||| ||||||||||||    
T  34229640 ttgtgtgacatagagttgggtgacattagtgacatgagtcaatcacaatgtcagaatgcttgtgtttctctctctttcacaagcattgtgatattgtga 34229738  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 295 - 399
Target Start/End: Complemental strand, 8243523 - 8243419
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggt 394  Q
    ||||||||||||| |||||||||| |||| |||  |||| ||||||   |||| |||||||||||||||||||||||||||| |||  ||||||| || |    
T  8243523 gtgacatagagttgggtgacattggtgacgttggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattgat 8243424  T
Q  395 caatg 399  Q
    |||||    
T  8243423 caatg 8243419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 295 - 389
Target Start/End: Complemental strand, 45191262 - 45191168
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtga 389  Q
    ||||||||||||| | ||| |||| |||||||||||||| | |||||| ||||  |||||||||||||||||||| |||||| |||  |||||||    
T  45191262 gtgacatagagttggatgatattggtgacattgaccaatcaaaatgttacaatgtttgtgtttctctctctttcataagcattgtggcattgtga 45191168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 295 - 376
Target Start/End: Original strand, 5667100 - 5667181
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcat 376  Q
    ||||||||||||| | |||||||| ||||||||  |||| |||||||  |||| ||||| ||||||||||||||||||||||    
T  5667100 gtgacatagagttggatgacattggtgacattggtcaatcacaatgtcacaatgcttgtatttctctctctttcacaagcat 5667181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 291 - 399
Target Start/End: Original strand, 4958599 - 4958705
Alignment:
Q  291 ttgtgtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaa 390  Q
    |||||||||||||| |||| ||| ||||||||||||| ||||| |||||||   |||  |||||||||||||||||||||||| || ||||  ||||||     
T  4958599 ttgtgtgacatagaatttg-tgatattgatgacattggccaatcacaatgtcataatgtttgtgtttctctctctttcacaagtattgtga-cttgtgat 4958696  T
Q  391 tggtcaatg 399  Q
    |||||||||    
T  4958697 tggtcaatg 4958705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 8796425 - 8796529
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggt 394  Q
    ||||||||||||| ||||| |||  ||| ||||  |||| |||||||  |||| ||||||||||||| |||||||||||||| |||| ||| ||| ||||    
T  8796425 gtgacatagagttaggtgatatttgtgatattggtcaatcacaatgtcacaatgcttgtgtttctctatctttcacaagcattgtgacattttgattggt 8796524  T
Q  395 caatg 399  Q
    |||||    
T  8796525 caatg 8796529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 10086760 - 10086864
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggt 394  Q
    |||||||||| || |||||||||  ||||||||  |||| |||||||   |||  ||||||||||||||||||||||| ||| |||| ||||||| ||||    
T  10086760 gtgacatagaattgggtgacattagtgacattggtcaatcacaatgtcataatgtttgtgtttctctctctttcacaaacattgtgacattgtgattggt 10086859  T
Q  395 caatg 399  Q
    |||||    
T  10086860 caatg 10086864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 295 - 354
Target Start/End: Complemental strand, 5033296 - 5033237
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtg 354  Q
    ||||||||||||| |||||||||| |||||||||||||| |||||||  |||| ||||||    
T  5033296 gtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtg 5033237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 344 - 399
Target Start/End: Complemental strand, 34541889 - 34541834
Alignment:
Q  344 caatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaatg 399  Q
    |||| |||||||||||||||||||||||||||| |||||||| ||| ||| |||||    
T  34541889 caatgcttgtgtttctctctctttcacaagcattgtgatattatgattggccaatg 34541834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 320 - 399
Target Start/End: Original strand, 39850983 - 39851062
Alignment:
Q  320 tgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaatg 399  Q
    |||||||| ||||| ||||||   ||||  |||||||||||||||||||||||||||  | ||||||||| |||||||||    
T  39850983 tgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattataatattgtgattggtcaatg 39851062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 295 - 341
Target Start/End: Complemental strand, 5667232 - 5667186
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgt 341  Q
    ||||||||||||||| |||||||| |||||||| |||||||||||||    
T  5667232 gtgacatagagtttgatgacattggtgacattggccaattacaatgt 5667186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 295 - 365
Target Start/End: Complemental strand, 43844604 - 43844534
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctct 365  Q
    ||||||||||||| | |||||||| ||| ||||| |||| |||||||  |||| |||||||||||||||||    
T  43844604 gtgacatagagttggatgacattggtgatattgatcaatcacaatgtcacaatgcttgtgtttctctctct 43844534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 320 - 373
Target Start/End: Original strand, 6296633 - 6296686
Alignment:
Q  320 tgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaag 373  Q
    |||||||||||||| |||||||   ||| |||||||||||||||||||||||||    
T  6296633 tgacattgaccaatcacaatgtcataatgcttgtgtttctctctctttcacaag 6296686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 296 - 341
Target Start/End: Complemental strand, 10086891 - 10086846
Alignment:
Q  296 tgacatagagtttggtgacattgatgacattgaccaattacaatgt 341  Q
    |||||||||||| |||||||||| |||||||||||||| |||||||    
T  10086891 tgacatagagttgggtgacattggtgacattgaccaatcacaatgt 10086846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 295 - 362
Target Start/End: Original strand, 2581828 - 2581895
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctc 362  Q
    |||||||||| || |||||||||| |||||||| ||||| ||||||   |||| ||||||||||||||    
T  2581828 gtgacatagaattgggtgacattgttgacattggccaatcacaatgccacaatgcttgtgtttctctc 2581895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 295 - 354
Target Start/End: Original strand, 33841594 - 33841653
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtg 354  Q
    ||||||||||||| |||||||||| |||||||||||||| ||| |||  |||| ||||||    
T  33841594 gtgacatagagttgggtgacattggtgacattgaccaatcacattgtcacaatgcttgtg 33841653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 295 - 354
Target Start/End: Original strand, 35440972 - 35441031
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtg 354  Q
    ||||| ||||||| |||||||||| |||||||||||||| |||||||  |||| ||||||    
T  35440972 gtgacttagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtg 35441031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 65; Significance: 4e-28; HSPs: 36)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 291 - 399
Target Start/End: Original strand, 9157309 - 9157417
Alignment:
Q  291 ttgtgtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaa 390  Q
    ||||||||||||||||| |||||||||| | |||||||||||| |||||||  |||| |||||||||||||||||||| ||||||| ||||||||||||     
T  9157309 ttgtgtgacatagagttgggtgacattggtaacattgaccaatcacaatgtcacaatgcttgtgtttctctctctttctcaagcattgtgatattgtgat 9157408  T
Q  391 tggtcaatg 399  Q
    || ||||||    
T  9157409 tgatcaatg 9157417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 4e-28
Query Start/End: Original strand, 295 - 399
Target Start/End: Complemental strand, 48994052 - 48993948
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggt 394  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||   |||| |||||||||||||||||||||||||||| |||| ||||||| ||||    
T  48994052 gtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggt 48993953  T
Q  395 caatg 399  Q
    |||||    
T  48993952 caatg 48993948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 295 - 399
Target Start/End: Complemental strand, 32540883 - 32540779
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggt 394  Q
    |||||||||| || | |||||||| |||||||||||||| |||||||| |||| |||||||||||||||||||||||||||| |||| ||||||| |||     
T  32540883 gtgacatagaattggatgacattggtgacattgaccaatcacaatgttacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggc 32540784  T
Q  395 caatg 399  Q
    |||||    
T  32540783 caatg 32540779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 37155049 - 37155153
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggt 394  Q
    |||||||||||||||||||||||| |||||||| ||||| |||||||  |||| ||||||||||||||||||||||||| || |||| ||||||| |||     
T  37155049 gtgacatagagtttggtgacattggtgacattggccaatcacaatgtcacaatgcttgtgtttctctctctttcacaagtattgtgacattgtgattggc 37155148  T
Q  395 caatg 399  Q
    |||||    
T  37155149 caatg 37155153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 295 - 396
Target Start/End: Complemental strand, 29179732 - 29179631
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggt 394  Q
    ||||||||||||| |||||||||| |||||||| ||||| ||||||   |||| |||||||||||||||||||||||||||| |||| ||||||| ||||    
T  29179732 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggt 29179633  T
Q  395 ca 396  Q
    ||    
T  29179632 ca 29179631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 285 - 382
Target Start/End: Complemental strand, 36290552 - 36290455
Alignment:
Q  285 tagtatttgtgtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgat 382  Q
    ||||| ||| ||||||||||||| |||||||||| || ||||||||||| |||||||  ||||| ||||||||||||||||||||||||||| |||||    
T  36290552 tagtacttgggtgacatagagttgggtgacattggtggcattgaccaatcacaatgtcacaatatttgtgtttctctctctttcacaagcattgtgat 36290455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 295 - 399
Target Start/End: Complemental strand, 17127699 - 17127595
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggt 394  Q
    |||| |||||||| |||||||||  |||||||||||||| | |||||  |||| |||||||||||||||||||||||||||| |||| ||||||| ||||    
T  17127699 gtgatatagagttaggtgacattagtgacattgaccaatcaaaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggt 17127600  T
Q  395 caatg 399  Q
    |||||    
T  17127599 caatg 17127595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 5995372 - 5995476
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggt 394  Q
    ||||||||||||||| |||||||| | |||||| ||||| ||||||   |||| |||||||||||||||||||||||||||| |||  ||||||| ||||    
T  5995372 gtgacatagagtttgatgacattggtaacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtggcattgtgattggt 5995471  T
Q  395 caatg 399  Q
    |||||    
T  5995472 caatg 5995476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 288 - 376
Target Start/End: Complemental strand, 44706926 - 44706838
Alignment:
Q  288 tatttgtgtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcat 376  Q
    |||||| ||||||||||||| |||||||||| |||||||| ||||| ||||||   |||| ||||||||||||||||||||||||||||    
T  44706926 tatttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccgcaatgcttgtgtttctctctctttcacaagcat 44706838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 295 - 389
Target Start/End: Complemental strand, 1091679 - 1091585
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtga 389  Q
    ||||||||||||| ||||| |||| |||| ||||||||| |||||||  ||||  ||||||||||||||||||||||||||| |||| |||||||    
T  1091679 gtgacatagagttgggtgatattggtgactttgaccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtga 1091585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 291 - 389
Target Start/End: Original strand, 4608995 - 4609093
Alignment:
Q  291 ttgtgtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtga 389  Q
    |||||||| || ||||| |||||||| | ||||||||||| || |||||||  ||||  ||||||||||||||||||||||||||| |||| |||||||    
T  4608995 ttgtgtgatatggagttgggtgacatcggtgacattgacccatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtga 4609093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 295 - 368
Target Start/End: Original strand, 21630045 - 21630118
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttc 368  Q
    |||||||| |||| |||||||||| |||||||||||||| |||||||  |||| ||||||||||||||||||||    
T  21630045 gtgacataaagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgtttctctctctttc 21630118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 318 - 399
Target Start/End: Complemental strand, 46334058 - 46333977
Alignment:
Q  318 gatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaatg 399  Q
    |||||||||||||||| |||||||  |||| ||||||||| |||||||||||||||||| |||| ||||||| ||| |||||    
T  46334058 gatgacattgaccaatcacaatgtcacaatgcttgtgtttttctctctttcacaagcattgtgacattgtgattggccaatg 46333977  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 320 - 398
Target Start/End: Original strand, 29371396 - 29371474
Alignment:
Q  320 tgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaat 398  Q
    |||||||| ||||| |||||||  ||||  ||||||||||||||||||||||||||| |||| ||||||| ||||||||    
T  29371396 tgacattggccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattggtcaat 29371474  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 299 - 389
Target Start/End: Original strand, 45728294 - 45728384
Alignment:
Q  299 catagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtga 389  Q
    ||||||||| ||||| |||| ||| |||||||||| ||||| |  |||| ||||||||||||||||||||||||||||  ||| |||||||    
T  45728294 catagagttgggtgatattggtgatattgaccaatcacaatatcacaatgcttgtgtttctctctctttcacaagcattatgacattgtga 45728384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 318 - 399
Target Start/End: Original strand, 33219599 - 33219680
Alignment:
Q  318 gatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaatg 399  Q
    ||||||||||| |||| |||||||| |||| ||||||||| ||||||||||||||||||  ||| ||||||| || ||||||    
T  33219599 gatgacattgatcaatcacaatgttacaatgcttgtgtttttctctctttcacaagcattatgacattgtgattgatcaatg 33219680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 283 - 363
Target Start/End: Original strand, 28395628 - 28395708
Alignment:
Q  283 ggtagtatttgtgtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctct 363  Q
    ||||| ||||| || ||||||||||  ||||||||| |||||||||||||| |||||||  |||| |||||||||||||||    
T  28395628 ggtagcatttgggtaacatagagttgagtgacattggtgacattgaccaatcacaatgtcacaatgcttgtgtttctctct 28395708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 48498418 - 48498522
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggt 394  Q
    ||||||||||||| |||||||||  ||||||||  |||| | |||    ||||  |||||||||||||||||||||||||||||| | ||||||| ||||    
T  48498418 gtgacatagagttgggtgacatttgtgacattggtcaatcataataccacaatgtttgtgtttctctctctttcacaagcatggtaacattgtgattggt 48498517  T
Q  395 caatg 399  Q
    |||||    
T  48498518 caatg 48498522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 335 - 399
Target Start/End: Complemental strand, 741597 - 741533
Alignment:
Q  335 acaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaatg 399  Q
    |||||||  |||| |||||||||||||||||||||||||||| |||| ||||||| ||| |||||    
T  741597 acaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgggcaatg 741533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 320 - 376
Target Start/End: Complemental strand, 5694999 - 5694943
Alignment:
Q  320 tgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcat 376  Q
    ||||||||  ||||||||||||  ||||| |||||||||||||||||||||||||||    
T  5694999 tgacattggtcaattacaatgtcacaatatttgtgtttctctctctttcacaagcat 5694943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 320 - 399
Target Start/End: Original strand, 34062237 - 34062316
Alignment:
Q  320 tgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaatg 399  Q
    |||||||| ||||| ||||||   |||| ||| |||||||||||||||||||| ||| |||| ||||||| |||||||||    
T  34062237 tgacattggccaatcacaatgccacaatgcttatgtttctctctctttcacaaacattgtgacattgtgattggtcaatg 34062316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 295 - 354
Target Start/End: Original strand, 48993920 - 48993979
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtg 354  Q
    ||||||||||||| |||||||||| |||||||||||||| |||||||  |||| ||||||    
T  48993920 gtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtg 48993979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 349 - 399
Target Start/End: Complemental strand, 1819570 - 1819520
Alignment:
Q  349 cttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaatg 399  Q
    |||||||||||||||||||||||||||| |||| ||||||| || ||||||    
T  1819570 cttgtgtttctctctctttcacaagcattgtgacattgtgattgatcaatg 1819520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 344 - 398
Target Start/End: Original strand, 15220863 - 15220917
Alignment:
Q  344 caatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaat 398  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||| ||| ||||    
T  15220863 caatgcttgtgtttctctctctttcacaagcattgtgagattgtgattggccaat 15220917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 320 - 389
Target Start/End: Complemental strand, 8337961 - 8337892
Alignment:
Q  320 tgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtga 389  Q
    |||||||||||||| ||||||   ||||  ||||||||||||||||||||||| ||| |||| |||||||    
T  8337961 tgacattgaccaatcacaatgccacaatgtttgtgtttctctctctttcacaaacattgtgacattgtga 8337892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 291 - 354
Target Start/End: Original strand, 17127563 - 17127626
Alignment:
Q  291 ttgtgtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtg 354  Q
    |||||||| |||||||| |||||||||  |||||||||||||| |||||||  |||| ||||||    
T  17127563 ttgtgtgatatagagttaggtgacattagtgacattgaccaatcacaatgtcacaatgcttgtg 17127626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 291 - 354
Target Start/End: Complemental strand, 29371507 - 29371444
Alignment:
Q  291 ttgtgtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtg 354  Q
    ||||||||||||||| | |||||||||| ||| |||||||||| |||||||  |||| ||||||    
T  29371507 ttgtgtgacatagagctaggtgacattggtgatattgaccaatcacaatgtcacaatgcttgtg 29371444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 295 - 354
Target Start/End: Original strand, 49444916 - 49444975
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtg 354  Q
    ||||||||||||| |||||||||| |||||| || |||| |||||||| |||| ||||||    
T  49444916 gtgacatagagttgggtgacattggtgacatcgatcaatcacaatgttacaatgcttgtg 49444975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 296 - 354
Target Start/End: Original strand, 29179601 - 29179659
Alignment:
Q  296 tgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtg 354  Q
    |||||||||||| |||||||||| ||||| |||||||| |||||||  |||| ||||||    
T  29179601 tgacatagagttgggtgacattggtgacactgaccaatcacaatgtcacaatgcttgtg 29179659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 295 - 340
Target Start/End: Complemental strand, 5995504 - 5995459
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatg 340  Q
    ||||||||||||| | |||||||| |||||||||||||| ||||||    
T  5995504 gtgacatagagttggatgacattggtgacattgaccaatcacaatg 5995459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 295 - 399
Target Start/End: Complemental strand, 19711313 - 19711211
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggt 394  Q
    |||| ||| ||||||||||||||| | |||||| |  ||||||||||  |||| ||| |||||||  |||||||||| |||| || | ||||||| ||||    
T  19711313 gtgatataaagtttggtgacattggtaacattggctgattacaatgtcacaattcttatgtttct--ctctttcacatgcattgtaacattgtgattggt 19711216  T
Q  395 caatg 399  Q
    |||||    
T  19711215 caatg 19711211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 350 - 399
Target Start/End: Complemental strand, 28928859 - 28928810
Alignment:
Q  350 ttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaatg 399  Q
    ||||||||||||||||||||||||||  |||| ||||||| ||| |||||    
T  28928859 ttgtgtttctctctctttcacaagcactgtgacattgtgattggccaatg 28928810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 295 - 340
Target Start/End: Original strand, 46932000 - 46932045
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatg 340  Q
    ||||||||||||| |||||||||| |||||||| ||||| ||||||    
T  46932000 gtgacatagagttgggtgacattggtgacattggccaatcacaatg 46932045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 295 - 340
Target Start/End: Complemental strand, 46932116 - 46932072
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatg 340  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||    
T  46932116 gtgacatagagtt-ggtgacattggtgacattgaccaatcacaatg 46932072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 324 - 389
Target Start/End: Original strand, 47303427 - 47303492
Alignment:
Q  324 attgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtga 389  Q
    |||||||||| |||||||   |||  ||||||||||||||||||||||| ||| |||| |||||||    
T  47303427 attgaccaatcacaatgtcataatgtttgtgtttctctctctttcacaaacattgtgacattgtga 47303492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 320 - 389
Target Start/End: Complemental strand, 48605057 - 48604988
Alignment:
Q  320 tgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtga 389  Q
    |||||||| ||||||| |||||  |||| |||| |||||||||||||||||||  || |||| |||||||    
T  48605057 tgacattggccaattataatgtcacaatgcttgcgtttctctctctttcacaaatattgtgacattgtga 48604988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 288 - 399
Target Start/End: Complemental strand, 23444411 - 23444300
Alignment:
Q  288 tatttgtgtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgt 387  Q
    |||||| ||||||||||||| |||||||||| |||||||| ||||| ||||||   |||| |||||||||||||||||||||||||||| |||| |||||    
T  23444411 tatttgggtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgt 23444312  T
Q  388 gaatggtcaatg 399  Q
    || |||||||||    
T  23444311 gattggtcaatg 23444300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 51265448 - 51265552
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggt 394  Q
    ||||||||||||| |||||||||| |||||||| ||||| ||||||   |||| |||||||||||||||||||||||||||| |||| ||| ||| ||||    
T  51265448 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattatgattggt 51265547  T
Q  395 caatg 399  Q
    |||||    
T  51265548 caatg 51265552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 6271705 - 6271809
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggt 394  Q
    ||||||||||||| ||||| |||| |||||||| ||||| ||||||   |||| |||||||||||||||||||||||||||| |||| ||||||| |||     
T  6271705 gtgacatagagttgggtgatattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggc 6271804  T
Q  395 caatg 399  Q
    |||||    
T  6271805 caatg 6271809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 35682169 - 35682273
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggt 394  Q
    ||||||||||||| ||||| |||| |||||||| ||||| |||||||   ||||||||||||||||| |||||||||||||| |||| |||||||  |||    
T  35682169 gtgacatagagttaggtgatattggtgacattggccaatcacaatgtcataatacttgtgtttctctatctttcacaagcattgtgacattgtgatcggt 35682268  T
Q  395 caatg 399  Q
    |||||    
T  35682269 caatg 35682273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 309 - 399
Target Start/End: Original strand, 47661859 - 47661949
Alignment:
Q  309 ggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaatg 399  Q
    |||||||||| |||||||| ||||| ||||||   |||| |||||||||||||||||||||||||||| |||| ||||||| |||||||||    
T  47661859 ggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggtcaatg 47661949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 285 - 381
Target Start/End: Original strand, 47762601 - 47762697
Alignment:
Q  285 tagtatttgtgtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtga 381  Q
    ||||||||| ||||||||||| |  |||| |||  |||||||||||||| |||||||| ||||  || |||||||||||||||||||||||| ||||    
T  47762601 tagtatttgggtgacatagagctgagtgatatttgtgacattgaccaatcacaatgttacaatgtttatgtttctctctctttcacaagcattgtga 47762697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 295 - 389
Target Start/End: Complemental strand, 26186149 - 26186057
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtga 389  Q
    ||||||||||||| ||| ||||||||||||||| ||||| ||||| |  |||| |||||||||||  ||||||||||||||| |||| |||||||    
T  26186149 gtgacatagagttgggtaacattgatgacattggccaatcacaatttcacaatgcttgtgtttct--ctctttcacaagcattgtgacattgtga 26186057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 295 - 382
Target Start/End: Complemental strand, 30861909 - 30861822
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgat 382  Q
    ||||||||||||| | ||| |||| |||||||| ||||| ||||||   |||| |||||||||||||||||||||||||||| |||||    
T  30861909 gtgacatagagttggatgatattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtgat 30861822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 295 - 342
Target Start/End: Complemental strand, 2325115 - 2325068
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgtt 342  Q
    ||||||||||||||||||||||||||||||||||| ||| ||||||||    
T  2325115 gtgacatagagtttggtgacattgatgacattgacaaatcacaatgtt 2325068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 283 - 354
Target Start/End: Complemental strand, 47661989 - 47661918
Alignment:
Q  283 ggtagtatttgtgtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtg 354  Q
    ||||| ||||| ||||||||||||| |||||||||| |||||||||||||| |||||||  |||| ||||||    
T  47661989 ggtagcatttgggtgacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtg 47661918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 320 - 398
Target Start/End: Original strand, 40789207 - 40789285
Alignment:
Q  320 tgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaat 398  Q
    |||||||| ||||| |||||||  ||||  ||||||||||||||||||||||||||| |||| ||||||| ||| ||||    
T  40789207 tgacattggccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattggccaat 40789285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 350 - 399
Target Start/End: Complemental strand, 28694003 - 28693954
Alignment:
Q  350 ttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaatg 399  Q
    ||||||||||||||||||||||| ||| |||||||||||| |||||||||    
T  28694003 ttgtgtttctctctctttcacaaacattgtgatattgtgattggtcaatg 28693954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 294 - 354
Target Start/End: Complemental strand, 53954746 - 53954686
Alignment:
Q  294 tgtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtg 354  Q
    |||||||||||||| |||||||||| |||||||| |||||||||||||  |||| ||||||    
T  53954746 tgtgacatagagttgggtgacattggtgacattgtccaattacaatgtcacaatgcttgtg 53954686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 283 - 354
Target Start/End: Original strand, 23444260 - 23444331
Alignment:
Q  283 ggtagtatttgtgtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtg 354  Q
    ||||| ||||| || |||||||||| |||||||||| |||||||||||||| |||||||  |||| ||||||    
T  23444260 ggtagcatttgggtaacatagagttgggtgacattggtgacattgaccaatcacaatgtcacaatgcttgtg 23444331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 344 - 399
Target Start/End: Original strand, 42375062 - 42375117
Alignment:
Q  344 caatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaatg 399  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||| || ||||||    
T  42375062 caatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgatcaatg 42375117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 344 - 399
Target Start/End: Complemental strand, 50384191 - 50384136
Alignment:
Q  344 caatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaatg 399  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||| ||| |||||    
T  50384191 caatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatg 50384136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 289 - 351
Target Start/End: Complemental strand, 44380071 - 44380009
Alignment:
Q  289 atttgtgtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatactt 351  Q
    ||||| |||||||||||||  ||||||||| ||| |||||||||| |||||||| ||||||||    
T  44380071 atttgggtgacatagagttgagtgacattggtgatattgaccaatcacaatgttacaatactt 44380009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 350 - 399
Target Start/End: Complemental strand, 31430541 - 31430492
Alignment:
Q  350 ttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaatg 399  Q
    |||||||||||||||||||| |||||| |||| ||||||| |||||||||    
T  31430541 ttgtgtttctctctctttcataagcattgtgacattgtgattggtcaatg 31430492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 350 - 399
Target Start/End: Original strand, 52028607 - 52028656
Alignment:
Q  350 ttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaatg 399  Q
    ||||||||||||||||||||||||||| |||| ||||||| ||| |||||    
T  52028607 ttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatg 52028656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 320 - 389
Target Start/End: Complemental strand, 55090106 - 55090037
Alignment:
Q  320 tgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtga 389  Q
    ||||||||  |||| |||||||  |||| ||||||| |||||||||||||||||||| |||| |||||||    
T  55090106 tgacattggtcaatcacaatgtcacaatgcttgtgtctctctctctttcacaagcattgtgacattgtga 55090037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 294 - 354
Target Start/End: Complemental strand, 35682302 - 35682242
Alignment:
Q  294 tgtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtg 354  Q
    |||||||||||||| |||||||||| ||||||||||| || |||||||  |||| ||||||    
T  35682302 tgtgacatagagttaggtgacattggtgacattgaccgatcacaatgtcacaatgcttgtg 35682242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 291 - 326
Target Start/End: Original strand, 25617980 - 25618015
Alignment:
Q  291 ttgtgtgacatagagtttggtgacattgatgacatt 326  Q
    ||||||||||||||||| ||||||||||||||||||    
T  25617980 ttgtgtgacatagagttgggtgacattgatgacatt 25618015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 295 - 354
Target Start/End: Complemental strand, 42375145 - 42375086
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtg 354  Q
    ||||||||||||| |||||||||| ||||||||| |||| |||||||  |||| ||||||    
T  42375145 gtgacatagagttgggtgacattggtgacattgatcaatcacaatgtcacaatgcttgtg 42375086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 320 - 387
Target Start/End: Original strand, 53954638 - 53954705
Alignment:
Q  320 tgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgt 387  Q
    |||||||| ||||| |||||||  |||| || ||||||||| ||||||||||||||| |||| |||||    
T  53954638 tgacattggccaatcacaatgtcacaatgctagtgtttctcactctttcacaagcattgtgacattgt 53954705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 295 - 357
Target Start/End: Complemental strand, 3862681 - 3862619
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgttt 357  Q
    ||||||||||||| |||||||||| |||||||| ||||| ||||||   |||| |||||||||    
T  3862681 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgttt 3862619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 295 - 357
Target Start/End: Complemental strand, 3871438 - 3871376
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgttt 357  Q
    ||||||||||||| |||||||||| |||||||| ||||| ||||||   |||| |||||||||    
T  3871438 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgttt 3871376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 295 - 341
Target Start/End: Complemental strand, 30710035 - 30709989
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgt 341  Q
    ||||||||||||| |||||||||| |||||||| ||||| |||||||    
T  30710035 gtgacatagagttaggtgacattggtgacattggccaatcacaatgt 30709989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 296 - 398
Target Start/End: Original strand, 44379934 - 44380036
Alignment:
Q  296 tgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtc 395  Q
    ||||||||||||  |||||||||  ||||||| ||||||| |||||  |||| |||| |||||||||| ||| | ||| || || | ||||||| |||||    
T  44379934 tgacatagagttgagtgacattggcgacattggccaattataatgtcacaatgcttgcgtttctctctattttataagtattgtaacattgtgattggtc 44380033  T
Q  396 aat 398  Q
    |||    
T  44380034 aat 44380036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 344 - 389
Target Start/End: Complemental strand, 47404671 - 47404626
Alignment:
Q  344 caatacttgtgtttctctctctttcacaagcatggtgatattgtga 389  Q
    |||| |||| ||||||||||||||||||||||| |||| |||||||    
T  47404671 caatgcttgggtttctctctctttcacaagcattgtgacattgtga 47404626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 283 - 320
Target Start/End: Original strand, 54716349 - 54716386
Alignment:
Q  283 ggtagtatttgtgtgacatagagtttggtgacattgat 320  Q
    ||||||||||| ||||||||||||| ||||||||||||    
T  54716349 ggtagtatttgagtgacatagagttgggtgacattgat 54716386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 61; Significance: 9e-26; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 61; E-Value: 9e-26
Query Start/End: Original strand, 291 - 399
Target Start/End: Original strand, 33689175 - 33689283
Alignment:
Q  291 ttgtgtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaa 390  Q
    ||||||||||||||||| |||||||||||||| ||||  |||| |||||||  |||| |||||||||||||||||||||||||||| |||| |||||||     
T  33689175 ttgtgtgacatagagttgggtgacattgatgatattggtcaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgat 33689274  T
Q  391 tggtcaatg 399  Q
    ||| |||||    
T  33689275 tggccaatg 33689283  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 295 - 399
Target Start/End: Complemental strand, 30734537 - 30734433
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggt 394  Q
    ||||||||||||| |||||||||| |||||||| ||||| |||||||   ||||||||||||||||| |||||||||||||| |||| |||||||  |||    
T  30734537 gtgacatagagttaggtgacattggtgacattggccaatcacaatgtcataatacttgtgtttctctatctttcacaagcattgtgacattgtgatcggt 30734438  T
Q  395 caatg 399  Q
    |||||    
T  30734437 caatg 30734433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 288 - 389
Target Start/End: Complemental strand, 43139851 - 43139750
Alignment:
Q  288 tatttgtgtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgt 387  Q
    |||||| ||||||||||||| |||||||||| |||||||| ||||| ||||||   |||| ||||||||||||||||||||||||||||  ||| |||||    
T  43139851 tatttgggtgacatagagttgggtgacattggtgacattggccaataacaatgccacaatgcttgtgtttctctctctttcacaagcattctgacattgt 43139752  T
Q  388 ga 389  Q
    ||    
T  43139751 ga 43139750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 295 - 399
Target Start/End: Complemental strand, 47492182 - 47492078
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggt 394  Q
    ||||||||||||| |||||||||| | | |||| ||||| |||||||  |||| ||||||||||||||| |||||||||||| |||| ||||||| |||     
T  47492182 gtgacatagagttgggtgacattggtcatattggccaatcacaatgtcacaatgcttgtgtttctctctttttcacaagcattgtgacattgtgattggc 47492083  T
Q  395 caatg 399  Q
    |||||    
T  47492082 caatg 47492078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 291 - 381
Target Start/End: Original strand, 55223231 - 55223321
Alignment:
Q  291 ttgtgtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtga 381  Q
    ||||||||||||||||| |||||||||| ||| ||||  |||| ||||| ||  ||||||| |||||||||||||||||||||||| ||||    
T  55223231 ttgtgtgacatagagttaggtgacattggtgatattggtcaatcacaatattagaatacttatgtttctctctctttcacaagcattgtga 55223321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 41752967 - 41753071
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggt 394  Q
    ||||||||||||| |||||||||| |||||||| ||||| ||||||   ||||  |||||||||| |||||||||||||||| |||  ||||||| |||     
T  41752967 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgtttgtgtttctttctctttcacaagcattgtggcattgtgattggc 41753066  T
Q  395 caatg 399  Q
    |||||    
T  41753067 caatg 41753071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 291 - 354
Target Start/End: Original strand, 30734401 - 30734464
Alignment:
Q  291 ttgtgtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtg 354  Q
    |||||||||||||||||||||||||||||||||||||||| || |||||||  |||| ||||||    
T  30734401 ttgtgtgacatagagtttggtgacattgatgacattgaccgatcacaatgtcacaatgcttgtg 30734464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 296 - 389
Target Start/End: Original strand, 50524706 - 50524799
Alignment:
Q  296 tgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtga 389  Q
    ||||||||||||  |||| | ||||||||||||||||| | |||||  ||||  ||||||||||||||||||||||||||| || | |||||||    
T  50524706 tgacatagagttgagtgataatgatgacattgaccaatcataatgtcacaatgtttgtgtttctctctctttcacaagcatcgtaacattgtga 50524799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 295 - 399
Target Start/End: Complemental strand, 51046208 - 51046104
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggt 394  Q
    ||||||||||||| | |||||||| |||||||| ||||| ||||||    ||| |||||||||||||||||||||||| ||| |||| ||| ||| || |    
T  51046208 gtgacatagagttggatgacattggtgacattggccaatcacaatgccataatgcttgtgtttctctctctttcacaaacattgtgacattatgattgat 51046109  T
Q  395 caatg 399  Q
    |||||    
T  51046108 caatg 51046104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 320 - 399
Target Start/End: Complemental strand, 30476584 - 30476505
Alignment:
Q  320 tgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaatg 399  Q
    ||||||||  |||| |||||||  |||| |||||||||||||||||||||||||||| |||| ||||||| ||| |||||    
T  30476584 tgacattggtcaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatg 30476505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 320 - 399
Target Start/End: Complemental strand, 47677365 - 47677286
Alignment:
Q  320 tgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaatg 399  Q
    ||||||||| |||| |||||||  ||||  ||||||||||||||||||||||||||| |||| |||||||  ||||||||    
T  47677365 tgacattgatcaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgatcggtcaatg 47677286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 309 - 372
Target Start/End: Original strand, 50549992 - 50550055
Alignment:
Q  309 ggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaa 372  Q
    ||||| |||| |||||||||||||| ||||| || |||| ||||||||||||||||||||||||    
T  50549992 ggtgatattggtgacattgaccaatcacaatattacaatgcttgtgtttctctctctttcacaa 50550055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 330 - 389
Target Start/End: Complemental strand, 29031814 - 29031755
Alignment:
Q  330 caattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtga 389  Q
    ||||||||||||  ||||  ||||||||||||||||||||||||||| |||| |||||||    
T  29031814 caattacaatgtcacaatgtttgtgtttctctctctttcacaagcattgtgacattgtga 29031755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 320 - 372
Target Start/End: Complemental strand, 39385798 - 39385746
Alignment:
Q  320 tgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaa 372  Q
    |||||||| ||||| |||||||| ||||| |||| ||||||||||||||||||    
T  39385798 tgacattggccaatcacaatgttacaatatttgtatttctctctctttcacaa 39385746  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 320 - 399
Target Start/End: Complemental strand, 1801556 - 1801477
Alignment:
Q  320 tgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaatg 399  Q
    |||||||| ||||| ||||||   ||||  ||||||||||||||||||||||||||| |||  ||||||| ||| |||||    
T  1801556 tgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtggcattgtgattggccaatg 1801477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 296 - 398
Target Start/End: Complemental strand, 30580890 - 30580788
Alignment:
Q  296 tgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtc 395  Q
    ||||||||| || |||||||||  ||||||||  |||| |||||||  || | ||||||||||| ||||||||||||  || |||| ||| ||| |||||    
T  30580890 tgacatagaattgggtgacatttgtgacattggtcaatcacaatgtcacagtgcttgtgtttctatctctttcacaaatattgtgacattatgattggtc 30580791  T
Q  396 aat 398  Q
    |||    
T  30580790 aat 30580788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 295 - 340
Target Start/End: Original strand, 1801449 - 1801494
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatg 340  Q
    ||||||||||||| |||||||||| |||||||| ||||| ||||||    
T  1801449 gtgacatagagttgggtgacattggtgacattggccaatcacaatg 1801494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0586 (Bit Score: 59; Significance: 1e-24; HSPs: 1)
Name: scaffold0586
Description:

Target: scaffold0586; HSP #1
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 291 - 389
Target Start/End: Complemental strand, 7185 - 7088
Alignment:
Q  291 ttgtgtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtga 389  Q
    ||||||||||||||||| |||||||||| |||||||| ||||| |||||||  |||| |||||||||||||||||||||||||||| |||| |||||||    
T  7185 ttgtgtgacatagagtt-ggtgacattggtgacattggccaatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 7088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 2e-23; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 11016872 - 11016976
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggt 394  Q
    ||||||||||||| |||||||||| |||||||| ||||| ||||||   |||| |||||||||||||||||||||||| ||| |||| ||||||| ||||    
T  11016872 gtgacatagagttgggtgacattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaaacattgtgacattgtgattggt 11016971  T
Q  395 caatg 399  Q
    |||||    
T  11016972 caatg 11016976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 295 - 399
Target Start/End: Complemental strand, 41018363 - 41018259
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggt 394  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||||   |||| ||| |||||||||||||||||||||||| | || ||||||| |||     
T  41018363 gtgacatagagttgggtgacattggtgacattgaccaatcacaatgccacaatgcttatgtttctctctctttcacaagcattgggacattgtgattggc 41018264  T
Q  395 caatg 399  Q
    |||||    
T  41018263 caatg 41018259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 295 - 372
Target Start/End: Complemental strand, 45231985 - 45231908
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaa 372  Q
    ||||||||||||| |||||||||| |||||||| ||||| |||||||| |||| ||| ||||||||||||||||||||    
T  45231985 gtgacatagagttgggtgacattggtgacattggccaatcacaatgttacaatgcttttgtttctctctctttcacaa 45231908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 298 - 399
Target Start/End: Original strand, 15027548 - 15027649
Alignment:
Q  298 acatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaa 397  Q
    ||||||||||   |||||||| |||||||||||||| |||||    ||||  ||||||||||||||||||||||||||| |||| ||||||| |||||||    
T  15027548 acatagagttgtttgacattggtgacattgaccaatcacaataccacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattggtcaa 15027647  T
Q  398 tg 399  Q
    ||    
T  15027648 tg 15027649  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 295 - 376
Target Start/End: Original strand, 38975808 - 38975889
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcat 376  Q
    ||||||||||||| |||||||||| | ||||||  |||| ||||||   |||| ||||||||||||||||||||||||||||    
T  38975808 gtgacatagagttgggtgacattggtaacattggtcaatcacaatgccacaatgcttgtgtttctctctctttcacaagcat 38975889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 295 - 399
Target Start/End: Complemental strand, 34854830 - 34854726
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggt 394  Q
    ||||||||||||| |||||||||| ||||||||  |||| ||||||   ||||  |||||||||| |||||||||||||||| |||  ||||||| |||     
T  34854830 gtgacatagagttgggtgacattggtgacattggtcaatcacaatgccacaatgtttgtgtttctatctctttcacaagcattgtggcattgtgattggc 34854731  T
Q  395 caatg 399  Q
    |||||    
T  34854730 caatg 34854726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 289 - 376
Target Start/End: Complemental strand, 30217594 - 30217508
Alignment:
Q  289 atttgtgtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcat 376  Q
    ||||||||||||||||||||| ||||||||||||||||  ||||| ||||| |   |||  || ||||||||||||||||||||||||    
T  30217594 atttgtgtgacatagagtttg-tgacattgatgacattcgccaatcacaatatcaaaatgtttatgtttctctctctttcacaagcat 30217508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 4290548 - 4290652
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggt 394  Q
    ||||||||||||| ||||| |||| ||| ||||  |||| ||||||   |||| || |||||||||||||||||||||| || |||| ||||||| |||     
T  4290548 gtgacatagagttgggtgatattggtgatattggtcaatcacaatgccacaatgctcgtgtttctctctctttcacaagaattgtgacattgtgattggc 4290647  T
Q  395 caatg 399  Q
    |||||    
T  4290648 caatg 4290652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 295 - 341
Target Start/End: Complemental strand, 11017004 - 11016958
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgt 341  Q
    ||||||||||||| |||||||||| |||||||||||||| |||||||    
T  11017004 gtgacatagagttgggtgacattggtgacattgaccaatcacaatgt 11016958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 310 - 376
Target Start/End: Complemental strand, 22764820 - 22764754
Alignment:
Q  310 gtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcat 376  Q
    ||||||||| ||| |||| ||||| |||||||  ||||  |||||||||||||||||||||||||||    
T  22764820 gtgacattggtgatattggccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcat 22764754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 295 - 389
Target Start/End: Complemental strand, 27028928 - 27028834
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtga 389  Q
    |||||||||| || |||||  ||| ||||||||  |||| |||||||  ||||  |||||||||||||||||||| |||||| |||| |||||||    
T  27028928 gtgacatagacttgggtgatgttggtgacattggtcaatcacaatgtcacaatgtttgtgtttctctctctttcagaagcattgtgacattgtga 27028834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 320 - 398
Target Start/End: Original strand, 42628323 - 42628401
Alignment:
Q  320 tgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaat 398  Q
    |||||||||||||| ||||||   |||| ||| |||||||||||||||||||||||| | || ||||||| ||| ||||    
T  42628323 tgacattgaccaatcacaatgccacaatgcttatgtttctctctctttcacaagcattgggacattgtgattggccaat 42628401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 320 - 373
Target Start/End: Original strand, 10419486 - 10419539
Alignment:
Q  320 tgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaag 373  Q
    ||||||||  |||| | |||||| ||||||||||||||||||||||||||||||    
T  10419486 tgacattggtcaatcataatgttacaatacttgtgtttctctctctttcacaag 10419539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 295 - 354
Target Start/End: Complemental strand, 42628430 - 42628371
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtg 354  Q
    ||||||||||||| |||||||||| ||| |||| ||||| ||||||| ||||| ||||||    
T  42628430 gtgacatagagttgggtgacattggtgatattggccaatcacaatgtcccaatgcttgtg 42628371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 298 - 340
Target Start/End: Complemental strand, 48000869 - 48000827
Alignment:
Q  298 acatagagtttggtgacattgatgacattgaccaattacaatg 340  Q
    |||||||||| |||||||||| |||||||||||||| ||||||    
T  48000869 acatagagttgggtgacattggtgacattgaccaatcacaatg 48000827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 320 - 389
Target Start/End: Complemental strand, 7672021 - 7671952
Alignment:
Q  320 tgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtga 389  Q
    |||||||| ||||| ||||||   ||||  ||||||||||||||||||||||||||| |||  |||||||    
T  7672021 tgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtggcattgtga 7671952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 295 - 340
Target Start/End: Complemental strand, 38975940 - 38975895
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatg 340  Q
    ||||||||||||| |||||||||| ||||||||| |||||| ||||    
T  38975940 gtgacatagagttaggtgacattggtgacattgatcaattataatg 38975895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 53; Significance: 5e-21; HSPs: 22)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 295 - 399
Target Start/End: Original strand, 16514427 - 16514531
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggt 394  Q
    ||||||||||||| |||||||||| |||||||| ||||| || |||    ||| |||||||||||||||||||||||||||| |||| ||||||| ||||    
T  16514427 gtgacatagagttgggtgacattggtgacattggccaatcactatgccataatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggt 16514526  T
Q  395 caatg 399  Q
    |||||    
T  16514527 caatg 16514531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 8e-17
Query Start/End: Original strand, 295 - 376
Target Start/End: Complemental strand, 29508826 - 29508745
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcat 376  Q
    ||||||||||||| ||||| |||| |||||||| ||||| ||||||   |||| ||||||||||||||||||||||||||||    
T  29508826 gtgacatagagttgggtgatattggtgacattggccaatcacaatgccgcaatgcttgtgtttctctctctttcacaagcat 29508745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 311 - 398
Target Start/End: Original strand, 6721970 - 6722057
Alignment:
Q  311 tgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaat 398  Q
    |||||||| |||||||||||||| ||||| |  |||| |||||||||||||||||||||||| ||| |||| ||||||| ||| ||||    
T  6721970 tgacattggtgacattgaccaatcacaatatcacaatgcttgtgtttctctctctttcacaaacattgtgacattgtgattggccaat 6722057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 291 - 354
Target Start/End: Original strand, 14470591 - 14470654
Alignment:
Q  291 ttgtgtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtg 354  Q
    ||||||||||||||||| |||||||||| |||||||||||||| |||||||| |||| ||||||    
T  14470591 ttgtgtgacatagagttgggtgacattggtgacattgaccaatcacaatgttgcaatgcttgtg 14470654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 310 - 387
Target Start/End: Original strand, 8534164 - 8534241
Alignment:
Q  310 gtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgt 387  Q
    ||||||||||||||||||| ||||||||||||   |||| |||||||||||||| ||||||||| || |||| |||||    
T  8534164 gtgacattgatgacattgatcaattacaatgtaaaaatatttgtgtttctctctatttcacaagaattgtgacattgt 8534241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 291 - 338
Target Start/End: Complemental strand, 45213939 - 45213892
Alignment:
Q  291 ttgtgtgacatagagtttggtgacattgatgacattgaccaattacaa 338  Q
    ||||||||||||||||| ||||||||||||||||||||||||| ||||    
T  45213939 ttgtgtgacatagagttgggtgacattgatgacattgaccaatcacaa 45213892  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 309 - 399
Target Start/End: Original strand, 15011297 - 15011387
Alignment:
Q  309 ggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaatg 399  Q
    |||||||||| ||| |||| ||||| ||||||   ||||  ||||||||||||||||||||||||||| |||| ||||||| ||| |||||    
T  15011297 ggtgacattggtgatattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatg 15011387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 320 - 381
Target Start/End: Original strand, 38933615 - 38933676
Alignment:
Q  320 tgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtga 381  Q
    |||||||||||||| ||||||   |||| |||||||||||||||||||||||||||| ||||    
T  38933615 tgacattgaccaatcacaatgccacaatgcttgtgtttctctctctttcacaagcattgtga 38933676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 283 - 351
Target Start/End: Complemental strand, 14892407 - 14892339
Alignment:
Q  283 ggtagtatttgtgtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatactt 351  Q
    ||||| ||||| ||||||||||||| | |||||||| ||||||||| |||| |||||||| ||||||||    
T  14892407 ggtagcatttgggtgacatagagttggatgacattggtgacattgatcaatcacaatgttacaatactt 14892339  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 320 - 399
Target Start/End: Original strand, 2828612 - 2828691
Alignment:
Q  320 tgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaatg 399  Q
    |||||||| ||||| |||||||   ||| ||||||||||||||||||||| |||||| |||| ||||||| ||| |||||    
T  2828612 tgacattggccaatcacaatgtcaaaatgcttgtgtttctctctctttcagaagcattgtgacattgtgattggccaatg 2828691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 330 - 389
Target Start/End: Complemental strand, 14229453 - 14229394
Alignment:
Q  330 caattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtga 389  Q
    |||| |||||||  |||| |||||||||||||||||||||||||||| |||| |||||||    
T  14229453 caatcacaatgtcacaatgcttgtgtttctctctctttcacaagcattgtgacattgtga 14229394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 291 - 389
Target Start/End: Original strand, 24115919 - 24116017
Alignment:
Q  291 ttgtgtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtga 389  Q
    |||||||| ||||||||  || |||||| | |||||| ||||| |||||||| |||| | |||||||| | ||||||||||||||| | || |||||||    
T  24115919 ttgtgtgagatagagttgagtcacattggtaacattggccaatcacaatgttacaatgcctgtgtttcacactctttcacaagcattgcgacattgtga 24116017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 350 - 399
Target Start/End: Original strand, 37961764 - 37961813
Alignment:
Q  350 ttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaatg 399  Q
    ||||||||||||||||||||||||||| |||  ||||||| |||||||||    
T  37961764 ttgtgtttctctctctttcacaagcattgtggcattgtgattggtcaatg 37961813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 303 - 399
Target Start/End: Complemental strand, 37762128 - 37762032
Alignment:
Q  303 gagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaatg 399  Q
    |||||| |||| |||| |||||| |  |||| ||||| |  |||| ||||||||||| |||||||||||||||| | || ||||||| |||||||||    
T  37762128 gagtttagtgatattggtgacatgggtcaatcacaatatcacaatgcttgtgtttctttctctttcacaagcattgcgacattgtgattggtcaatg 37762032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 320 - 399
Target Start/End: Complemental strand, 6217334 - 6217255
Alignment:
Q  320 tgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaatg 399  Q
    |||||||| ||||| ||||||   ||||  ||||||||||||||||||||||||||| |||  ||||||| ||| |||||    
T  6217334 tgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtggcattgtgattggccaatg 6217255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 295 - 354
Target Start/End: Complemental strand, 16514559 - 16514500
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtg 354  Q
    ||||||||||||| ||||| |||| |||||||||||||| |||||||  |||| ||||||    
T  16514559 gtgacatagagttgggtgagattggtgacattgaccaatcacaatgtcacaatgcttgtg 16514500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 295 - 338
Target Start/End: Original strand, 29508693 - 29508736
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaa 338  Q
    ||||||||||||| |||||||||| |||||||||||||| ||||    
T  29508693 gtgacatagagttgggtgacattggtgacattgaccaatcacaa 29508736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 329 - 399
Target Start/End: Complemental strand, 14470693 - 14470623
Alignment:
Q  329 ccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaatg 399  Q
    ||||| |||||||  ||||  ||||||||||||||||||||||||||| |  | ||||||| |||||||||    
T  14470693 ccaatcacaatgtcacaatgtttgtgtttctctctctttcacaagcattgcaacattgtgattggtcaatg 14470623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 320 - 381
Target Start/End: Original strand, 2893991 - 2894052
Alignment:
Q  320 tgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtga 381  Q
    |||||||| ||||| ||||| |  |||| ||||| |||||||||||||||||||||| ||||    
T  2893991 tgacattggccaatcacaatctcacaatgcttgtatttctctctctttcacaagcattgtga 2894052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 295 - 340
Target Start/End: Original strand, 6217227 - 6217272
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatg 340  Q
    ||||||||||||| |||||||||| |||||||| ||||| ||||||    
T  6217227 gtgacatagagttgggtgacattggtgacattggccaatcacaatg 6217272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 295 - 376
Target Start/End: Complemental strand, 9173116 - 9173035
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcat 376  Q
    ||||||||||||| |||||||||| ||| |||| ||||| ||||||   |||| ||||| ||||||| ||||| | ||||||    
T  9173116 gtgacatagagttgggtgacattggtgatattggccaatcacaatgccacaatgcttgtatttctctttcttttataagcat 9173035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 320 - 389
Target Start/End: Complemental strand, 29925680 - 29925611
Alignment:
Q  320 tgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtga 389  Q
    |||||||| ||||| ||||||   ||||  |||||||||||||||||||||||||||  ||| |||||||    
T  29925680 tgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattctgacattgtga 29925611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 295 - 390
Target Start/End: Original strand, 24587464 - 24587559
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaa 390  Q
    ||||||||||||| |||||||||  ||||||||  |||| |||||||  |||| |||||||||||| || |||||||||||| |||| ||||||||    
T  24587464 gtgacatagagttgggtgacattagtgacattggtcaatcacaatgtcacaatgcttgtgtttctcgctttttcacaagcattgtgacattgtgaa 24587559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 291 - 389
Target Start/End: Original strand, 17750902 - 17750999
Alignment:
Q  291 ttgtgtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtga 389  Q
    ||||||||||||||||| | |||||||| ||||||||  |||| |||||||  ||||  |||| ||| |||||||||||||||||| |||| |||||||    
T  17750902 ttgtgtgacatagagtt-gatgacattggtgacattggtcaatcacaatgtcacaatgtttgtatttatctctctttcacaagcattgtgacattgtga 17750999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 288 - 389
Target Start/End: Complemental strand, 551307 - 551206
Alignment:
Q  288 tatttgtgtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgt 387  Q
    |||||| |||||||||| || | ||| |||| |||||||| ||||| ||||||   |||| |||||||||||||||||||||||| ||| |||  |||||    
T  551307 tatttgggtgacatagaattggatgatattggtgacattggccaatcacaatgccacaatgcttgtgtttctctctctttcacaaacattgtggcattgt 551208  T
Q  388 ga 389  Q
    ||    
T  551207 ga 551206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 344 - 389
Target Start/End: Original strand, 13043509 - 13043554
Alignment:
Q  344 caatacttgtgtttctctctctttcacaagcatggtgatattgtga 389  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||    
T  13043509 caatgcttgtgtttctctctctttcacaagcattgtgatattgtga 13043554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 344 - 399
Target Start/End: Original strand, 12343152 - 12343207
Alignment:
Q  344 caatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaatg 399  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||| ||| |||||    
T  12343152 caatgcttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatg 12343207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 320 - 399
Target Start/End: Complemental strand, 24618711 - 24618632
Alignment:
Q  320 tgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaatg 399  Q
    |||| ||||||||| |||||||  |||| ||||||||||||||||||||| ||||||  ||| ||||||| || ||||||    
T  24618711 tgacgttgaccaatcacaatgtcacaatgcttgtgtttctctctctttcataagcattatgacattgtgattgatcaatg 24618632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 320 - 377
Target Start/End: Original strand, 31654333 - 31654390
Alignment:
Q  320 tgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatg 377  Q
    |||||||| ||||| |||||||  |||| |||||||||||||||||||||||| ||||    
T  31654333 tgacattggccaatcacaatgtcacaatgcttgtgtttctctctctttcacaaacatg 31654390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 320 - 399
Target Start/End: Complemental strand, 10521959 - 10521880
Alignment:
Q  320 tgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaatg 399  Q
    ||||||||  |||| |||||||   ||| ||||||||||||||||||||| |||||| |||| ||||||| ||| |||||    
T  10521959 tgacattggtcaatcacaatgtcataatgcttgtgtttctctctctttcataagcattgtgacattgtgattggccaatg 10521880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 291 - 354
Target Start/End: Complemental strand, 17751041 - 17750978
Alignment:
Q  291 ttgtgtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtg 354  Q
    ||||||||||||||||| ||||| ||||||||||||| || || |||||||  |||| ||||||    
T  17751041 ttgtgtgacatagagttgggtgatattgatgacattggccgatcacaatgtcacaatgcttgtg 17750978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 295 - 341
Target Start/End: Original strand, 24618604 - 24618650
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgt 341  Q
    ||||||||||||| |||||||||| ||||||||| |||| |||||||    
T  24618604 gtgacatagagttgggtgacattggtgacattgatcaatcacaatgt 24618650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 295 - 354
Target Start/End: Original strand, 49706 - 49765
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtg 354  Q
    ||||||||||||| ||||||||||||||||||||||||| |||||||  |||| ||||||    
T  49706 gtgacatagagttgggtgacattgatgacattgaccaatcacaatgtcacaatgcttgtg 49765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 320 - 399
Target Start/End: Complemental strand, 49813 - 49734
Alignment:
Q  320 tgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaatg 399  Q
    |||||||| ||||| ||||||   |||| ||||||||||||| |||||||||||||| |||| ||||||| |||||||||    
T  49813 tgacattggccaatcacaatgccacaatgcttgtgtttctctttctttcacaagcattgtgacattgtgattggtcaatg 49734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0180 (Bit Score: 38; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0180
Description:

Target: scaffold0180; HSP #1
Raw Score: 38; E-Value: 0.000000000005
Query Start/End: Original strand, 289 - 354
Target Start/End: Original strand, 19119 - 19184
Alignment:
Q  289 atttgtgtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtg 354  Q
    ||||||||||||||||||| |||||||||||||| ||||| |||| |||||||  |||| ||||||    
T  19119 atttgtgtgacatagagttgggtgacattgatgatattgatcaatcacaatgtcacaatgcttgtg 19184  T

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Target: scaffold1033 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold1033
Description:

Target: scaffold1033; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 344 - 399
Target Start/End: Original strand, 2265 - 2320
Alignment:
Q  344 caatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaatg 399  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||| || ||||||    
T  2265 caatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgatcaatg 2320  T

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Target: scaffold1029 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold1029
Description:

Target: scaffold1029; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 344 - 399
Target Start/End: Original strand, 2265 - 2320
Alignment:
Q  344 caatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaatg 399  Q
    |||| |||||||||||||||||||||||||||| |||| ||||||| || ||||||    
T  2265 caatgcttgtgtttctctctctttcacaagcattgtgacattgtgattgatcaatg 2320  T

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Target: scaffold0161 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0161
Description:

Target: scaffold0161; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 295 - 398
Target Start/End: Complemental strand, 27355 - 27252
Alignment:
Q  295 gtgacatagagtttggtgacattgatgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggt 394  Q
    |||| |||||||| |||||||||| ||| |||| ||||| ||||||   |||| ||| ||||||||||||||||||||| ||  ||| ||||||| |||     
T  27355 gtgatatagagttgggtgacattggtgatattggccaatcacaatgccacaatgcttctgtttctctctctttcacaagaattatgacattgtgattggc 27256  T
Q  395 caat 398  Q
    ||||    
T  27255 caat 27252  T

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Target: scaffold0047 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: scaffold0047
Description:

Target: scaffold0047; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 320 - 399
Target Start/End: Original strand, 63785 - 63864
Alignment:
Q  320 tgacattgaccaattacaatgttccaatacttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaatg 399  Q
    |||||||| ||||| ||||||   ||||  ||||||||||||||||||||||||||| |||| ||||||| ||| |||||    
T  63785 tgacattggccaatcacaatgccacaatgtttgtgtttctctctctttcacaagcattgtgacattgtgattggccaatg 63864  T

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Target: scaffold0481 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0481
Description:

Target: scaffold0481; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 350 - 398
Target Start/End: Complemental strand, 2967 - 2919
Alignment:
Q  350 ttgtgtttctctctctttcacaagcatggtgatattgtgaatggtcaat 398  Q
    ||||||||||||||||||||||| ||| |||| ||||||| ||||||||    
T  2967 ttgtgtttctctctctttcacaaacattgtgacattgtgattggtcaat 2919  T

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