View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0199_low_2 (Length: 491)

Name: NF0199_low_2
Description: NF0199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0199_low_2
NF0199_low_2
[»] chr3 (10 HSPs)
chr3 (30-477)||(49445291-49445738)
chr3 (142-236)||(49415800-49415894)
chr3 (375-437)||(49426476-49426538)
chr3 (377-431)||(49416040-49416094)
chr3 (283-431)||(43359917-43360065)
chr3 (374-424)||(43362339-43362389)
chr3 (394-436)||(49437825-49437867)
chr3 (287-344)||(8312222-8312279)
chr3 (287-352)||(8316678-8316743)
chr3 (375-436)||(49432718-49432779)
[»] chr7 (5 HSPs)
chr7 (395-436)||(12635966-12636007)
chr7 (374-435)||(1333159-1333220)
chr7 (389-437)||(11378461-11378509)
chr7 (375-437)||(32247164-32247226)
chr7 (389-437)||(11375285-11375333)
[»] chr2 (3 HSPs)
chr2 (287-352)||(1019176-1019241)
chr2 (287-345)||(989595-989653)
chr2 (287-344)||(1024755-1024812)
[»] chr1 (2 HSPs)
chr1 (375-436)||(1965595-1965656)
chr1 (399-436)||(41662531-41662568)
[»] scaffold0244 (1 HSPs)
scaffold0244 (375-431)||(5720-5776)


Alignment Details
Target: chr3 (Bit Score: 436; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 30 - 477
Target Start/End: Complemental strand, 49445738 - 49445291
Alignment:
Q  30 gtatcgccctcatgaaaagattcccatctttcataatttggcccacttgaagcttctctctctcaactataactggaagctgttagtacatgtgttgtgt 129  Q
    |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49445738 gtatcgccctcatgacgagattcccatctttcataatttggcccacttgaagcttctctctctcaactataactggaagctgttagtacatgtgttgtgt 49445639  T
Q  130 cactgcccaaagcttcaaaaacttgaccttagtgaggtttgtttagtttagggattgtatgtgatttattatttcctaagatgcctttgtggtttgttta 229  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49445638 cactgcccaaagcttcaaaaacttgaccttagtgaggtttgtttagtttagggattgtatgtgatttattatttcctaagatgcctttgtggtttgttta 49445539  T
Q  230 attttattttatcattattaataggccaccgaagattgtattatacctgatgtccaggaaaattgggttgacccagagtttgttccacactgcatttcat 329  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49445538 attttattttatcattattaataggccaccgaagattgtatgatacctgatgtccaggaaaattgggttgacccagagtttgttccacactgcatttcat 49445439  T
Q  330 taaaccttagaacttgtactcttttgaggttcaaaggcctgcatggtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccat 429  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  49445438 taaaccttagaacttgtactcttttgaggttcaaaggcctgcatggtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccat 49445339  T
Q  430 gacaatcactggaccttcgccttgtgattatcttcttcctcccgggcc 477  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||    
T  49445338 gacaatcactggaccttcgccttgtgattatcttcttcctcccgggcc 49445291  T

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Target: chr3; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 142 - 236
Target Start/End: Original strand, 49415800 - 49415894
Alignment:
Q  142 cttcaaaaacttgaccttagtgaggtttgtttagtttagggattgtatgtgatttattatttcctaagatgcctttgtggtttgtttaattttat 236  Q
    ||||||||  |||| |||||||||||||||| ||||||||| |  ||| |||||||| ||||| ||| ||||||||||| ||| ||| |||||||    
T  49415800 cttcaaaatgttgagcttagtgaggtttgttaagtttaggggtcatatctgatttatcatttcttaacatgcctttgtgatttattttattttat 49415894  T

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Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 375 - 437
Target Start/End: Complemental strand, 49426538 - 49426476
Alignment:
Q  375 gtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaatca 437  Q
    ||||||||||  |||||||| ||||| | |||||||||||||||||||||||||||| |||||    
T  49426538 gtgagcttctattggcaaaacatattctaaagaatgcaagagttttgcaaaccatgaaaatca 49426476  T

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Target: chr3; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 377 - 431
Target Start/End: Original strand, 49416040 - 49416094
Alignment:
Q  377 gagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatga 431  Q
    ||||||||  |||||| ||| |||||||||||||| |||||||||||||||||||    
T  49416040 gagcttctattggcaagatacattttgaagaatgctagagttttgcaaaccatga 49416094  T

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Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 283 - 431
Target Start/End: Original strand, 43359917 - 43360065
Alignment:
Q  283 ccaggaaaattgggttgacccagagtttgttccacactgcatttcattaaaccttagaacttgtactcttttgaggttcaaaggcctgcatggtgagctt 382  Q
    ||||||||||||||| ||||| |  | |||||| |  |||||||||||| |||||| |||||| || |||| |   |||| |||||  ||||||||| ||    
T  43359917 ccaggaaaattgggtagaccctgcatctgttccgcggtgcatttcattacaccttaaaacttgcacactttggtacttcagaggccaacatggtgaggtt 43360016  T
Q  383 ctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatga 431  Q
    | | | |||| ||| ||| | || |||||||||||||||||||| ||||    
T  43360017 cagttagcaacatacattcttaataatgcaagagttttgcaaactatga 43360065  T

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Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 374 - 424
Target Start/End: Original strand, 43362339 - 43362389
Alignment:
Q  374 ggtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaa 424  Q
    ||||||||| |  |||||| ||||||| |||||||||||||||||||||||    
T  43362339 ggtgagcttttattggcaatatatattgtgaagaatgcaagagttttgcaa 43362389  T

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Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 394 - 436
Target Start/End: Complemental strand, 49437867 - 49437825
Alignment:
Q  394 atatattttgaagaatgcaagagttttgcaaaccatgacaatc 436  Q
    ||||||| ||||||||||||||||||||||||| ||| |||||    
T  49437867 atatattctgaagaatgcaagagttttgcaaacaatgtcaatc 49437825  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 344
Target Start/End: Original strand, 8312222 - 8312279
Alignment:
Q  287 gaaaattgggttgacccagagtttgttccacactgcatttcattaaaccttagaactt 344  Q
    ||||||||||| |||||||| ||||||||||| ||| ||| || | ||||||||||||    
T  8312222 gaaaattgggtggacccagaatttgttccacaatgccttttatcacaccttagaactt 8312279  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 352
Target Start/End: Original strand, 8316678 - 8316743
Alignment:
Q  287 gaaaattgggttgacccagagtttgttccacactgcatttcattaaaccttagaacttgtactctt 352  Q
    ||||||||||| || ||||| ||||||||||| ||| ||| || | ||||||||||||| ||||||    
T  8316678 gaaaattgggtggaaccagaatttgttccacaatgccttttatcacaccttagaacttgcactctt 8316743  T

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Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 436
Target Start/End: Complemental strand, 49432779 - 49432718
Alignment:
Q  375 gtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaatc 436  Q
    ||||||||||  |||||| ||||||| | |||||| ||||||||||| ||||||||| ||||    
T  49432779 gtgagcttctattggcaagatatattctaaagaattcaagagttttgtaaaccatgaaaatc 49432718  T

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Target: chr7 (Bit Score: 38; Significance: 0.000000000003; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 395 - 436
Target Start/End: Original strand, 12635966 - 12636007
Alignment:
Q  395 tatattttgaagaatgcaagagttttgcaaaccatgacaatc 436  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  12635966 tatattttgaagaatgcaagagttttacaaaccatgacaatc 12636007  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 374 - 435
Target Start/End: Complemental strand, 1333220 - 1333159
Alignment:
Q  374 ggtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaat 435  Q
    |||||||||||| | ||||  ||||| ||||||||||| |||||||| ||||||||||||||    
T  1333220 ggtgagcttctgctagcaaggtatatcttgaagaatgcgagagttttacaaaccatgacaat 1333159  T

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Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 389 - 437
Target Start/End: Original strand, 11378461 - 11378509
Alignment:
Q  389 gcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaatca 437  Q
    ||||||||||||||||||||||||| ||| ||||| || ||||||||||    
T  11378461 gcaaaatatattttgaagaatgcaaaagtattgcagacaatgacaatca 11378509  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 375 - 437
Target Start/End: Original strand, 32247164 - 32247226
Alignment:
Q  375 gtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaatca 437  Q
    |||||||| || | ||||||||||||||||||||||||||| | || |||| ||||| |||||    
T  32247164 gtgagcttatgttagcaaaatatattttgaagaatgcaagaatgttacaaatcatgaaaatca 32247226  T

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Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 389 - 437
Target Start/End: Original strand, 11375285 - 11375333
Alignment:
Q  389 gcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaatca 437  Q
    ||||| ||||||||||||||||||| ||| ||||| | |||||||||||    
T  11375285 gcaaagtatattttgaagaatgcaaaagtattgcagatcatgacaatca 11375333  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000007; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 287 - 352
Target Start/End: Complemental strand, 1019241 - 1019176
Alignment:
Q  287 gaaaattgggttgacccagagtttgttccacactgcatttcattaaaccttagaacttgtactctt 352  Q
    ||||||||||| |||||||| ||||||||||| ||| ||| || | ||||||||||||| ||||||    
T  1019241 gaaaattgggtggacccagaatttgttccacaatgccttttatcacaccttagaacttgcactctt 1019176  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 287 - 345
Target Start/End: Complemental strand, 989653 - 989595
Alignment:
Q  287 gaaaattgggttgacccagagtttgttccacactgcatttcattaaaccttagaacttg 345  Q
    ||||||||||| || ||||| ||||||||||| ||| |||||| | |||||||||||||    
T  989653 gaaaattgggtggaaccagaatttgttccacaatgcctttcatcataccttagaacttg 989595  T

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Target: chr2; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 287 - 344
Target Start/End: Complemental strand, 1024812 - 1024755
Alignment:
Q  287 gaaaattgggttgacccagagtttgttccacactgcatttcattaaaccttagaactt 344  Q
    ||||||||||| |||||||| ||||||||||| ||| ||| || | ||||||||||||    
T  1024812 gaaaattgggtggacccagaatttgttccacaatgctttttatcacaccttagaactt 1024755  T

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Target: chr1 (Bit Score: 30; Significance: 0.0000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 375 - 436
Target Start/End: Original strand, 1965595 - 1965656
Alignment:
Q  375 gtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatgacaatc 436  Q
    ||||||||||  |||||| ||||||| | |||||| ||| ||||||||||||||||| ||||    
T  1965595 gtgagcttcttttggcaagatatattctaaagaatacaaaagttttgcaaaccatgaaaatc 1965656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 399 - 436
Target Start/End: Complemental strand, 41662568 - 41662531
Alignment:
Q  399 ttttgaagaatgcaagagttttgcaaaccatgacaatc 436  Q
    |||||||||||||||||||||| |||||||||| ||||    
T  41662568 ttttgaagaatgcaagagttttacaaaccatgaaaatc 41662531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0244 (Bit Score: 29; Significance: 0.0000007; HSPs: 1)
Name: scaffold0244
Description:

Target: scaffold0244; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 375 - 431
Target Start/End: Complemental strand, 5776 - 5720
Alignment:
Q  375 gtgagcttctgatggcaaaatatattttgaagaatgcaagagttttgcaaaccatga 431  Q
    ||||||||| | | ||||||||||||||||||||| ||||| ||||  |||||||||    
T  5776 gtgagcttcagttagcaaaatatattttgaagaattcaagaattttagaaaccatga 5720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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