View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0199_low_7 (Length: 336)
Name: NF0199_low_7
Description: NF0199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0199_low_7 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 29 - 314
Target Start/End: Original strand, 53637554 - 53637839
Alignment:
| Q |
29 |
aaaaggaaagaagcaatgtagaataataattggtttggatgttggagctagaatgcagaaatgatcgtata--tatacacatgattaaagaggtaagaga |
126 |
Q |
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| T |
53637554 |
aaaaggaaagaagcaatgtagaataataattggtttggatgttggagctagaatgcagaaatgatcgtatatatatacacatgattaaagaggtaagaga |
53637653 |
T |
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| Q |
127 |
agattacaaagacaagggaagatatgacacaggctgtgaaattccgccatcgccacgtgaatcattagcgcctggccgcatatattatgttacaataatt |
226 |
Q |
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| T |
53637654 |
agattacaaagacaagggaagatatgacacaggctgtgaaattccgccatcgccacgtgaatcattagcgtctggccgc--atattatgttacaataatt |
53637751 |
T |
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| Q |
227 |
ttttaatactacttgcaccttcaataacatcaagcttgtctaatgaataaatctgactatagaaatttagttttaactattaaatcaa |
314 |
Q |
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| T |
53637752 |
ttttaatactacttgcaccttcaataacatcaagcttgtctaatgaataaatctgactatagaaatttagttttaactattacatcaa |
53637839 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 54 - 134
Target Start/End: Original strand, 53652206 - 53652289
Alignment:
| Q |
54 |
ataattggtttggatgttggagctagaatgcagaaatgatcgtatatatacacatgattaa---agaggtaagagaagattaca |
134 |
Q |
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| T |
53652206 |
ataactggtttggatgctggagctagaatgaacaaacgatgatatatatacacatgattattatacaggtaagagaagattaca |
53652289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 144 - 209
Target Start/End: Original strand, 53652314 - 53652379
Alignment:
| Q |
144 |
gaagatatgacacaggctgtgaaattccgccatcgccacgtgaatcattagcgcctggccgcatat |
209 |
Q |
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| T |
53652314 |
gaagatatcacacaggctgtgaaaatccgccagcgccacgtgaagcatgaccgtttggccgcatat |
53652379 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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