View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0199_low_8 (Length: 284)
Name: NF0199_low_8
Description: NF0199
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0199_low_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 30 - 273
Target Start/End: Original strand, 44730263 - 44730522
Alignment:
| Q |
30 |
gaaatgagatatggtttcccataagaggatattgttatgagtcaatacaaggtgttgatgt----------------aaaacaaggtaatgtatgcaatg |
113 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
44730263 |
gaaatgagatatggtttcccataagaggatattgttatgagccaatacaaggtgttgatgtgagacaaaaggtgtgtaaaacaaggtaatgtatgcaatg |
44730362 |
T |
|
| Q |
114 |
agaagtgatgtttgttaaaccgctccatcttgtgaagaatataatggtggacttggtagttttgatttggctcggttgttggctatgacatgagttacaa |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44730363 |
agaagtgatgtttgttaaaccgctccatcttgtgaagaatataatggtggacttggtagttttgatttggctcggttgttggctatgacatgagttacaa |
44730462 |
T |
|
| Q |
214 |
ctacgacaagtacactacttaaccaatttttgactttataattggatcagtatccttcat |
273 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44730463 |
ctacaacaagtacactacttaaccaatttttgactttataattggatcagtatccttcat |
44730522 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1352 times since January 2019
Visitors: 2391