View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0200-Insertion-1 (Length: 171)
Name: NF0200-Insertion-1
Description: NF0200
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0200-Insertion-1 |
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| [»] chr4 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 166; Significance: 4e-89; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 166; E-Value: 4e-89
Query Start/End: Original strand, 6 - 171
Target Start/End: Original strand, 552062 - 552227
Alignment:
| Q |
6 |
cagtcccaacaacaagctgtccataaaaagtgacaatcatacaaatacccccaaaactcagcattggtttgaaaccaaaacatcaattctaacatattac |
105 |
Q |
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| T |
552062 |
cagtcccaacaacaagctgtccataaaaagtgacaatcatacaaatacccccaaaactcagcattggtttgaaaccaaaacatcaattctaacatattac |
552161 |
T |
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| Q |
106 |
caagtctcaaatttatcatgagccattttttactcaaatccctcattttccatactttgtagtaat |
171 |
Q |
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| T |
552162 |
caagtctcaaatttatcatgagccattttttactcaaatccctcattttccatactttgtagtaat |
552227 |
T |
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