View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0200_1D_high_19 (Length: 218)
Name: NF0200_1D_high_19
Description: NF0200_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0200_1D_high_19 |
 | |
|
| [»] scaffold0212 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0212 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0212
Description:
Target: scaffold0212; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 17 - 208
Target Start/End: Original strand, 13845 - 14036
Alignment:
| Q |
17 |
acatcagcagatgttacaataatacgtagatgagttttggctggtacaaccactctattgtccacttctaataaacgtgattgacccaattctagatcat |
116 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13845 |
acatcagcagatgttacaataatacgtagatgagttttggctggtacaaccactctattgtccacttctaataaacgtgattgacccaattctagatcat |
13944 |
T |
|
| Q |
117 |
cttccggaatcgtataactgtcaaaagtgagtgactgttcatcggaactgttatagtctgaatactcataagtccgataccattgatgtcca |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
13945 |
cttccggaatcgtataactgtcaaaagtgagtgactgttcatcggaactgttatagtctgaatactcataagtccgataccattgatgtcca |
14036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 86; Significance: 3e-41; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 17 - 150
Target Start/End: Complemental strand, 1677661 - 1677528
Alignment:
| Q |
17 |
acatcagcagatgttacaataatacgtagatgagttttggctggtacaaccactctattgtccacttctaataaacgtgattgacccaattctagatcat |
116 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| ||||||||| |||| |||||||| |
|
|
| T |
1677661 |
acatcaacaaatgttacaataatacgtagatgagttttggctggtacaatcactctattgtccaattctaataaacatgattgacctaattatagatcat |
1677562 |
T |
|
| Q |
117 |
cttccggaatcgtataactgtcaaaagtgagtga |
150 |
Q |
| |
|
|||| |||||||||| | |||||||||||||| |
|
|
| T |
1677561 |
tttccaaaatcgtataagtttcaaaagtgagtga |
1677528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 47; Significance: 5e-18; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 162 - 208
Target Start/End: Original strand, 34584443 - 34584489
Alignment:
| Q |
162 |
aactgttatagtctgaatactcataagtccgataccattgatgtcca |
208 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34584443 |
aactgttatagtctgaatactcataagtccgataccattgatgtcca |
34584489 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2180 times since January 2019
Visitors: 2399