View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0200_1D_high_2 (Length: 674)

Name: NF0200_1D_high_2
Description: NF0200_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0200_1D_high_2
NF0200_1D_high_2
[»] chr6 (1 HSPs)
chr6 (17-674)||(23333190-23333847)


Alignment Details
Target: chr6 (Bit Score: 614; Significance: 0; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 614; E-Value: 0
Query Start/End: Original strand, 17 - 674
Target Start/End: Complemental strand, 23333847 - 23333190
Alignment:
Q  17 ggacatcacgaagttgaccgataaaattgtgtgccagaatgcagctgaagcagtactcccccaaagaggttgataagtttgttttatgtaattttttgct 116  Q
    |||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  23333847 ggacataacgaagttgaccgataaaattgtgtgccggaatgcagctgaagcagtactccccccaagaggttgataagtttgttttatgtaattttttgct 23333748  T
Q  117 gttttgatatattgtgtcatgatttaccaggaaaaatgtacacattgtcgttacctcaggaactgttgttcgtgttgctgatgagctttcccttcaagag 216  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||    
T  23333747 gttttgatatattgtgtcatgatttaccaggaaaaatgtacacattgtcgttgcctcaggaactgttgttcgtgttgctgatgagctttcccttcaagag 23333648  T
Q  217 atgcgattgctgaatacatattatgcagagcttgagaccgcaactgtaagtgattttttatatgtcaactgctttctgatgaaacaatcattataatatg 316  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  23333647 atgcgattgctgaatacatattatgcagagcttgagaccgcaactgtaagtgattttttatatgtcaactgctttctgatggaacaatcattataatatg 23333548  T
Q  317 ctgaattacgttggacaaaatccctaattcaaatgatttcgttggcttgcttaatgtcgtcattacgaagatgcgcacgacagggcataagataaattgc 416  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||    
T  23333547 ctgacttacgttggacaaaatccctaattcaaatgatttcgttggcttgcttaatgtcgtcattacgaagatgcgcacgatggggcataagataaattgc 23333448  T
Q  417 gaacattttaggagtttgcctctagctatgtgtaatactcccaaaaagtataacaaatttgcaaccagtgtggtggattctttttggactgccgtatttt 516  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||    
T  23333447 gaacattttaggagtttgcctctagctatgtgtaatactcccaaaaggtataacaaatttgcaaccagtgtggtggattctttttggactgctgtatttt 23333348  T
Q  517 ttcttatggagtctttctatcttgaccattaaaattaagctgagcaccagattttaattaaccaacgtaaattttgcagcattaattaactcaaaaaggt 616  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23333347 ttcttatggagtctttctgtcttgaccattaaaattaagctgagcaccagattttaattaaccaacgtaaattttgcagcattaattaactcaaaaaggt 23333248  T
Q  617 ttgcgtggaaaatagatgtttgttcttctctattttgctggccacatgttgttttgaa 674  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  23333247 ttgcgtggaaaatagatgtttgttcttctctattttgctggccacatgttgttttgaa 23333190  T

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