View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0200_1D_high_6 (Length: 401)

Name: NF0200_1D_high_6
Description: NF0200_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0200_1D_high_6
NF0200_1D_high_6
[»] chr5 (2 HSPs)
chr5 (20-343)||(38815456-38815781)
chr5 (339-401)||(38815928-38815990)
[»] chr7 (2 HSPs)
chr7 (207-304)||(39079876-39079973)
chr7 (255-312)||(21048692-21048749)
[»] chr1 (1 HSPs)
chr1 (207-304)||(19810946-19811043)
[»] chr8 (1 HSPs)
chr8 (207-261)||(25971173-25971227)
[»] chr6 (2 HSPs)
chr6 (256-302)||(2115530-2115576)
chr6 (209-262)||(18286713-18286766)
[»] chr2 (2 HSPs)
chr2 (240-286)||(33455859-33455905)
chr2 (250-295)||(7252252-7252297)
[»] chr3 (1 HSPs)
chr3 (250-295)||(1348868-1348913)
[»] scaffold1034 (1 HSPs)
scaffold1034 (229-304)||(819-895)


Alignment Details
Target: chr5 (Bit Score: 307; Significance: 1e-173; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 307; E-Value: 1e-173
Query Start/End: Original strand, 20 - 343
Target Start/End: Original strand, 38815456 - 38815781
Alignment:
Q  20 tcacggctatttagatctctaggctgtgtaggactaacccagcctctcacacccagcaaaattaaggtgctcgaagctgcaatgaaggaaatttaaaagc 119  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38815456 tcacggctatttagatctctaggctgtgtaggactaacccagcctctcacacccagcaaaattaaggtgctcgaagctgcaatgaaggaaatttaaaagc 38815555  T
Q  120 caaatttaagatggctaggggcagaccacaatcaaggcaaaatttccaacac--tgcctcacaacctggcataaattgggctaggggcatggacaatgcg 217  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| ||||||||||||||||||||    
T  38815556 caaatttaagatggctaggggaagaccacaatcaaggcaaaatttccaacaccctgcctcacaacctggcataaattggactaggggcatggacaatgcg 38815655  T
Q  218 ggcagtccaacaacagatctaggatagactccgatatcatcttagagtttgggttgagtctaattcaaccctacaaaatcggcttgtcaggtgcgcactg 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38815656 ggcagtccaacaacagatctaggatagactccgatatcatcttagagtttgggttgagtctaattcaaccctacaaaatcggcttgtcaggtgcgcactg 38815755  T
Q  318 tccaaacttacaagcactactactta 343  Q
    ||||||||||||||||||||||||||    
T  38815756 tccaaacttacaagcactactactta 38815781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 339 - 401
Target Start/End: Original strand, 38815928 - 38815990
Alignment:
Q  339 acttaggccatgtctcttggtcatgcgggactaaacccgacctctcaagtccaacacaatgaa 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38815928 acttaggccatgtctcttggtcatgcgggactaaacccgacctctcaagtccaacacaatgaa 38815990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 207 - 304
Target Start/End: Original strand, 39079876 - 39079973
Alignment:
Q  207 tggacaatgcgggcagtccaacaacagatctaggatagactccgatatcatcttagagtttgggttgagtctaattcaaccctacaaaatcggcttgt 304  Q
    |||||||||| || || ||||| ||||||||||||||| ||| |||  ||||||| | ||||||||| | |||| | |||| ||||||| ||||||||    
T  39079876 tggacaatgcaggaagcccaacgacagatctaggataggctctgatgccatcttaaaatttgggttgggcctaactaaaccttacaaaaccggcttgt 39079973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 255 - 312
Target Start/End: Original strand, 21048692 - 21048749
Alignment:
Q  255 catcttagagtttgggttgagtctaattcaaccctacaaaatcggcttgtcaggtgcg 312  Q
    ||||||||| ||||||||||| |||| |||||| || ||||| ||||||| |||||||    
T  21048692 catcttagaatttgggttgagcctaactcaaccttataaaattggcttgtaaggtgcg 21048749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 207 - 304
Target Start/End: Original strand, 19810946 - 19811043
Alignment:
Q  207 tggacaatgcgggcagtccaacaacagatctaggatagactccgatatcatcttagagtttgggttgagtctaattcaaccctacaaaatcggcttgt 304  Q
    ||||| ||||||| || ||  ||||||||||||||||| ||| |||| ||||||| | ||||||||  | |||| |||||| ||||||| ||||||||    
T  19810946 tggacgatgcgggaagccctgcaacagatctaggatagtctctgataccatcttaaaatttgggttcggcctaagtcaaccttacaaaaccggcttgt 19811043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 207 - 261
Target Start/End: Complemental strand, 25971227 - 25971173
Alignment:
Q  207 tggacaatgcgggcagtccaacaacagatctaggatagactccgatatcatctta 261  Q
    ||||| ||||||| |||||||||||||||||||||||| ||| |||  |||||||    
T  25971227 tggacgatgcgggaagtccaacaacagatctaggataggctctgattccatctta 25971173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 302
Target Start/End: Complemental strand, 2115576 - 2115530
Alignment:
Q  256 atcttagagtttgggttgagtctaattcaaccctacaaaatcggctt 302  Q
    |||||| | |||||||||||||||||| |||||||||||| ||||||    
T  2115576 atcttaaaatttgggttgagtctaattgaaccctacaaaaccggctt 2115530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 262
Target Start/End: Complemental strand, 18286766 - 18286713
Alignment:
Q  209 gacaatgcgggcagtccaacaacagatctaggatagactccgatatcatcttag 262  Q
    ||||||||||| || || |||||||||||| ||||| ||| |||||||||||||    
T  18286766 gacaatgcgggaagcccgacaacagatctacgataggctctgatatcatcttag 18286713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 240 - 286
Target Start/End: Complemental strand, 33455905 - 33455859
Alignment:
Q  240 gatagactccgatatcatcttagagtttgggttgagtctaattcaac 286  Q
    ||||||||| |||| ||||||||| |||||||||||||||| |||||    
T  33455905 gatagactctgataccatcttagaatttgggttgagtctaactcaac 33455859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 295
Target Start/End: Complemental strand, 7252297 - 7252252
Alignment:
Q  250 gatatcatcttagagtttgggttgagtctaattcaaccctacaaaa 295  Q
    |||| ||||||||| ||||||||||| |||| ||||||||||||||    
T  7252297 gataccatcttagaatttgggttgagcctaactcaaccctacaaaa 7252252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 250 - 295
Target Start/End: Original strand, 1348868 - 1348913
Alignment:
Q  250 gatatcatcttagagtttgggttgagtctaattcaaccctacaaaa 295  Q
    |||||||||||| | |||||||||||||||| |||||| |||||||    
T  1348868 gatatcatcttaaaatttgggttgagtctaactcaaccatacaaaa 1348913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold1034 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1034
Description:

Target: scaffold1034; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 229 - 304
Target Start/End: Complemental strand, 895 - 819
Alignment:
Q  229 aacagatctaggatagactccgatatcatcttagagtttgggttgagtctaattcaaccc-tacaaaatcggcttgt 304  Q
    |||||||||  | ||||||| |||||||||||||| |||| |||  | |||||||||||| ||||||||| ||||||    
T  895 aacagatcttagttagactctgatatcatcttagaatttgagttaggcctaattcaacccttacaaaatcagcttgt 819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2178 times since January 2019
Visitors: 2399