View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0200_1D_high_7 (Length: 341)

Name: NF0200_1D_high_7
Description: NF0200_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0200_1D_high_7
NF0200_1D_high_7
[»] chr2 (3 HSPs)
chr2 (24-252)||(40063038-40063266)
chr2 (24-252)||(40093669-40093897)
chr2 (30-252)||(40081388-40081611)
[»] chr4 (2 HSPs)
chr4 (238-337)||(24543310-24543409)
chr4 (85-200)||(22012641-22012756)
[»] chr3 (1 HSPs)
chr3 (103-143)||(44356174-44356214)


Alignment Details
Target: chr2 (Bit Score: 221; Significance: 1e-121; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 24 - 252
Target Start/End: Complemental strand, 40063266 - 40063038
Alignment:
Q  24 ggtttgagtaaaaggtcctctgtagttgcatgagtctgtgcaatcggcatttgaagcaacatatgtaggccagtatcgcccaatgctttgtccatttacc 123  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40063266 ggtttgagtaaaaggtcctctgtagttgcatgagtctgtgcaatcggcatttgaagcaacatatgtaggccagtatcgcccaatgctttgtccatttacc 40063167  T
Q  124 caagcctcgccttttcccatccccgtgaagtcaatcgcaactggattactgccggatggagcatcaaagtttgtctaacgcaacatgtatgacattggtt 223  Q
    |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||    
T  40063166 caagcctcaccttttcccatccccgtgaagtcaatcgcaactggattactgccggatggagcatcaaagtttgtctaatgcaacatgtatgacattggtt 40063067  T
Q  224 agtaccaaaaaacatttttcatatagtgg 252  Q
    |||||||||||||||||||||||||||||    
T  40063066 agtaccaaaaaacatttttcatatagtgg 40063038  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 24 - 252
Target Start/End: Complemental strand, 40093897 - 40093669
Alignment:
Q  24 ggtttgagtaaaaggtcctctgtagttgcatgagtctgtgcaatcggcatttgaagcaacatatgtaggccagtatcgcccaatgctttgtccatttacc 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40093897 ggtttgagtaaaaggtcctctgtagttgcatgagtctgtgcaatcgacatttgaagcaacatatgtaggccagtatcgcccaatgctttgtccatttacc 40093798  T
Q  124 caagcctcgccttttcccatccccgtgaagtcaatcgcaactggattactgccggatggagcatcaaagtttgtctaacgcaacatgtatgacattggtt 223  Q
    ||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  40093797 caagcctcgccttttcccatccctgtgaagtcaatcacaactggattactgccggatggagcatcaaagtttgtctaatgcaacatgcatgacattggtt 40093698  T
Q  224 agtaccaaaaaacatttttcatatagtgg 252  Q
    |||| ||||||||||||||||||||||||    
T  40093697 agtagcaaaaaacatttttcatatagtgg 40093669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 180; E-Value: 4e-97
Query Start/End: Original strand, 30 - 252
Target Start/End: Complemental strand, 40081611 - 40081388
Alignment:
Q  30 agtaaaaggtcctctgtagttgcatgagtctgtgcaatcggcatttgaagcaacatatgtaggccagtatcgcccaatgctttgtccatttacccaagcc 129  Q
    |||| |||||||||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||    
T  40081611 agtataaggtcctctatagttgcatgagtctgtgcaaccggcatttgaagcgacatatgtaggccagtatcgcccaatgctttgtccatttacccaagcc 40081512  T
Q  130 tcgccttttcccatccccgtgaagtcaatcgcaactggattactgccggatggagcatcaaagtttgtctaacgcaacatgtatgacattggttagta-c 228  Q
    || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||| ||||||||||||| |    
T  40081511 tcaccttttcccatccccgtgaagtcaatcgcaactggattactgccggatggagcatcaaagtttgtctagtgcaacatgtattacattggttagtagc 40081412  T
Q  229 caaaaaacatttttcatatagtgg 252  Q
     |||||||||||||||||||||||    
T  40081411 aaaaaaacatttttcatatagtgg 40081388  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 92; Significance: 1e-44; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 92; E-Value: 1e-44
Query Start/End: Original strand, 238 - 337
Target Start/End: Complemental strand, 24543409 - 24543310
Alignment:
Q  238 tttttcatatagtggtttcttgtaaacttgtggtttctgtgaaagtgtagggttctctttctcctttcccttgccaactttatcagaagagggtccaccc 337  Q
    |||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24543409 tttttcatttactggtttcttgtaaacttgtggtttctgtgaaagtgtagggttctctttctcctttcccttgccaactttatcagaagagggtccaccc 24543310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 85 - 200
Target Start/End: Original strand, 22012641 - 22012756
Alignment:
Q  85 tatgtaggccagtatcgcccaatgctttgtccatttacccaagcctcgccttttcccatccccgtgaagtcaatcgcaactggattactgccggatggag 184  Q
    ||||| |||||||||||||||||||| ||||| || |||||||| |||||||||||||||||||||||||| || ||||| || ||||| ||||| ||||    
T  22012641 tatgttggccagtatcgcccaatgctctgtccgttcacccaagcttcgccttttcccatccccgtgaagtcgattgcaaccgggttacttccggagggag 22012740  T
Q  185 catcaaagtttgtcta 200  Q
    || ||||||| |||||    
T  22012741 caacaaagttcgtcta 22012756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 103 - 143
Target Start/End: Original strand, 44356174 - 44356214
Alignment:
Q  103 ccaatgctttgtccatttacccaagcctcgccttttcccat 143  Q
    |||||||||||||||||||||||||| || |||||| ||||    
T  44356174 ccaatgctttgtccatttacccaagcttcaccttttgccat 44356214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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