View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0200_1D_high_8 (Length: 332)
Name: NF0200_1D_high_8
Description: NF0200_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0200_1D_high_8 |
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| [»] chr2 (5 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 303; Significance: 1e-170; HSPs: 5)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 14 - 332
Target Start/End: Complemental strand, 11191491 - 11191173
Alignment:
| Q |
14 |
ctttttatttctggttattattattttttaatcctactagtgtgagaccataattttttacttgtgtcacatttttcctcgcaggctcttggtcctgatt |
113 |
Q |
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| T |
11191491 |
ctttttatttctggttattattattttttaatcctactagtgtgagaccataattttttacttgtgtcacatttttcctcgcaggctcttggtcctgatt |
11191392 |
T |
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| Q |
114 |
gggaagttccattaggaagaagagatagtttcgatgcaaatcaaggtcttgctaatacaagccttcctggtccccgatttcttcttgatgaattaaaaac |
213 |
Q |
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| T |
11191391 |
gggaagttccattaggaagaagagatagtttcaatgcaaatcaaagtcttgctaattcaagccttcctggtccccgatttcttcttgatgaattaaaaac |
11191292 |
T |
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| Q |
214 |
ctcctttcttaatcaaggtctcgacactactgatcttgttgcactttcaggtataaatgtttgtctccttaaaatctatatctctacacaaaacatgtgt |
313 |
Q |
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| T |
11191291 |
ctcctttcttaatcaaggtctcgacactactgatcttgttgcactttcaggtataaatgtttgtctccttaaaatctatatctctacacataacatgtgt |
11191192 |
T |
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| Q |
314 |
acattttacaaccgtttcg |
332 |
Q |
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| T |
11191191 |
acattttacaaccgtttcg |
11191173 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 94 - 293
Target Start/End: Complemental strand, 11184293 - 11184093
Alignment:
| Q |
94 |
gcaggctcttggtcctgattgggaagttccattaggaagaagagatagtttcgatgcaaatcaaggtcttgctaatacaagccttcctggtccccgattt |
193 |
Q |
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| T |
11184293 |
gcaggctcatggtcctgattgggaagttccattaggaagaagagatagtttgaatgcaaatcaaactcttgctaatttaaaccttcctcgtccccaattg |
11184194 |
T |
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| Q |
194 |
cttcttgatgaattaaaaacctcctttcttaatcaaggtctcgacactactgatcttgttgcactttcaggtataaatg-tttgtctccttaaaatctat |
292 |
Q |
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| T |
11184193 |
aatcttactcagctaatattctccttttctaaacaaggtctcaacattactgatcttgttgcactttcaggtataaaagttttgtctcctaaaaagctat |
11184094 |
T |
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| Q |
293 |
a |
293 |
Q |
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| T |
11184093 |
a |
11184093 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 94 - 144
Target Start/End: Original strand, 11172354 - 11172404
Alignment:
| Q |
94 |
gcaggctcttggtcctgattgggaagttccattaggaagaagagatagttt |
144 |
Q |
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| T |
11172354 |
gcaggctaatggtcctgattggaaagtgccattaggaagaagagatagttt |
11172404 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 223 - 268
Target Start/End: Original strand, 11172483 - 11172528
Alignment:
| Q |
223 |
taatcaaggtctcgacactactgatcttgttgcactttcaggtata |
268 |
Q |
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| T |
11172483 |
taatcaaggtctcgacgctacagatctagttgcactttcaggtata |
11172528 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 104 - 144
Target Start/End: Original strand, 11145551 - 11145591
Alignment:
| Q |
104 |
ggtcctgattgggaagttccattaggaagaagagatagttt |
144 |
Q |
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| T |
11145551 |
ggtcctgattggaaagttcctttaggaagaagagatggttt |
11145591 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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