View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0200_1D_low_12 (Length: 323)
Name: NF0200_1D_low_12
Description: NF0200_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0200_1D_low_12 |
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Alignment Details
Target: chr2 (Bit Score: 245; Significance: 1e-136; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 40062971 - 40062678
Alignment:
| Q |
1 |
ttgtaccaaatcaatggttgattcttagggaaagtagactgtgagttccaaccttcggaacttccactggacagacctaaatcttcaccttttaggccaa |
100 |
Q |
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| T |
40062971 |
ttgtaccaaatcaatggttgattcttagggaaagtagactgtgagttccaaccttcggaacttccactggacagacctaaatcttcaccttttaggccaa |
40062872 |
T |
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| Q |
101 |
cctgtatcaatagaattaactccattaacaatcaatctccattaagactaataaatagtctttga------------tcaaaagttaagactgacctgat |
188 |
Q |
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| T |
40062871 |
cctgtatcaatagaattaactccattaacaatcaatctccattaagactaataaatagtctttgatcaagtctttgatcaaaagttaagactgacctgat |
40062772 |
T |
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| Q |
189 |
atgtccacttctgagaggagagatcaagagtgttgttgccattcttcaaacctttcaatgtcactggaccggtgatccccgctccccatgtgtc |
282 |
Q |
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| T |
40062771 |
atgtccacttctgagaggagagatcaagagtgttgttgccattcttcaaacctttcaatgttactggaccggtgatccccgctccccatctgtc |
40062678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 178; E-Value: 5e-96
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 40093602 - 40093330
Alignment:
| Q |
1 |
ttgtaccaaatcaatggttgattcttagggaaagtagactgtgagttccaaccttcggaacttccactggacagacctaaatcttcaccttttaggccaa |
100 |
Q |
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|||||||||||||||||||| |||||||||||||||| || ||| ||||| || ||||||||||||| || |||||||||||||||||||||||||||| |
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| T |
40093602 |
ttgtaccaaatcaatggttgtttcttagggaaagtagtctttgaattccacgctccggaacttccactagagagacctaaatcttcaccttttaggccaa |
40093503 |
T |
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| Q |
101 |
cctgtatcaatagaattaactccattaacaatcaatctccattaagactaataaatagtctttgatcaaaagttaagactgacctgatatgtccacttct |
200 |
Q |
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| T |
40093502 |
cctgtatcaaaagaattaactccattaactatg---------taagactaacaaatagtcttcgatcaaaagtgaagactgacctgatatgtccacttcc |
40093412 |
T |
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| Q |
201 |
gagaggagagatcaagagtgttgttgccattcttcaaacctttcaatgtcactggaccggtgatccccgctccccatgtgtc |
282 |
Q |
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| T |
40093411 |
gagaggagagatcaagagtcttgttgccattcttcaaacctttcaatatcactggaccggtgatccccgctccccatgtgtc |
40093330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 40081321 - 40081035
Alignment:
| Q |
1 |
ttgtaccaaatcaatggttgattcttagggaaagtagactgtgagttccaaccttcggaacttccactggacagacctaaatcttcaccttttaggccaa |
100 |
Q |
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|||||||||| ||||||||| ||||||||| ||||||||||||| ||||| ||| | ||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
40081321 |
ttgtaccaaaccaatggttggttcttagggtaagtagactgtgaattccaccctccagaacttccactagacagacctaaatcttcgccttttaggccaa |
40081222 |
T |
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| Q |
101 |
cctgtatcaatagaattaactccattaacaatcaatctccattaa-------------gactaataaatagtctttgatcaaaagtt-aagactgacctg |
186 |
Q |
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| T |
40081221 |
tctgtatcgaaaaaattaactccattaacaatgtat-tccattaaagtgataaagaaagaataataaatagttttcgatcaaaaatttaagattgacctg |
40081123 |
T |
|
| Q |
187 |
atatgtccacttctgagaggagagatcaagagtgttgttgccattcttcaaacctttcaatgtcactggaccggtgatccccgctccc |
274 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||||||| |||||| |
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| T |
40081122 |
atatgtccacttccgagaggagagatcaagagtgttgttgccattcttcaaacctttcaatatcacgggaccggtgatccctgctccc |
40081035 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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