View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0200_1D_low_20 (Length: 250)

Name: NF0200_1D_low_20
Description: NF0200_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0200_1D_low_20
NF0200_1D_low_20
[»] chr1 (20 HSPs)
chr1 (1-243)||(3544593-3544835)
chr1 (1-240)||(1248081-1248319)
chr1 (101-243)||(28358396-28358538)
chr1 (99-243)||(5809085-5809229)
chr1 (1-243)||(13867325-13867567)
chr1 (99-243)||(19014476-19014619)
chr1 (100-243)||(52691976-52692119)
chr1 (91-240)||(40563053-40563202)
chr1 (99-213)||(45795710-45795824)
chr1 (121-206)||(22191311-22191396)
chr1 (121-206)||(3074271-3074356)
chr1 (121-206)||(21405363-21405448)
chr1 (70-166)||(20987638-20987734)
chr1 (103-243)||(38070340-38070480)
chr1 (147-243)||(45795827-45795923)
chr1 (159-242)||(27393442-27393525)
chr1 (196-243)||(32352802-32352849)
chr1 (141-211)||(45270787-45270857)
chr1 (99-167)||(25504562-25504630)
chr1 (1-33)||(45795612-45795644)
[»] chr6 (19 HSPs)
chr6 (1-243)||(14843629-14843871)
chr6 (100-243)||(19350449-19350592)
chr6 (97-243)||(32186185-32186331)
chr6 (100-243)||(14686500-14686643)
chr6 (100-243)||(29976500-29976650)
chr6 (49-243)||(25350676-25350870)
chr6 (97-241)||(26514226-26514370)
chr6 (100-243)||(13086044-13086187)
chr6 (126-211)||(10362664-10362749)
chr6 (106-239)||(7956167-7956299)
chr6 (121-206)||(29056045-29056130)
chr6 (158-242)||(10919957-10920041)
chr6 (140-243)||(1104439-1104542)
chr6 (1-32)||(14686711-14686742)
chr6 (158-243)||(34434823-34434908)
chr6 (103-167)||(11060430-11060494)
chr6 (97-161)||(13938221-13938285)
chr6 (99-167)||(17078758-17078826)
chr6 (99-167)||(18051017-18051085)
[»] chr5 (16 HSPs)
chr5 (1-243)||(476619-476861)
chr5 (56-243)||(380362-380549)
chr5 (99-243)||(42259784-42259928)
chr5 (99-184)||(22176377-22176462)
chr5 (99-219)||(42039221-42039341)
chr5 (142-182)||(29572425-29572465)
chr5 (142-182)||(29573802-29573842)
chr5 (142-182)||(29575179-29575219)
chr5 (142-182)||(29576556-29576596)
chr5 (142-182)||(29577933-29577973)
chr5 (142-182)||(29579310-29579350)
chr5 (142-206)||(41590643-41590707)
chr5 (142-211)||(4297833-4297902)
chr5 (189-230)||(22437810-22437851)
chr5 (99-167)||(19513033-19513101)
chr5 (97-161)||(33170160-33170224)
[»] scaffold0043 (1 HSPs)
scaffold0043 (1-241)||(34103-34343)
[»] chr3 (20 HSPs)
chr3 (1-243)||(31675337-31675579)
chr3 (1-243)||(31920843-31921085)
chr3 (100-243)||(19875748-19875891)
chr3 (141-243)||(25024336-25024438)
chr3 (100-243)||(53941808-53941951)
chr3 (99-243)||(40513216-40513360)
chr3 (100-243)||(55367115-55367258)
chr3 (126-211)||(52250648-52250733)
chr3 (100-243)||(14307713-14307856)
chr3 (141-243)||(48930272-48930374)
chr3 (99-243)||(34829904-34830041)
chr3 (99-243)||(14863957-14864101)
chr3 (142-211)||(6825369-6825438)
chr3 (103-180)||(35537276-35537353)
chr3 (103-239)||(46190000-46190136)
chr3 (121-203)||(31547897-31547980)
chr3 (190-243)||(42807264-42807317)
chr3 (121-206)||(44888430-44888515)
chr3 (97-161)||(962737-962801)
chr3 (1-33)||(34829825-34829857)
[»] chr7 (18 HSPs)
chr7 (100-243)||(27218614-27218757)
chr7 (103-243)||(19544894-19545034)
chr7 (56-230)||(20349425-20349598)
chr7 (103-243)||(34103985-34104125)
chr7 (99-242)||(17504052-17504195)
chr7 (99-242)||(17549019-17549162)
chr7 (141-243)||(11341342-11341444)
chr7 (121-206)||(17056055-17056140)
chr7 (158-206)||(8752925-8752973)
chr7 (99-179)||(23887588-23887667)
chr7 (99-179)||(23898764-23898843)
chr7 (126-206)||(25018847-25018927)
chr7 (116-206)||(22819246-22819336)
chr7 (141-243)||(13553676-13553778)
chr7 (159-229)||(20918524-20918594)
chr7 (158-243)||(23054463-23054548)
chr7 (151-204)||(39658919-39658972)
chr7 (170-211)||(41805282-41805323)
[»] chr4 (17 HSPs)
chr4 (1-243)||(2071946-2072188)
chr4 (1-243)||(43516240-43516482)
chr4 (100-243)||(9690927-9691070)
chr4 (103-193)||(52617407-52617497)
chr4 (103-242)||(56336993-56337132)
chr4 (99-217)||(7098986-7099104)
chr4 (103-206)||(36183045-36183148)
chr4 (147-211)||(38296258-38296322)
chr4 (99-167)||(49925835-49925903)
chr4 (67-243)||(55725198-55725374)
chr4 (196-243)||(3129481-3129528)
chr4 (196-243)||(23872968-23873015)
chr4 (141-243)||(2365552-2365654)
chr4 (121-206)||(9777896-9777981)
chr4 (141-182)||(41382519-41382560)
chr4 (99-167)||(19114940-19115008)
chr4 (145-229)||(55464379-55464463)
[»] chr2 (7 HSPs)
chr2 (100-243)||(6823916-6824059)
chr2 (99-243)||(11196855-11196999)
chr2 (126-211)||(43310790-43310875)
chr2 (141-211)||(26146761-26146831)
chr2 (100-240)||(9668501-9668641)
chr2 (127-211)||(10689087-10689170)
chr2 (99-167)||(15018181-15018249)
[»] chr8 (14 HSPs)
chr8 (97-243)||(25193590-25193736)
chr8 (99-240)||(6245593-6245727)
chr8 (92-243)||(29721402-29721553)
chr8 (103-243)||(15439632-15439765)
chr8 (103-243)||(15530936-15531069)
chr8 (100-243)||(36025026-36025169)
chr8 (121-243)||(18187672-18187794)
chr8 (103-239)||(37165617-37165753)
chr8 (100-242)||(12341072-12341214)
chr8 (142-211)||(36492928-36492997)
chr8 (158-208)||(12332411-12332461)
chr8 (99-167)||(6901413-6901481)
chr8 (103-167)||(17659339-17659403)
chr8 (99-167)||(36157658-36157726)
[»] scaffold0189 (1 HSPs)
scaffold0189 (100-239)||(6593-6732)
[»] scaffold0048 (1 HSPs)
scaffold0048 (158-243)||(63791-63876)
[»] scaffold0026 (1 HSPs)
scaffold0026 (126-182)||(67611-67667)
[»] scaffold0131 (1 HSPs)
scaffold0131 (196-243)||(4048-4095)
[»] scaffold0029 (1 HSPs)
scaffold0029 (196-243)||(134346-134393)
[»] scaffold0002 (2 HSPs)
scaffold0002 (196-243)||(312173-312220)
scaffold0002 (196-243)||(327627-327674)
[»] scaffold0061 (1 HSPs)
scaffold0061 (141-211)||(55208-55278)
[»] scaffold0017 (1 HSPs)
scaffold0017 (141-211)||(143356-143426)


Alignment Details
Target: chr1 (Bit Score: 235; Significance: 1e-130; HSPs: 20)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 235; E-Value: 1e-130
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 3544835 - 3544593
Alignment:
Q  1 tcaccaagccacctgtcataccaaaagtaagtagacacaccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacccatcc 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3544835 tcaccaagccacctgtcataccaaaagtaagtagacacgccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacccatcc 3544736  T
Q  101 catccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  3544735 catccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccct 3544636  T
Q  201 ataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  3544635 ataccaaaaaccatctctatctaccaacattcgccaacaccat 3544593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 240
Target Start/End: Complemental strand, 1248319 - 1248081
Alignment:
Q  1 tcaccaagccacctgtcataccaaaagtaagtagacacaccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacccatcc 100  Q
    |||||||||||||||||||||||||||||||||| ||  ||||| ||||||||  |||| |||| |||| |||||||||||||| || | ||||||| ||    
T  1248319 tcaccaagccacctgtcataccaaaagtaagtagccaagccattccctaccctcttcgacaccctctcctcaaaccaactccccgcagcttcacccaccc 1248220  T
Q  101 catccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccct 200  Q
    ||||||||||||||||||||||| ||||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| ||| |||| || |||    
T  1248219 catccctaatcttcactacttccctccaccaagatgaagtactccag-cccctacctccaacctccctacctcctcaccatatctcgccaccaacagcct 1248121  T
Q  201 ataccaaaaaccatctctatctaccaacattcgccaacac 240  Q
    ||||||||||||| || |||| ||||| || | |||||||    
T  1248120 ataccaaaaaccacctttatccaccaatatacaccaacac 1248081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 101 - 243
Target Start/End: Original strand, 28358396 - 28358538
Alignment:
Q  101 catccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccct 200  Q
    |||||||||||||| |||||||| |||||||||||||   |||||||||||| ||||||||||||||||||||||||||||||| ||| |||| ||||||    
T  28358396 catccctaatcttcgctacttccctccaccaagatgagacactccggcccccaacctccaacctccctgcctcctcaccatatctcgccaccaacaccct 28358495  T
Q  201 ataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
     |||||||| ||  ||||||||||||||| || ||||||||||    
T  28358496 gtaccaaaacccgcctctatctaccaacaatctccaacaccat 28358538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 99 - 243
Target Start/End: Original strand, 5809085 - 5809229
Alignment:
Q  99 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcacc 198  Q
    |||||||||||||||||||||||||| |||| ||||||||  |||||||||||| ||||||||||||||  ||| | ||||||| | |||||| || |||    
T  5809085 cccatccctaatcttcactacttcctgccactaagatgaaacactccggcccccaacctccaacctcccaaccttcacaccataccgcgctacaagaacc 5809184  T
Q  199 ctataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    |||||||| |  ||| || | || |||||||| ||||||||||||    
T  5809185 ctataccagagcccacctttgtccaccaacatccgccaacaccat 5809229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 13867567 - 13867325
Alignment:
Q  1 tcaccaagccacctgtcataccaaaagtaagtagacacaccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacccatcc 100  Q
    |||||||||||||||||||||||||||||||||     |||||  |||||  |  |||| |||| ||| |||||||| | ||||||  | || || | ||    
T  13867567 tcaccaagccacctgtcataccaaaagtaagtactagaaccatctcctactttcttcgacaccctctctgcaaaccagcccccctctacatcgcctaccc 13867468  T
Q  101 catccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccct 200  Q
    |||||||||||||  ||| ||    |||||| ||||||  ||||| |||||| |||||||||| ||| |||  ||||||||| |  |||||||| |||||    
T  13867467 catccctaatctttgctatttttcgccaccacgatgaaacactcctgcccccaacctccaaccgcccagccgtctcaccataccgagctaccaggaccct 13867368  T
Q  201 ataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    |||||| |||||| ||||||| |||||||| ||||||||||||    
T  13867367 ataccataaaccacctctatccaccaacatccgccaacaccat 13867325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 99 - 243
Target Start/End: Complemental strand, 19014619 - 19014476
Alignment:
Q  99 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcacc 198  Q
    ||||||||||||||||||||  ||| |||||||||| |||  |||||||||||  |||||||||||||||| |||||||||||||| ||| |||| |||     
T  19014619 cccatccctaatcttcactatctccctccaccaagaagaaacactccggcccca-acctccaacctccctgtctcctcaccatatctcgccaccaacact 19014521  T
Q  199 ctataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
      ||||||||| ||| |||| || |||||||| ||||||| ||||    
T  19014520 taataccaaaacccacctctgtccaccaacatccgccaactccat 19014476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 100 - 243
Target Start/End: Original strand, 52691976 - 52692119
Alignment:
Q  100 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccc 199  Q
    |||||| |||||||| |||  ||| |||||||||| |||  |||||| ||| ||||| |||||||||| |||||||||||||| | ||| |||| |||||    
T  52691976 ccatccttaatcttcgctatctccctccaccaagaagaatcactccgaccctctaccaccaacctcccagcctcctcaccataccgcgccaccaacaccc 52692075  T
Q  200 tataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    ||||||| || || |||||||| |||||||| | ||||||||||    
T  52692076 tataccagaacccctctctatccaccaacatcctccaacaccat 52692119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 91 - 240
Target Start/End: Complemental strand, 40563202 - 40563053
Alignment:
Q  91 tcacccatcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgcta 190  Q
    |||||||  ||||||||||||||| |||  ||  ||||||||||||||  | |||||||||| |||||||||||| ||||||| || ||||||| ||| |    
T  40563202 tcacccactccatccctaatcttcgctatctctctccaccaagatgaaacagtccggcccccaacctccaacctctctgcctcatctccatatctcgcca 40563103  T
Q  191 ccagcaccctataccaaaaaccatctctatctaccaacattcgccaacac 240  Q
    |||  || |||||||| || || |||||||| |||||||| | |||||||    
T  40563102 ccaaaactctataccacaacccgtctctatccaccaacatcctccaacac 40563053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 99 - 213
Target Start/End: Original strand, 45795710 - 45795824
Alignment:
Q  99 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcacc 198  Q
    |||||||||||||||| ||||||||  |||||||||||||  ||||| |||||| |||||||||| |||  ||  ||||||||| |  |||||||| |||    
T  45795710 cccatccctaatcttcgctacttcccgccaccaagatgaaacactcctgcccccaacctccaaccgcccaaccgtctcaccataccgtgctaccaggacc 45795809  T
Q  199 ctataccaaaaacca 213  Q
     ||||||| ||||||    
T  45795810 ttataccataaacca 45795824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 121 - 206
Target Start/End: Complemental strand, 22191396 - 22191311
Alignment:
Q  121 tccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctatacca 206  Q
    ||||||||||| || |||  |||||||||||| ||| ||||||||||  ||||||||||||| ||||| |||| ||||||||||||    
T  22191396 tccttccaccacgaagaaacactccggcccccaaccaccaacctcccatcctcctcaccataacacgccaccaacaccctatacca 22191311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 206
Target Start/End: Original strand, 3074271 - 3074356
Alignment:
Q  121 tccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctatacca 206  Q
    ||||||||||| || |||  ||||||| |||| ||| ||||||||||  ||||||||||||| | |||||||| ||||||||||||    
T  3074271 tccttccaccacgaagaaacactccggtccccaaccgccaacctcccatcctcctcaccataacgcgctaccaacaccctatacca 3074356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 121 - 206
Target Start/End: Original strand, 21405363 - 21405448
Alignment:
Q  121 tccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctatacca 206  Q
    ||||||||||| || |||  |||| ||||||| ||| ||||||||||  ||||||||||||| |  ||||||| ||||||||||||    
T  21405363 tccttccaccacgaagaaacactctggcccccaaccaccaacctcccatcctcctcaccataacgtgctaccaacaccctatacca 21405448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 70 - 166
Target Start/End: Original strand, 20987638 - 20987734
Alignment:
Q  70 gcaaaccaactcccctcatcgtcacccatcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctcc 166  Q
    |||||||||||| |||||   || || |||||||||||||||||| |||  ||| ||||||||   |||  ||||| ||||||||||||||||||||    
T  20987638 gcaaaccaactctcctcagaatcgcctatcccatccctaatcttcgctatctccctccaccaaagagaaccactcctgccccctacctccaacctcc 20987734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 243
Target Start/End: Original strand, 38070340 - 38070480
Alignment:
Q  103 tccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctat 202  Q
    |||||||||||| |||  ||  |||||||||  |||  |||||| ||||| |||||||||| ||| |||||||||||||| |  || ||||  || ||||    
T  38070340 tccctaatcttcgctaactctctccaccaagtagaaacactccgacccccaacctccaaccgcccagcctcctcaccataccttgccaccaaaactctat 38070439  T
Q  203 accaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    |||| || ||  ||||||| |||||||  ||||||||||||    
T  38070440 accacaaccctcctctatccaccaacaaccgccaacaccat 38070480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 243
Target Start/End: Original strand, 45795827 - 45795923
Alignment:
Q  147 gccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    |||||| |||||||||| |||  ||  ||||||||| |  |||||||| ||| ||||||| |||||| || |||| |||||||| ||||||||||||    
T  45795827 gcccccaacctccaaccgcccaaccgtctcaccataccgtgctaccaggaccttataccataaaccacctttatccaccaacatccgccaacaccat 45795923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 159 - 242
Target Start/End: Complemental strand, 27393525 - 27393442
Alignment:
Q  159 caacctccctgcctcctcaccatatcacgctaccagcaccctataccaaaaaccatctctatctaccaacattcgccaacacca 242  Q
    |||||||||||||||||||||||| |  || |||| |||| ||||||| |||||  ||||||| |||||||  | |||||||||    
T  27393525 caacctccctgcctcctcaccatacctagcaaccaacaccatataccataaacctcctctatcaaccaacaacctccaacacca 27393442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 32352849 - 32352802
Alignment:
Q  196 accctataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    ||||||||||| |||||| ||||||| |||||||| ||||||||||||    
T  32352849 accctataccacaaaccacctctatccaccaacatccgccaacaccat 32352802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 211
Target Start/End: Original strand, 45270787 - 45270857
Alignment:
Q  141 actccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctataccaaaaac 211  Q
    |||||||||||| ||||||||||||||  |||||||| |||||| ||| ||||  | ||||||||| ||||    
T  45270787 actccggcccccaacctccaacctcccatcctcctcatcatatctcgccaccaaaatcctataccataaac 45270857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 167
Target Start/End: Complemental strand, 25504630 - 25504562
Alignment:
Q  99 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccc 167  Q
    |||||||||||||||| | || |||  ||||||||| |||  |||| ||||||| ||||||||||||||    
T  25504630 cccatccctaatcttcccaacctcccgccaccaagaagaacaactctggcccccaacctccaacctccc 25504562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 45795612 - 45795644
Alignment:
Q  1 tcaccaagccacctgtcataccaaaagtaagta 33  Q
    ||||| |||||||||||||||||||||||||||    
T  45795612 tcacctagccacctgtcataccaaaagtaagta 45795644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 227; Significance: 1e-125; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 14843871 - 14843629
Alignment:
Q  1 tcaccaagccacctgtcataccaaaagtaagtagacacaccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacccatcc 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14843871 tcaccaagccacctgtcataccaaaagtaagtagacacgccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacccatcc 14843772  T
Q  101 catccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccct 200  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  14843771 catccctaatcttcactacttccttccaccaagatgaagtactccgtccccctacctccaacctccctgtctcctcaccatatctcgctaccagcaccct 14843672  T
Q  201 ataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  14843671 ataccaaaaaccatctctatctaccaacattcgccaacaccat 14843629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 100 - 243
Target Start/End: Original strand, 19350449 - 19350592
Alignment:
Q  100 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccc 199  Q
    ||||||||||||||| |||| |||||||||||||||||   |||||||||||| ||||||||||||||||||||||||||||||| ||| |||| |||||    
T  19350449 ccatccctaatcttcgctacctccttccaccaagatgatacactccggcccccaacctccaacctccctgcctcctcaccatatctcgccaccaacaccc 19350548  T
Q  200 tataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    |||||||||| ||| ||||||||| |||||  ||||||||||||    
T  19350549 tataccaaaacccacctctatctatcaacaaccgccaacaccat 19350592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 97 - 243
Target Start/End: Original strand, 32186185 - 32186331
Alignment:
Q  97 atcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagca 196  Q
    ||||||||||||||||||||||| ||| |||||||||| |||| |||||||||||| |||||||||||||| ||| |||||| ||||| ||| |||| ||    
T  32186185 atcccatccctaatcttcactacctccctccaccaagaagaagcactccggcccccaacctccaacctcccagccacctcactatatctcgccaccaaca 32186284  T
Q  197 ccctataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    ||||||||||||| ||| ||||||| |||||||   |||||||||||    
T  32186285 ccctataccaaaacccacctctatccaccaacaactgccaacaccat 32186331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 100 - 243
Target Start/End: Complemental strand, 14686643 - 14686500
Alignment:
Q  100 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccc 199  Q
    ||||||||||||||| |||||||  ||||||||||||||  ||||||||||||||||||||||| |||  ||  ||| ||||| | ||||||||| ||||    
T  14686643 ccatccctaatcttcgctacttctctccaccaagatgaaacactccggccccctacctccaaccgcccaaccgtctccccataccgcgctaccaggaccc 14686544  T
Q  200 tataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    |||||||||| ||  ||||||| |||||||| ||||||||||||    
T  14686543 tataccaaaatccgcctctatccaccaacatccgccaacaccat 14686500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 100 - 243
Target Start/End: Complemental strand, 29976650 - 29976500
Alignment:
Q  100 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacc-------tccaacctccctgcctcctcaccatatcacgctacc 192  Q
    ||||||||||||||| |||| |||||||||||||||||   |||||||||||| |||       |||||||||||||||||||||||||||| ||| |||    
T  29976650 ccatccctaatcttcgctacctccttccaccaagatgatacactccggcccccaacccccaacctccaacctccctgcctcctcaccatatctcgccacc 29976551  T
Q  193 agcaccctataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    | ||||||||||||||| ||| ||||||||| |||||  ||||||| ||||    
T  29976550 aacaccctataccaaaacccacctctatctatcaacaaccgccaacgccat 29976500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 49 - 243
Target Start/End: Original strand, 25350676 - 25350870
Alignment:
Q  49 acccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacccatcccatccctaatcttcactacttccttccaccaagatgaagtactccggc 148  Q
    |||||| |||| |||| ||| |||||||||| ||| ||   ||| || || ||||||||||||||| |||  ||| || ||||| | |||  ||||||||    
T  25350676 acccttttcgacaccctctctgcaaaccaacccccatccgtgtctcctattccatccctaatcttcgctatctccctcaaccaaaaagaatcactccggc 25350775  T
Q  149 cccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    |||||||| |||||||||| |||||||||||||| | ||| |||| |||||||||||| || ||||||||||| |||||||| | |||| |||||    
T  25350776 cccctaccaccaacctcccagcctcctcaccataccgcgccaccaacaccctataccagaacccatctctatccaccaacatcctccaaaaccat 25350870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 97 - 241
Target Start/End: Original strand, 26514226 - 26514370
Alignment:
Q  97 atcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagca 196  Q
    |||||||||||||||||| |||  ||| ||||||||   |||  |||||||||||| |||||||| |||||||||||||||||||| |  || |||| ||    
T  26514226 atcccatccctaatcttcgctatctccctccaccaaatagaaccactccggcccccaacctccaaactccctgcctcctcaccataccgagccaccaaca 26514325  T
Q  197 ccctataccaaaaaccatctctatctaccaacattcgccaacacc 241  Q
    | |||||||| || || |||||||| |||| ||| | ||||||||    
T  26514326 ctctataccagaacccctctctatccaccagcatcctccaacacc 26514370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 243
Target Start/End: Original strand, 13086044 - 13086187
Alignment:
Q  100 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccc 199  Q
    ||||| |||||| || |||| |||||||||||| | |||  |||||||||||| ||||||||||||||| |  |||| ||||| |  || || || || |    
T  13086044 ccatctctaatcctccctacctccttccaccaaaaagaacaactccggcccccaacctccaacctccctccaacctcgccataacgggcgactagaacac 13086143  T
Q  200 tataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    ||||||| |||||  |||||||||||||||| | ||||||||||    
T  13086144 tataccacaaacctactctatctaccaacatcctccaacaccat 13086187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 126 - 211
Target Start/End: Original strand, 10362664 - 10362749
Alignment:
Q  126 ccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctataccaaaaac 211  Q
    ||||||||| |||  |||||||||||| ||||||||||||||  ||||||||||||||| ||| ||||  ||||||||||| ||||    
T  10362664 ccaccaagaagaaccactccggccccccacctccaacctcccatcctcctcaccatatctcgccaccaaaaccctataccataaac 10362749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 239
Target Start/End: Complemental strand, 7956299 - 7956167
Alignment:
Q  106 ctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctatacc 205  Q
    ||||||||||| || | |||||||||  | |||  ||||||||| | | |||||||||||||  |||||||||||||||  || |||| ||| | |||||    
T  7956299 ctaatcttcacaaccttcttccaccataaagaaccactccggcctcat-cctccaacctcccgtcctcctcaccatatctagccaccaacactcgatacc 7956201  T
Q  206 aaaaaccatctctatctaccaacattcgccaaca 239  Q
    ||| |||||||||||| || ||||| ||||||||    
T  7956200 aaagaccatctctatcaactaacatacgccaaca 7956167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 206
Target Start/End: Original strand, 29056045 - 29056130
Alignment:
Q  121 tccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctatacca 206  Q
    ||||||||||| || |||  |||||||||||| ||| ||||||||||  ||||||||||||| |  ||||||| ||||||||||||    
T  29056045 tccttccaccacgaagaaacactccggcccccaaccgccaacctcccatcctcctcaccataacgtgctaccaacaccctatacca 29056130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 242
Target Start/End: Complemental strand, 10920041 - 10919957
Alignment:
Q  158 ccaacctccctgcctcctcaccatatcacgctaccagcaccctataccaaaaaccatctctatctaccaacattcgccaacacca 242  Q
    |||||||||| |||||||||||||| |  || |||| ||||||||||||||| ||  ||||||| |||||||| | |||||||||    
T  10920041 ccaacctccccgcctcctcaccatacctagcaaccaacaccctataccaaaacccccctctatcaaccaacatcctccaacacca 10919957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 140 - 243
Target Start/End: Complemental strand, 1104542 - 1104439
Alignment:
Q  140 tactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctataccaaaaaccatctctatctaccaacattcgccaaca 239  Q
    ||||| ||||||| ||| |||||||| |||||||||||||||| |  || |||| |||||||||||| ||||||  ||||| ||| ||||  | ||||||    
T  1104542 tactcaggcccccaaccaccaacctcactgcctcctcaccataacgagcaaccatcaccctataccacaaaccacatctatttactaacaaactccaaca 1104443  T
Q  240 ccat 243  Q
    ||||    
T  1104442 ccat 1104439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 32
Target Start/End: Complemental strand, 14686742 - 14686711
Alignment:
Q  1 tcaccaagccacctgtcataccaaaagtaagt 32  Q
    ||||||||||||||||||||||||||||||||    
T  14686742 tcaccaagccacctgtcataccaaaagtaagt 14686711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 243
Target Start/End: Original strand, 34434823 - 34434908
Alignment:
Q  158 ccaacctccctgcctcctcaccatatcacgctaccagcaccctataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    ||||||||||  ||||||||||||||| ||| ||||  ||||||||||| | || |   || ||||||||||| ||||||||||||    
T  34434823 ccaacctcccatcctcctcaccatatctcgccaccaaaaccctataccatatactactcctctctaccaacatccgccaacaccat 34434908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 167
Target Start/End: Complemental strand, 11060494 - 11060430
Alignment:
Q  103 tccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccc 167  Q
    |||||||||  | |||| ||| |||||||||| |||  |||||||||||| ||||||||||||||    
T  11060494 tccctaatccgccctacctccctccaccaagaagaacaactccggcccccaacctccaacctccc 11060430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 13938221 - 13938285
Alignment:
Q  97 atcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaa 161  Q
    |||||||| |||||| ||||||  |||| |||||||||||||  ||||||||||||  |||||||    
T  13938221 atcccatctctaatcctcactatctcctgccaccaagatgaacaactccggcccccatcctccaa 13938285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 167
Target Start/End: Complemental strand, 17078826 - 17078758
Alignment:
Q  99 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccc 167  Q
    |||||| ||||||  | |||| ||| |||||||||| |||  |||||||||||| ||||||||||||||    
T  17078826 cccatctctaatccgccctacctccctccaccaagaagaacaactccggcccccaacctccaacctccc 17078758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 167
Target Start/End: Complemental strand, 18051085 - 18051017
Alignment:
Q  99 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccc 167  Q
    |||||| ||||||  | |||| ||| |||||||||| |||  |||||||||||| ||||||||||||||    
T  18051085 cccatctctaatccgccctacctccctccaccaagaagaacaactccggcccccaacctccaacctccc 18051017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 227; Significance: 1e-125; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 476619 - 476861
Alignment:
Q  1 tcaccaagccacctgtcataccaaaagtaagtagacacaccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacccatcc 100  Q
    |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  476619 tcaccaagccacctgtcataccaaaagtaagtagacacgccattacctacccttctcgaaacccgctccgcaaaccaactcccctcagcgtcacccatcc 476718  T
Q  101 catccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccct 200  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||    
T  476719 cgtccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcgctaccagcaccct 476818  T
Q  201 ataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  476819 ataccaaaaaccatctctatctaccaacattcgccaacaccat 476861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 56 - 243
Target Start/End: Original strand, 380362 - 380549
Alignment:
Q  56 tcgaaacccgctccgcaaaccaactcccctcatcgtcacccatcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctac 155  Q
    |||| |||| |||||||||||| | ||||||| | || || | ||| |||||||||||||||| ||||||| ||||||| |||  |||||||||||| ||    
T  380362 tcgacaccctctccgcaaaccagcccccctcaccttctcctaacccgtccctaatcttcactatttccttctaccaagaagaaccactccggcccccaac 380461  T
Q  156 ctccaacctccctgcctcctcaccatatcacgctaccagcaccctataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    ||||||||||||||||||||||||||| | |||| |||||||||||||||| |||||||||||||| |||||||| ||||||||||||    
T  380462 ctccaacctccctgcctcctcaccataccgcgcttccagcaccctataccagaaaccatctctatccaccaacatccgccaacaccat 380549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 99 - 243
Target Start/End: Original strand, 42259784 - 42259928
Alignment:
Q  99 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcacc 198  Q
    ||||||||||||||||||||| ||| |||||||||| |||| |||||||| ||| |||||||| ||||| ||| |||||| ||||| | | || | ||||    
T  42259784 cccatccctaatcttcactacctccctccaccaagaagaagcactccggctcccaacctccaaactcccagccacctcacgatatctctccacaaacacc 42259883  T
Q  199 ctataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
     |||||||||| ||| ||||||| |||||||| || |||||||||    
T  42259884 ttataccaaaacccacctctatccaccaacatccgtcaacaccat 42259928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 99 - 184
Target Start/End: Complemental strand, 22176462 - 22176377
Alignment:
Q  99 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatc 184  Q
    |||||||||||||||| ||| ||||||||||||||| ||   |||||||||||| ||| |||||||||||||||||||||||||||    
T  22176462 cccatccctaatcttcgctatttccttccaccaagaagagacactccggcccccaaccgccaacctccctgcctcctcaccatatc 22176377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 99 - 219
Target Start/End: Complemental strand, 42039341 - 42039221
Alignment:
Q  99 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcacc 198  Q
    ||||||||||||||||| ||  ||| ||||||||||  ||| ||||||||||||  ||||||||| |||  || |||||||||||  ||| |||| ||||    
T  42039341 cccatccctaatcttcattaactccctccaccaagaaaaagcactccggcccccatcctccaaccgcccaaccacctcaccatatttcgccaccaacacc 42039242  T
Q  199 ctataccaaaaaccatctcta 219  Q
    ||||||||||| ||| |||||    
T  42039241 ctataccaaaacccacctcta 42039221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 29572465 - 29572425
Alignment:
Q  142 ctccggccccctacctccaacctccctgcctcctcaccata 182  Q
    ||||||||||| |||||||||||| ||||||||||||||||    
T  29572465 ctccggcccccaacctccaacctctctgcctcctcaccata 29572425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 29573842 - 29573802
Alignment:
Q  142 ctccggccccctacctccaacctccctgcctcctcaccata 182  Q
    ||||||||||| |||||||||||| ||||||||||||||||    
T  29573842 ctccggcccccaacctccaacctctctgcctcctcaccata 29573802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 29575219 - 29575179
Alignment:
Q  142 ctccggccccctacctccaacctccctgcctcctcaccata 182  Q
    ||||||||||| |||||||||||| ||||||||||||||||    
T  29575219 ctccggcccccaacctccaacctctctgcctcctcaccata 29575179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 29576596 - 29576556
Alignment:
Q  142 ctccggccccctacctccaacctccctgcctcctcaccata 182  Q
    ||||||||||| |||||||||||| ||||||||||||||||    
T  29576596 ctccggcccccaacctccaacctctctgcctcctcaccata 29576556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 29577973 - 29577933
Alignment:
Q  142 ctccggccccctacctccaacctccctgcctcctcaccata 182  Q
    ||||||||||| |||||||||||| ||||||||||||||||    
T  29577973 ctccggcccccaacctccaacctctctgcctcctcaccata 29577933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 182
Target Start/End: Complemental strand, 29579350 - 29579310
Alignment:
Q  142 ctccggccccctacctccaacctccctgcctcctcaccata 182  Q
    ||||||||||| |||||||||||| ||||||||||||||||    
T  29579350 ctccggcccccaacctccaacctctctgcctcctcaccata 29579310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 142 - 206
Target Start/End: Original strand, 41590643 - 41590707
Alignment:
Q  142 ctccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctatacca 206  Q
    ||||||||||| ||| ||||||||||  ||||||||||||| | ||| |||| ||||||||||||    
T  41590643 ctccggcccccaaccgccaacctcccatcctcctcaccatacctcgccaccaacaccctatacca 41590707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 142 - 211
Target Start/End: Complemental strand, 4297902 - 4297833
Alignment:
Q  142 ctccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctataccaaaaac 211  Q
    |||||| |||| ||| ||||||||||  ||||||||||||| | ||| |||| |||||||||||| ||||    
T  4297902 ctccgggccccaaccgccaacctcccatcctcctcaccatacctcgccaccaacaccctataccataaac 4297833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 189 - 230
Target Start/End: Original strand, 22437810 - 22437851
Alignment:
Q  189 taccagcaccctataccaaaaaccatctctatctaccaacat 230  Q
    ||||| |||||||||||| ||||||||||||||||| |||||    
T  22437810 taccaacaccctataccacaaaccatctctatctactaacat 22437851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 167
Target Start/End: Complemental strand, 19513101 - 19513033
Alignment:
Q  99 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccc 167  Q
    |||||| | |||| || |||| ||| |||||||||| |||  |||||||||||| ||||||||||||||    
T  19513101 cccatctcgaatcctccctacctccctccaccaagaagaacaactccggccccccacctccaacctccc 19513033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 161
Target Start/End: Original strand, 33170160 - 33170224
Alignment:
Q  97 atcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaa 161  Q
    ||||||||||||||| ||||||  |||  |||||||||||||  ||||||||||||  |||||||    
T  33170160 atcccatccctaatcctcactatctcccgccaccaagatgaacaactccggcccccatcctccaa 33170224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0043 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: scaffold0043
Description:

Target: scaffold0043; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 34343 - 34103
Alignment:
Q  1 tcaccaagccacctgtcataccaaaagtaagtagacacaccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacccatcc 100  Q
    |||||||||||||||||||||||||||||||||||||| ||||||||||  |||||||||||||||||||||||||||||||||||||||||||||||||    
T  34343 tcaccaagccacctgtcataccaaaagtaagtagacacgccattacctattcttctcgaaacccgctccgcaaaccaactcccctcatcgtcacccatcc 34244  T
Q  101 catccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccct 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||    
T  34243 catccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgtctcctcaccatatctcgctaccagcaccct 34144  T
Q  201 ataccaaaaaccatctctatctaccaacattcgccaacacc 241  Q
    |||||||||||||||||| ||||||||||||||||||||||    
T  34143 ataccaaaaaccatctctctctaccaacattcgccaacacc 34103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 187; Significance: 1e-101; HSPs: 20)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 31675337 - 31675579
Alignment:
Q  1 tcaccaagccacctgtcataccaaaagtaagtagacacaccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacccatcc 100  Q
    |||||||||||||| ||||||||||||||||||||| | |||||||||||| | ||||||||||||||| |||||||||||||||||||  |||||||||    
T  31675337 tcaccaagccacctatcataccaaaagtaagtagacgcgccattacctaccttcctcgaaacccgctcctcaaaccaactcccctcatctacacccatcc 31675436  T
Q  101 catccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccct 200  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||    
T  31675437 cgtccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcaccaccagcaccct 31675536  T
Q  201 ataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    ||||||||||||| ||||||| |||||||||||||||||||||    
T  31675537 ataccaaaaaccacctctatccaccaacattcgccaacaccat 31675579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 31921085 - 31920843
Alignment:
Q  1 tcaccaagccacctgtcataccaaaagtaagtagacacaccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacccatcc 100  Q
    |||||||||||||| ||||||||||||||||||||| | |||||||||||| | |||||||||| |||| |||||||||||||||||||  |||||||||    
T  31921085 tcaccaagccacctatcataccaaaagtaagtagacgcgccattacctaccttcctcgaaacccactcctcaaaccaactcccctcatctacacccatcc 31920986  T
Q  101 catccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccct 200  Q
    | |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||||||||||    
T  31920985 cgtccctaatcttcactacttccttctaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatctcaccaccagcaccct 31920886  T
Q  201 ataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    ||||||||||||| ||||||| |||||||||||||||||||||    
T  31920885 ataccaaaaaccacctctatccaccaacattcgccaacaccat 31920843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 100 - 243
Target Start/End: Original strand, 19875748 - 19875891
Alignment:
Q  100 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccc 199  Q
    |||||| |||||||| |||| |||||||||||||||||   |||||||||||| ||||||||||||| ||||||||||||||||| ||| |||| |||||    
T  19875748 ccatccttaatcttcgctacctccttccaccaagatgatacactccggcccccaacctccaacctccttgcctcctcaccatatctcgccaccaacaccc 19875847  T
Q  200 tataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    |||||||||| ||| ||||||||| |||||  ||||||||||||    
T  19875848 tataccaaaacccacctctatctatcaacaaccgccaacaccat 19875891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 141 - 243
Target Start/End: Complemental strand, 25024438 - 25024336
Alignment:
Q  141 actccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctataccaaaaaccatctctatctaccaacattcgccaacac 240  Q
    |||||| ||||| ||| |||||||||||||||||||||||||||  ||| ||| ||||||||||||||||||||||||||| || ||||| | |||||||    
T  25024438 actccgacccccaaccgccaacctccctgcctcctcaccatatctagcttccaacaccctataccaaaaaccatctctatccactaacatcctccaacac 25024339  T
Q  241 cat 243  Q
    |||    
T  25024338 cat 25024336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 100 - 243
Target Start/End: Original strand, 53941808 - 53941951
Alignment:
Q  100 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccc 199  Q
    ||||||||||||||| |||  ||| ||||| || | |||  |||||||||||||||| |||||||||| |||||||||||||| | ||| |||| ||||     
T  53941808 ccatccctaatcttcgctatctccctccactaaaaagaatcactccggccccctaccaccaacctcccagcctcctcaccataccgcgccaccaacacct 53941907  T
Q  200 tataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    ||||||| || || |||||||| |||||||| | ||||||||||    
T  53941908 tataccagaacccctctctatccaccaacatcctccaacaccat 53941951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 99 - 243
Target Start/End: Complemental strand, 40513360 - 40513216
Alignment:
Q  99 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcacc 198  Q
    |||||||||||||||  ||| ||||  |||||| | ||||  ||||| |||||| |||||||||| ||| |||  ||||||||| |  |||||||| |||    
T  40513360 cccatccctaatctttgctaattcccgccaccacggtgaaacactcctgcccccaacctccaaccgcccagccgtctcaccataccgagctaccaggacc 40513261  T
Q  199 ctataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    |||||||| |||||| ||||||| |||||||| ||||||||||||    
T  40513260 ctataccataaaccacctctatccaccaacatccgccaacaccat 40513216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 100 - 243
Target Start/End: Original strand, 55367115 - 55367258
Alignment:
Q  100 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccc 199  Q
    ||||| |||||||||  ||  ||| |||||||| | |||  ||||||||||||||||||||||||| |||||||||||||||||| ||||| ||  |||     
T  55367115 ccatctctaatcttcgttatctccatccaccaaaaggaatcactccggccccctacctccaacctctctgcctcctcaccatatctcgctaacaaaacct 55367214  T
Q  200 tataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    ||||||| || ||| ||||||| || ||||| | ||||||||||    
T  55367215 tataccacaacccacctctatcaactaacatcctccaacaccat 55367258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 126 - 211
Target Start/End: Complemental strand, 52250733 - 52250648
Alignment:
Q  126 ccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctataccaaaaac 211  Q
    ||||||||| |||  |||||||||||| ||||||||||||||  ||||||||||||||| ||| |||| |||||||||||| ||||    
T  52250733 ccaccaagaagaaccactccggcccccaacctccaacctcccatcctcctcaccatatctcgccaccaacaccctataccataaac 52250648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 243
Target Start/End: Original strand, 14307713 - 14307856
Alignment:
Q  100 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccc 199  Q
    ||||||||||||||| |||  ||| ||||||||| |||   |||||||||||| | |||||| |||||||||||||||||||||| |||  |||  || |    
T  14307713 ccatccctaatcttcgctatctccctccaccaaggtgacacactccggcccccaaactccaatctccctgcctcctcaccatatctcgccgccaatactc 14307812  T
Q  200 tataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    || |||| || ||  ||||||| || ||||||| ||||||||||    
T  14307813 tacaccagaaccccgctctatccacgaacattctccaacaccat 14307856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 141 - 243
Target Start/End: Original strand, 48930272 - 48930374
Alignment:
Q  141 actccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctataccaaaaaccatctctatctaccaacattcgccaacac 240  Q
    ||||| |||||| ||||||||||||||  ||||||||||||||| ||| ||||  ||||||||||| |||| ||  || ||||||||||  |||||||||    
T  48930272 actccagcccccaacctccaacctcccatcctcctcaccatatctcgccaccaaaaccctataccataaactattcctctctaccaacagccgccaacac 48930371  T
Q  241 cat 243  Q
    |||    
T  48930372 cat 48930374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 243
Target Start/End: Original strand, 34829904 - 34830041
Alignment:
Q  99 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcacc 198  Q
    |||||||||||||||| |||||||   |||||||||||||  ||||||| |||| |||||| | ||       | ||||||||||| |||| |||| |||    
T  34829904 cccatccctaatcttcgctacttcacaccaccaagatgaaacactccgggccccaacctcccatct-------ttctcaccatatcgcgctgccagtacc 34829996  T
Q  199 ctataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    |||||||| || ||| || |||| |||||||| ||||||||||||    
T  34829997 ctataccataacccaactatatccaccaacatccgccaacaccat 34830041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 243
Target Start/End: Complemental strand, 14864101 - 14863957
Alignment:
Q  99 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcacc 198  Q
    |||||| | |||| || |||| ||| |||||||||| |||  |||||||||||| ||||||||||||||  || |||| ||||| || || || || ||     
T  14864101 cccatctcgaatcctccctacctccctccaccaagaagaacaactccggccccccacctccaacctcccacccacctcgccataacaggcgacaagaaca 14864002  T
Q  199 ctataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    |||||||| |||||  || |||| |||||||| | ||||||||||    
T  14864001 ctataccataaacctactttatcgaccaacatcctccaacaccat 14863957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 211
Target Start/End: Original strand, 6825369 - 6825438
Alignment:
Q  142 ctccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctataccaaaaac 211  Q
    ||||||||||| ||| ||||||||||  ||||||||||||| | ||| |||| |||||||||||| ||||    
T  6825369 ctccggcccccaaccgccaacctcccatcctcctcaccataccgcgccaccaacaccctataccataaac 6825438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 103 - 180
Target Start/End: Original strand, 35537276 - 35537353
Alignment:
Q  103 tccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcacca 180  Q
    ||||||||| |||| || ||| |||||||| | |||  |||||||||||| |||||||| |||| |||||||||||||    
T  35537276 tccctaatcctcaccacctccctccaccaataagaatcactccggcccccaacctccaatctccttgcctcctcacca 35537353  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 103 - 239
Target Start/End: Original strand, 46190000 - 46190136
Alignment:
Q  103 tccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctat 202  Q
    |||||||||||| |||| ||| |||| |||   |||  |||||||||||| |||||||||| | | |||||||||||||| | ||| ||||  ||||| |    
T  46190000 tccctaatcttcgctacctccctccatcaattagaaacactccggcccccaacctccaaccgctcagcctcctcaccatacctcgccaccaataccctgt 46190099  T
Q  203 accaaaaaccatctctatctaccaacattcgccaaca 239  Q
    |||| |||||  || |||| |||||||  ||||||||    
T  46190100 accacaaacctcctttatccaccaacaaccgccaaca 46190136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 121 - 203
Target Start/End: Original strand, 31547897 - 31547980
Alignment:
Q  121 tccttccaccaagatgaagtactccggcccccta-cctccaacctccctgcctcctcaccatatcacgctaccagcaccctata 203  Q
    ||||||||||| || |||  |||||||||||| | || ||||||||||  ||||||||||||| | |||||||| |||||||||    
T  31547897 tccttccaccacgaagaaacactccggccccccaaccaccaacctcccatcctcctcaccataacgcgctaccaacaccctata 31547980  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 190 - 243
Target Start/End: Original strand, 42807264 - 42807317
Alignment:
Q  190 accagcaccctataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    |||| ||||||| |||| |||| ||| |||||||||||||| ||||||||||||    
T  42807264 accaacaccctaaaccataaactatccctatctaccaacatccgccaacaccat 42807317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 206
Target Start/End: Original strand, 44888430 - 44888515
Alignment:
Q  121 tccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctatacca 206  Q
    ||||||||||| || |||  |||||| ||| | ||| ||||||||||  ||||||||||||| | ||| |||| ||||||||||||    
T  44888430 tccttccaccacgaagaaacactccgaccctcaaccaccaacctcccatcctcctcaccataacgcgccaccaacaccctatacca 44888515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 97 - 161
Target Start/End: Complemental strand, 962801 - 962737
Alignment:
Q  97 atcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaa 161  Q
    ||||||||||||||| ||||||  ||| ||||||||||||||  |||||| |||||  |||||||    
T  962801 atcccatccctaatcctcactatctccctccaccaagatgaacaactccgacccccatcctccaa 962737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 34829825 - 34829857
Alignment:
Q  1 tcaccaagccacctgtcataccaaaagtaagta 33  Q
    ||||||||||||||||||||||||||| |||||    
T  34829825 tcaccaagccacctgtcataccaaaagaaagta 34829857  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 5e-40; HSPs: 18)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 100 - 243
Target Start/End: Complemental strand, 27218757 - 27218614
Alignment:
Q  100 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccc 199  Q
    ||||||||||||||| |||| |||||||||||||||||   |||||||||||| ||| ||||||||||||||||||||||||||| ||| |||| |||||    
T  27218757 ccatccctaatcttcgctacctccttccaccaagatgatacactccggcccccaaccgccaacctccctgcctcctcaccatatctcgccaccaacaccc 27218658  T
Q  200 tataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    |||||||||| ||| ||||||||| |||||  ||||||||||||    
T  27218657 tataccaaaatccacctctatctatcaacaaccgccaacaccat 27218614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 103 - 243
Target Start/End: Complemental strand, 19545034 - 19544894
Alignment:
Q  103 tccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctat 202  Q
    ||||||||||||||||  |||||||||||  | |||  |||||||||||| |||||||||||| ||||||||||||||||||  |   ||| ||||||||    
T  19545034 tccctaatcttcactagatccttccaccacaaagaaccactccggcccccaacctccaacctctctgcctcctcaccatatcgtgtcgccaacaccctat 19544935  T
Q  203 accaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    ||||||| ||||||||||| |||||||| ||||||||||||    
T  19544934 accaaaacccatctctatccaccaacatccgccaacaccat 19544894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 56 - 230
Target Start/End: Original strand, 20349425 - 20349598
Alignment:
Q  56 tcgaaacccgctccgcaaaccaactcccctcatcgtcacccatcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctac 155  Q
    |||| |||| ||| |||||||||| | |||||   || || |||||||||||||||||| |||  ||| ||||||||   |||  ||||| | |||||||    
T  20349425 tcgacaccctctctgcaaaccaaccctcctcagaatcgcctatcccatccctaatcttcgctatctccctccaccaaagagaaccactcctg-cccctac 20349523  T
Q  156 ctccaacctccctgcctcctcaccatatcacgctaccagcaccctataccaaaaaccatctctatctaccaacat 230  Q
    ||||||||||||||||||||||||||| |  || |||| |||||||||||| || |  |||||||||||||||||    
T  20349524 ctccaacctccctgcctcctcaccataccgagccaccaacaccctataccataacctttctctatctaccaacat 20349598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 103 - 243
Target Start/End: Original strand, 34103985 - 34104125
Alignment:
Q  103 tccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctat 202  Q
    ||||||||||||||||  |||||||||||| | |||  ||||| ||||||  |||||||||||| |||||||||||| || | ||| |||| ||||||||    
T  34103985 tccctaatcttcactaaatccttccaccaacaagaaccactccagcccccatcctccaacctccttgcctcctcaccgtaacgcgccaccaacaccctat 34104084  T
Q  203 accaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    ||||||| || ||| |||| | |||||| | ||| ||||||    
T  34104085 accaaaacccctctttatccatcaacatcctccagcaccat 34104125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 242
Target Start/End: Complemental strand, 17504195 - 17504052
Alignment:
Q  99 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcacc 198  Q
    |||||| ||||||||||  || |||||||||||  | |||  ||||||||||||  |||||||||||||  |||||||||| |||| ||| |||| |||     
T  17504195 cccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccgtatctcgccaccaacact 17504096  T
Q  199 ctataccaaaaaccatctctatctaccaacattcgccaacacca 242  Q
    | |||||||| |||||||||||| || |||||  ||||||||||    
T  17504095 cgataccaaagaccatctctatcaactaacatatgccaacacca 17504052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 99 - 242
Target Start/End: Original strand, 17549019 - 17549162
Alignment:
Q  99 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcacc 198  Q
    |||||| ||||||||||  || |||||||||||  | |||  ||||||||||||  |||||||||||||  |||||||||| |||| ||| |||| |||     
T  17549019 cccatctctaatcttcataacctccttccaccacaaagaaccactccggcccccatcctccaacctcccatcctcctcaccgtatctcgccaccaacact 17549118  T
Q  199 ctataccaaaaaccatctctatctaccaacattcgccaacacca 242  Q
    | |||||||| |||||||||||| || |||||  ||||||||||    
T  17549119 cgataccaaagaccatctctatcaactaacatatgccaacacca 17549162  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 141 - 243
Target Start/End: Original strand, 11341342 - 11341444
Alignment:
Q  141 actccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctataccaaaaaccatctctatctaccaacattcgccaacac 240  Q
    |||||||||||| ||||||||||||||||||||||||||||| |  ||  ||| ||||||||||||||| || | |||||  |||||||| | |||||||    
T  11341342 actccggcccccgacctccaacctccctgcctcctcaccatacctagcagccaacaccctataccaaaatccctatctataaaccaacatcctccaacac 11341441  T
Q  241 cat 243  Q
    |||    
T  11341442 cat 11341444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 121 - 206
Target Start/End: Original strand, 17056055 - 17056140
Alignment:
Q  121 tccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctatacca 206  Q
    ||||||||||| || |||  |||||||||||| ||| ||||||||||  ||||||||||||| | ||| |||| ||||||||||||    
T  17056055 tccttccaccacgaagaaacactccggcccccaaccaccaacctcccatcctcctcaccataacgcgccaccaacaccctatacca 17056140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 158 - 206
Target Start/End: Complemental strand, 8752973 - 8752925
Alignment:
Q  158 ccaacctccctgcctcctcaccatatcacgctaccagcaccctatacca 206  Q
    |||||||||| |||||||||||||||| ||| |||||||||||||||||    
T  8752973 ccaacctcccagcctcctcaccatatctcgccaccagcaccctatacca 8752925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 179
Target Start/End: Original strand, 23887588 - 23887667
Alignment:
Q  99 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcacc 179  Q
    |||||||||||||||| |||  ||| |||||||||| |||  |||||| ||||| ||||||||||| ||||||||||||||    
T  23887588 cccatccctaatcttcgctatctccctccaccaagaagaaacactccgacccccaacctccaacct-cctgcctcctcacc 23887667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 99 - 179
Target Start/End: Original strand, 23898764 - 23898843
Alignment:
Q  99 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcacc 179  Q
    |||||||||||||||| |||  ||| |||||||||| |||  |||||| ||||| ||||||||||| ||||||||||||||    
T  23898764 cccatccctaatcttcgctatctccctccaccaagaagaaacactccgacccccaacctccaacct-cctgcctcctcacc 23898843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 206
Target Start/End: Complemental strand, 25018927 - 25018847
Alignment:
Q  126 ccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctatacca 206  Q
    ||||||||| |||  ||| || ||||| |||||||||||||| ||||||||||||||||  || |||| ||||||||||||    
T  25018927 ccaccaagaagaaccacttcgacccccaacctccaacctcccagcctcctcaccatatcttgccaccaacaccctatacca 25018847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 116 - 206
Target Start/End: Complemental strand, 22819336 - 22819246
Alignment:
Q  116 ctacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctatacca 206  Q
    |||| |||||||||||  | |||  |||||||||||| ||| |||||||||   ||||||||||||| | |||||||| ||||||||||||    
T  22819336 ctacctccttccaccacaaagaaacactccggcccccaaccgccaacctcctgtcctcctcaccataacgcgctaccaacaccctatacca 22819246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 243
Target Start/End: Complemental strand, 13553778 - 13553676
Alignment:
Q  141 actccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctataccaaaaaccatctctatctaccaacattcgccaacac 240  Q
    |||||||||||| ||||||||||||||| |  |||| ||||| |  || || || || |||||||| || ||  |||||||||||||||| | |||||||    
T  13553778 actccggcccccaacctccaacctccctccaacctcgccataacgggcgactagaacactataccacaaccctactctatctaccaacatcctccaacac 13553679  T
Q  241 cat 243  Q
    |||    
T  13553678 cat 13553676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 159 - 229
Target Start/End: Original strand, 20918524 - 20918594
Alignment:
Q  159 caacctccctgcctcctcaccatatcacgctaccagcaccctataccaaaaaccatctctatctaccaaca 229  Q
    |||||||||||||| ||||||||| |  | ||| |||||||||||||| |||||  |||||||||| ||||    
T  20918524 caacctccctgccttctcaccataacgagttactagcaccctataccacaaacctcctctatctactaaca 20918594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 158 - 243
Target Start/End: Complemental strand, 23054548 - 23054463
Alignment:
Q  158 ccaacctccctgcctcctcaccatatcacgctaccagcaccctataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    |||||||||||||||||||||||| ||  ||  ||| ||||||||||||||| ||  ||||||| || ||||| | | ||||||||    
T  23054548 ccaacctccctgcctcctcaccatgtctagccgccaacaccctataccaaaaccctcctctatcaactaacatcctctaacaccat 23054463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 151 - 204
Target Start/End: Complemental strand, 39658972 - 39658919
Alignment:
Q  151 cctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctatac 204  Q
    |||||| |||||||||| |||||||||||||| | ||| |||| ||||||||||    
T  39658972 cctacccccaacctcccagcctcctcaccataccgcgccaccaacaccctatac 39658919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 211
Target Start/End: Complemental strand, 41805323 - 41805282
Alignment:
Q  170 cctcctcaccatatcacgctaccagcaccctataccaaaaac 211  Q
    ||||||||||||||| ||| |||| |||||||||||||||||    
T  41805323 cctcctcaccatatctcgccaccaacaccctataccaaaaac 41805282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 17)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 2071946 - 2072188
Alignment:
Q  1 tcaccaagccacctgtcataccaaaagtaagtagacacaccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacccatcc 100  Q
    ||||||| |||||||||| ||||||||||||||   | |||||  |||||| ||||||| |||| ||| |||||||| | ||||||  | ||||| | ||    
T  2071946 tcaccaacccacctgtcagaccaaaagtaagtatgtaaaccatcccctacctttctcgacaccctctctgcaaaccagcccccctcggcctcacctaccc 2072045  T
Q  101 catccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccct 200  Q
    | ||||||||||||||||  ||| |||||||  | |||  |||||| ||||| ||||| ||||||| ||||||||||||||||| ||| |||||||||||    
T  2072046 cgtccctaatcttcactaactccctccaccagcaagaaacactccgtcccccaacctctaacctccttgcctcctcaccatatctcgccaccagcaccct 2072145  T
Q  201 ataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    |||||| |  ||  ||||||| ||||||||  |||| ||||||    
T  2072146 ataccacatccctcctctatccaccaacatctgccatcaccat 2072188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 1 - 243
Target Start/End: Complemental strand, 43516482 - 43516240
Alignment:
Q  1 tcaccaagccacctgtcataccaaaagtaagtagacacaccattacctacccttctcgaaacccgctccgcaaaccaactcccctcatcgtcacccatcc 100  Q
    |||||||||||| ||||||||||||||||||||      ||||  |||||  || |||| |||| ||| |||||||| | ||||||  | || || | ||    
T  43516482 tcaccaagccacttgtcataccaaaagtaagtactagagccatctcctacttttttcgacaccctctctgcaaaccagcccccctctacatcgcctaccc 43516383  T
Q  101 catccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccct 200  Q
    |||||||||||||| ||||||||  |||||||||||||  ||||| |||||| |||||||||| ||| |||  ||||||||| | | |||| || |||||    
T  43516382 catccctaatcttcgctacttcccgccaccaagatgaaacactcctgcccccaacctccaaccgcccagccgtctcaccataccgcactactaggaccct 43516283  T
Q  201 ataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    |||||| |||||| |||||||  |||||||  |||||||||||    
T  43516282 ataccataaaccacctctatccgccaacatctgccaacaccat 43516240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 100 - 243
Target Start/End: Original strand, 9690927 - 9691070
Alignment:
Q  100 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccc 199  Q
    ||||||||||||||| |||  ||| ||||||||   |||  |||||||||||| |||||||||||||| ||||||||||||||||  ||||| |||||||    
T  9690927 ccatccctaatcttcgctatctccctccaccaatgagaaacactccggcccccaacctccaacctcccagcctcctcaccatatctagctactagcaccc 9691026  T
Q  200 tataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    |||||||||| |||  |||||| |||||||  | ||||||||||    
T  9691027 tataccaaaacccacatctatccaccaacaacctccaacaccat 9691070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 103 - 193
Target Start/End: Complemental strand, 52617497 - 52617407
Alignment:
Q  103 tccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctacca 193  Q
    |||||||||||| |||  ||| ||||||||||||||  ||||||||| |  |||||||||||| |||||||||||||||||| ||| ||||    
T  52617497 tccctaatcttcgctatctccctccaccaagatgaaacactccggcctctaacctccaacctctctgcctcctcaccatatctcgccacca 52617407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 103 - 242
Target Start/End: Complemental strand, 56337132 - 56336993
Alignment:
Q  103 tccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctat 202  Q
    |||||||||||| |||  ||| |||||||||  |||  |||||| ||||| |||||||||| ||| |||||||||||||| | |||  | || |||||||    
T  56337132 tccctaatcttcgctatctccctccaccaagtagaaacactccgacccccaacctccaaccgcccagcctcctcaccatacctcgccgctagtaccctat 56337033  T
Q  203 accaaaaaccatctctatctaccaacattcgccaacacca 242  Q
    |||| |||||  ||||||| |||||||  || ||||||||    
T  56337032 accacaaacctactctatccaccaacaaccgacaacacca 56336993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 99 - 217
Target Start/End: Original strand, 7098986 - 7099104
Alignment:
Q  99 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcacc 198  Q
    |||||||||||||||||| || ||||||||||||   |||  ||||||||||||  ||||||||||| |  |||||||||||||||  |||| ||  |||    
T  7098986 cccatccctaatcttcacaacctccttccaccaaatagaaccactccggcccccatcctccaacctctcatcctcctcaccatatctagctatcaaaacc 7099085  T
Q  199 ctataccaaaaaccatctc 217  Q
    | |||||| ||||| ||||    
T  7099086 cgataccacaaaccctctc 7099104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 206
Target Start/End: Original strand, 36183045 - 36183148
Alignment:
Q  103 tccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctat 202  Q
    |||||||||||| |||  ||| |||||||||  |||  |||||||||||| |||||||||| |||  |||||||||||||||  || || || |||||||    
T  36183045 tccctaatcttcgctatctccctccaccaagtagaaacactccggcccccaacctccaaccgcccatcctcctcaccatatcttgccacaagtaccctat 36183144  T
Q  203 acca 206  Q
    ||||    
T  36183145 acca 36183148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 147 - 211
Target Start/End: Original strand, 38296258 - 38296322
Alignment:
Q  147 gccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctataccaaaaac 211  Q
    |||||| ||||||||||||||   | |||||||||||| ||| |||| |||||||||||||||||    
T  38296258 gcccccaacctccaacctcccattcacctcaccatatctcgccaccaacaccctataccaaaaac 38296322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 167
Target Start/End: Complemental strand, 49925903 - 49925835
Alignment:
Q  99 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccc 167  Q
    |||||||||||||||| | || |||  ||||||||| |||  |||||||||||| ||||||||||||||    
T  49925903 cccatccctaatcttccccacctcccgccaccaagaagaacaactccggcccccaacctccaacctccc 49925835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 243
Target Start/End: Complemental strand, 55725374 - 55725198
Alignment:
Q  67 tccgcaaaccaactcccctcatcgtcacccatcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctcc 166  Q
    ||||||||||||| | || || | || || |||||||| || ||| | ||||  ||| |||||||||| |||  ||||||||||||  ||||||| |  |    
T  55725374 tccgcaaaccaaccctccccaccctcgcctatcccatctctgatcatgactatctccctccaccaagaagaacaactccggcccccatcctccaaaccac 55725275  T
Q  167 ctgcctcctcaccatatcacgctaccagcaccctataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    |  ||||| ||||||| |  || |||| |||||||||||| || |||||||||||||| ||||  | ||||||||||    
T  55725274 catcctccacaccatacctagccaccaacaccctataccataatccatctctatctactaacaacctccaacaccat 55725198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 3129528 - 3129481
Alignment:
Q  196 accctataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    ||||||||||| |||||| ||||||| |||||||| ||||||||||||    
T  3129528 accctataccacaaaccacctctatccaccaacatccgccaacaccat 3129481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 23873015 - 23872968
Alignment:
Q  196 accctataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    |||| |||||| |||||| |||||||||||||||| ||||||||||||    
T  23873015 acccgataccacaaaccacctctatctaccaacatccgccaacaccat 23872968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 141 - 243
Target Start/End: Original strand, 2365552 - 2365654
Alignment:
Q  141 actccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctataccaaaaaccatctctatctaccaacattcgccaacac 240  Q
    |||||| |||||  ||| |||||||||| ||||||||||||| |  || |||| |||||||||||| |||||  ||||||| || ||||| | ||| |||    
T  2365552 actccgacccccatccttcaacctccctacctcctcaccataacgagcaaccaacaccctataccataaacctcctctatcaactaacatcctccatcac 2365651  T
Q  241 cat 243  Q
    |||    
T  2365652 cat 2365654  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 121 - 206
Target Start/End: Original strand, 9777896 - 9777981
Alignment:
Q  121 tccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctatacca 206  Q
    |||||||||||  | |||  |||||||||||| |||  |||||||||  ||||||||| ||| | |||||||| ||||||||||||    
T  9777896 tccttccaccacaaagaaacactccggcccccaaccgtcaacctcccatcctcctcactataacgcgctaccaacaccctatacca 9777981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 141 - 182
Target Start/End: Original strand, 41382519 - 41382560
Alignment:
Q  141 actccggccccctacctccaacctccctgcctcctcaccata 182  Q
    |||||||||||| |||||||||| ||| ||||||||||||||    
T  41382519 actccggcccccaacctccaaccgcccagcctcctcaccata 41382560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 19114940 - 19115008
Alignment:
Q  99 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccc 167  Q
    ||||||||||||| || |||| |||  ||||||||| |||  |||| ||||||| ||||||||||||||    
T  19114940 cccatccctaatcctccctacctcccgccaccaagaagaacaactctggcccccaacctccaacctccc 19115008  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 145 - 229
Target Start/End: Complemental strand, 55464463 - 55464379
Alignment:
Q  145 cggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctataccaaaaaccatctctatctaccaaca 229  Q
    |||||||| ||  ||||||| |||||| ||||||| || |  || ||||| ||||||||||| |||||| |||||||||| ||||    
T  55464463 cggcccccaactgccaacctacctgccacctcaccgtaccgagcaaccagtaccctataccacaaaccacctctatctactaaca 55464379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 68; Significance: 2e-30; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 100 - 243
Target Start/End: Original strand, 6823916 - 6824059
Alignment:
Q  100 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccc 199  Q
    ||||||||||||||| |||| ||||||||||| | ||||  |||||||||||| |||||||||||||||||||||||| |||||| |||  |||  ||||    
T  6823916 ccatccctaatcttcgctacctccttccaccacggtgaaacactccggcccccaacctccaacctccctgcctcctcaacatatctcgccgccaaaaccc 6824015  T
Q  200 tataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    ||||||| || ||  ||||||| |||||||||| ||||||||||    
T  6824016 tataccagaaccccgctctatccaccaacattctccaacaccat 6824059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 99 - 243
Target Start/End: Original strand, 11196855 - 11196999
Alignment:
Q  99 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcacc 198  Q
    |||||||||||||||  ||||||||  |||||||||||||  |||||||||||| |||||||||| |||  |   ||||||||| | ||||||||| |||    
T  11196855 cccatccctaatcttagctacttcccgccaccaagatgaaacactccggcccccaacctccaaccgcccaactgtctcaccataccgcgctaccagaacc 11196954  T
Q  199 ctataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    |||||||| || ||  ||||||| |||| ||||||||||||||||    
T  11196955 ctataccataacccgcctctatccaccatcattcgccaacaccat 11196999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 126 - 211
Target Start/End: Original strand, 43310790 - 43310875
Alignment:
Q  126 ccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctataccaaaaac 211  Q
    ||||||||| |||  |||||||||||| ||||||||||||||  ||||||| ||||||| ||| |||| |||||||||||| ||||    
T  43310790 ccaccaagaagaaccactccggcccccaacctccaacctcccatcctcctcgccatatctcgccaccaacaccctataccacaaac 43310875  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 141 - 211
Target Start/End: Original strand, 26146761 - 26146831
Alignment:
Q  141 actccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctataccaaaaac 211  Q
    |||||||||||| ||||||||||||||  ||||||| ||||||| ||| |||| |||||||||||| ||||    
T  26146761 actccggcccccaacctccaacctcccatcctcctcgccatatctcgccaccaacaccctataccacaaac 26146831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 240
Target Start/End: Complemental strand, 9668641 - 9668501
Alignment:
Q  100 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccc 199  Q
    ||||| |||||| || | || ||| |||||||| | |||  |||||||||||| ||||||||||||||| |  |||| ||||| |  || || || || |    
T  9668641 ccatctctaatcctccccacctccctccaccaataagaacaactccggcccccaacctccaacctccctccaacctcgccataacgggcgactagaacac 9668542  T
Q  200 tataccaaaaaccatctctatctaccaacattcgccaacac 240  Q
    ||||||| || ||  |||||||||||||||| | |||||||    
T  9668541 tataccacaaccctactctatctaccaacatcctccaacac 9668501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 127 - 211
Target Start/End: Original strand, 10689087 - 10689170
Alignment:
Q  127 caccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctataccaaaaac 211  Q
    |||||||| |||  |||||||||||  |||||||||||||  ||||| |||||||||| | | |||| |||||||||||| ||||    
T  10689087 caccaagaagaaccactccggcccca-acctccaacctcctagcctcatcaccatatctcaccaccaacaccctataccataaac 10689170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 15018181 - 15018249
Alignment:
Q  99 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccc 167  Q
    ||||||||||||| || |||| |||  ||||||||| |||  ||| |||||||| ||||||||||||||    
T  15018181 cccatccctaatcctccctacctcccgccaccaagaagaacaacttcggcccccaacctccaacctccc 15018249  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 63; Significance: 2e-27; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 97 - 243
Target Start/End: Original strand, 25193590 - 25193736
Alignment:
Q  97 atcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagca 196  Q
    |||||||||||||||||| |||  ||| |||||||| | |||  ||||||||||||||||||||||||||| |||||||||||||| | | | |||| ||    
T  25193590 atcccatccctaatcttcgctatctccctccaccaataagaatcactccggccccctacctccaacctcccagcctcctcaccataccgcaccaccaaca 25193689  T
Q  197 ccctataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    ||| |||||| || ||||||||||| |||||||| | ||| ||||||    
T  25193690 cccgataccagaacccatctctatccaccaacatcctccagcaccat 25193736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 99 - 240
Target Start/End: Original strand, 6245593 - 6245727
Alignment:
Q  99 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcacc 198  Q
    |||||||||||||||||||||||||  |||||||||||||  ||||||||||       |||||||||| |||| ||||||||| || ||||| || |||    
T  6245593 cccatccctaatcttcactacttcccgccaccaagatgaaacactccggccc-------ccaacctcccagccttctcaccataacatgctacaagaacc 6245685  T
Q  199 ctataccaaaaaccatctctatctaccaacattcgccaacac 240  Q
    |||||||| |  ||| ||||||| |||||||| |||||||||    
T  6245686 ctataccagagcccacctctatccaccaacatccgccaacac 6245727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 92 - 243
Target Start/End: Complemental strand, 29721553 - 29721402
Alignment:
Q  92 cacccatcccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctac 191  Q
    |||| |||||||||||||||||| |||  ||| |||||||| | ||   ||||||||||||||||||||||||||| | |||||||||||||| ||| ||    
T  29721553 caccaatcccatccctaatcttcgctatctccctccaccaataagagacactccggccccctacctccaacctcccaggctcctcaccatatctcgccac 29721454  T
Q  192 cagcaccctataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    ||  ||||||||||| || ||| ||  ||| || ||||| | ||||||||||    
T  29721453 caaaaccctataccacaacccaccttgatcaactaacatcctccaacaccat 29721402  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 103 - 243
Target Start/End: Original strand, 15439632 - 15439765
Alignment:
Q  103 tccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctat 202  Q
    |||||||||||||||||||||||||||||| | |||   |||||||||||       |||||||||||||||||||||||   |||  ||| ||||||||    
T  15439632 tccctaatcttcactacttccttccaccaaaaagaaccgctccggccccc-------aacctccctgcctcctcaccatactgcgcccccaacaccctat 15439724  T
Q  203 accaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    |||| |||||||||||||  ||||||||  |||||||||||    
T  15439725 accataaaccatctctattcaccaacatctgccaacaccat 15439765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 103 - 243
Target Start/End: Original strand, 15530936 - 15531069
Alignment:
Q  103 tccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctat 202  Q
    |||||||||||||||||||||||||||||| | |||   |||||||||||       |||||||||||||||||||||||   |||  ||| ||||||||    
T  15530936 tccctaatcttcactacttccttccaccaaaaagaaccgctccggccccc-------aacctccctgcctcctcaccatactgcgcccccaacaccctat 15531028  T
Q  203 accaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    |||| |||||||||||||  ||||||||  |||||||||||    
T  15531029 accataaaccatctctattcaccaacatctgccaacaccat 15531069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 243
Target Start/End: Original strand, 36025026 - 36025169
Alignment:
Q  100 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccc 199  Q
    ||||||||||||||| |||  ||  ||||| |||  |||  ||||||| |||| |||||||||| ||| |||||||||||||||| ||| ||||  || |    
T  36025026 ccatccctaatcttcgctaactctctccacaaagtggaaacactccggtccccaacctccaaccgcccagcctcctcaccatatctcgccaccaaaactc 36025125  T
Q  200 tataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    ||||||| || ||  ||||||| |||||||| ||||||||||||    
T  36025126 tataccataaccctcctctatccaccaacatccgccaacaccat 36025169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 121 - 243
Target Start/End: Original strand, 18187672 - 18187794
Alignment:
Q  121 tccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctataccaaaaaccatctctat 220  Q
    |||||||||||  | |||  |||||||||| | ||  |||||| |||| ||||||||||||||||  | |||||| |||||||||| |||||| ||||||    
T  18187672 tccttccaccacaaagaaccactccggccctcaactgccaaccgccctacctcctcaccatatcaatcaaccagctccctataccacaaaccacctctat 18187771  T
Q  221 ctaccaacattcgccaacaccat 243  Q
    |||| |||| || ||||||||||    
T  18187772 ctactaacaatctccaacaccat 18187794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 103 - 239
Target Start/End: Complemental strand, 37165753 - 37165617
Alignment:
Q  103 tccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctat 202  Q
    |||||||||||| |||  ||| |||||||||  |||  |||||||||||| |||||||||| |||  ||||||| ||||||| ||| ||||| |||||||    
T  37165753 tccctaatcttcgctatctccctccaccaagtagaaacactccggcccccaacctccaaccgcccatcctcctcgccatatctcgccaccagtaccctat 37165654  T
Q  203 accaaaaaccatctctatctaccaacattcgccaaca 239  Q
    |||| || ||  ||||||| || ||||| | ||||||    
T  37165653 accacaagcctcctctatccactaacatcctccaaca 37165617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 242
Target Start/End: Original strand, 12341072 - 12341214
Alignment:
Q  100 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccc 199  Q
    ||||||||||||||| |||  | | ||||||||   |||  |||||||| ||| |||||||||| ||| |||||||||||||| | ||| ||||| ||||    
T  12341072 ccatccctaatcttcgctatctacctccaccaattagaaacactccggctcccaacctccaaccgcccagcctcctcaccatacctcgccaccagtaccc 12341171  T
Q  200 tataccaaaaaccatctctatctaccaacattcgccaacacca 242  Q
    || |||| || ||  ||||||| || ||||| | |||||||||    
T  12341172 taaaccacaaccctcctctatccactaacatcctccaacacca 12341214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 142 - 211
Target Start/End: Original strand, 36492928 - 36492997
Alignment:
Q  142 ctccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctataccaaaaac 211  Q
    ||||||||||| ||| ||||||||||  ||||||||||||| | ||| |||| |||||||||||| ||||    
T  36492928 ctccggcccccaaccgccaacctcccatcctcctcaccatacctcgccaccaacaccctataccataaac 36492997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 158 - 208
Target Start/End: Original strand, 12332411 - 12332461
Alignment:
Q  158 ccaacctccctgcctcctcaccatatcacgctaccagcaccctataccaaa 208  Q
    ||||||||||  ||||||||||||||| ||| |||| ||||||||||||||    
T  12332411 ccaacctcccatcctcctcaccatatctcgccaccaacaccctataccaaa 12332461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 6901413 - 6901481
Alignment:
Q  99 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccc 167  Q
    |||||| | |||| || ||||||||| ||||||||| |||  ||| |||||||| ||||||||||||||    
T  6901413 cccatcacgaatcctccctacttcctgccaccaagaagaaccacttcggcccccaacctccaacctccc 6901481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 103 - 167
Target Start/End: Original strand, 17659339 - 17659403
Alignment:
Q  103 tccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccc 167  Q
    |||||||||  | |||| ||| |||||||||| |||  |||||||||||| ||||||||||||||    
T  17659339 tccctaatccgccctacctccctccaccaagaagaacaactccggcccccaacctccaacctccc 17659403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 167
Target Start/End: Original strand, 36157658 - 36157726
Alignment:
Q  99 cccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccc 167  Q
    |||||| |||||| || | || ||| |||||||||| |||  |||||||||||| ||||||||||||||    
T  36157658 cccatctctaatcctcgccacctccctccaccaagaagaacaactccggcccccaacctccaacctccc 36157726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0189 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: scaffold0189
Description:

Target: scaffold0189; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 100 - 239
Target Start/End: Original strand, 6593 - 6732
Alignment:
Q  100 ccatccctaatcttcactacttccttccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccc 199  Q
    ||||||||||||||| |||| ||  ||||||| ||||||| ||||| |||||| ||||||||||||||||||||||||||||||| ||| || |  ||||    
T  6593 ccatccctaatcttcgctacctctctccaccatgatgaagcactccagcccccaacctccaacctccctgcctcctcaccatatctcgccactaaaaccc 6692  T
Q  200 tataccaaaaaccatctctatctaccaacattcgccaaca 239  Q
    ||||||| |||||  |||  ||||||||||| | ||||||    
T  6693 tataccacaaaccgcctcgctctaccaacatcctccaaca 6732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0048 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0048
Description:

Target: scaffold0048; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 158 - 243
Target Start/End: Complemental strand, 63876 - 63791
Alignment:
Q  158 ccaacctccctgcctcctcaccatatcacgctaccagcaccctataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    |||||||||||||||||||| |||||| ||| |||| ||| ||||||||||||  |||| | || | |||||| ||||||||||||    
T  63876 ccaacctccctgcctcctcatcatatctcgccaccaacactctataccaaaaattatctttgtccatcaacatccgccaacaccat 63791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 126 - 182
Target Start/End: Original strand, 67611 - 67667
Alignment:
Q  126 ccaccaagatgaagtactccggccccctacctccaacctccctgcctcctcaccata 182  Q
    ||||||||| |||  ||||| |||||| |||||||||||||||||||||||||||||    
T  67611 ccaccaagaagaaccactccagcccccaacctccaacctccctgcctcctcaccata 67667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0131 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0131
Description:

Target: scaffold0131; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 4095 - 4048
Alignment:
Q  196 accctataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    ||||||||||| |||||||||||||| |||||||| ||||||||||||    
T  4095 accctataccacaaaccatctctatccaccaacatccgccaacaccat 4048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0029 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0029
Description:

Target: scaffold0029; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 134393 - 134346
Alignment:
Q  196 accctataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    ||||||||||| |||||||||||||| |||||||| ||||||||||||    
T  134393 accctataccacaaaccatctctatccaccaacatccgccaacaccat 134346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 312220 - 312173
Alignment:
Q  196 accctataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    ||||||||||| |||||||||||||| |||||||| ||||||||||||    
T  312220 accctataccacaaaccatctctatccaccaacatccgccaacaccat 312173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 196 - 243
Target Start/End: Complemental strand, 327674 - 327627
Alignment:
Q  196 accctataccaaaaaccatctctatctaccaacattcgccaacaccat 243  Q
    ||||||||||| |||||||||||||| |||||||| ||||||||||||    
T  327674 accctataccacaaaccatctctatccaccaacatccgccaacaccat 327627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0061 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0061
Description:

Target: scaffold0061; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 211
Target Start/End: Original strand, 55208 - 55278
Alignment:
Q  141 actccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctataccaaaaac 211  Q
    |||||||||||| |||||||||||| |  ||||||| ||||||| ||| |||| |||||||||||| ||||    
T  55208 actccggcccccaacctccaacctctcatcctcctcgccatatctcgccaccaacaccctataccataaac 55278  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0017 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0017
Description:

Target: scaffold0017; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 141 - 211
Target Start/End: Complemental strand, 143426 - 143356
Alignment:
Q  141 actccggccccctacctccaacctccctgcctcctcaccatatcacgctaccagcaccctataccaaaaac 211  Q
    |||||||||||| |||||||||||| |  ||||||| ||||||| ||| |||| |||||||||||| ||||    
T  143426 actccggcccccaacctccaacctctcatcctcctcgccatatctcgccaccaacaccctataccataaac 143356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 2200 times since January 2019
Visitors: 2399