View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0200_1D_low_21 (Length: 236)
Name: NF0200_1D_low_21
Description: NF0200_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0200_1D_low_21 |
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Alignment Details
Target: chr5 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 24 - 200
Target Start/End: Complemental strand, 10980698 - 10980522
Alignment:
| Q |
24 |
ctaactatgagaaaaacatggggtgggatgttcctaagtgattttctacttgtataaaaaaggaagatacacttatttaaggatgatgattactaaccaa |
123 |
Q |
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| T |
10980698 |
ctaactatgagaaaaacatggggtgggatgttcctaagtgattttctacttgtataaaaaaggaagatacacttatttaaggatgatgattactaaccaa |
10980599 |
T |
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| Q |
124 |
gaaagaggtgaagagagcaaagaaagcaccaaaaccaaggatgatagagtatccaactccttgattaagcacaggtt |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
10980598 |
gaaagaggtgaagagagcaaagaaagcaccaaaaccaaggatgatagagtatccaactccttgattaagcacaggtt |
10980522 |
T |
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