View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0200_1D_low_22 (Length: 236)
Name: NF0200_1D_low_22
Description: NF0200_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0200_1D_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 179; Significance: 1e-96; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 21 - 223
Target Start/End: Complemental strand, 46240095 - 46239893
Alignment:
| Q |
21 |
atcctggatctggcctatcagcagtgatactcaccctgtttccagggcacactcttttaagttcagcagcatatctccttatcattgagtattgacaatc |
120 |
Q |
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|||||||||||||||||||| || |||||||||| || |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46240095 |
atcctggatctggcctatcaacattgatactcacactatttccaggacacactcttttaagttcagcagcatatctccttatcattgagtattgacaatc |
46239996 |
T |
|
| Q |
121 |
agcatcaccctcaacaattttctgagctatctgttttgctttccacgccctacctttggtgatacccactgcatgattcgtcctcatgtcatccatgatg |
220 |
Q |
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|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46239995 |
agcatcaccctcaacaattttctgagctatctgtttagctttccacgccctacctttggtgatacccactgcatgattcgtcctcatgtcatccatgatg |
46239896 |
T |
|
| Q |
221 |
tcc |
223 |
Q |
| |
|
||| |
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| T |
46239895 |
tcc |
46239893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 74 - 215
Target Start/End: Complemental strand, 23541436 - 23541295
Alignment:
| Q |
74 |
cttttaagttcagcagcatatctccttatcattgagtattgacaatcagcatcaccctcaacaattttctgagctatctgttttgctttccacgccctac |
173 |
Q |
| |
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||||||||||| |||||||| |||| ||||| | ||||| | |||||||||||| |||||||| ||||||| ||||||||||| ||||| ||||||| |
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| T |
23541436 |
cttttaagttctgcagcatacctccaaatcatggcatattgcctatcagcatcaccatcaacaatactctgagcaatctgttttgccttccaagccctac |
23541337 |
T |
|
| Q |
174 |
ctttggtgatacccactgcatgattcgtcctcatgtcatcca |
215 |
Q |
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| | || |||||||||||||| || |||||||||||||||| |
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| T |
23541336 |
ccattgtaatacccactgcatggtttgtcctcatgtcatcca |
23541295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 21 - 223
Target Start/End: Original strand, 3437384 - 3437574
Alignment:
| Q |
21 |
atcctggatctggcctatcagcagtgatactcaccctgtttccagggcacactcttttaagttcagcagcatatctccttatcattgagtattgacaatc |
120 |
Q |
| |
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|||||||||||||||||||| || |||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3437384 |
atcctggatctggcctatcaacattgatactcacactgtttccaggacacactcttttaagttcagcagcatatctccttatcattgagtattgacaatc |
3437483 |
T |
|
| Q |
121 |
agcatcaccctcaacaattttctgagctatctgttttgctttccacgccctacctttggtgatacccactgcatgattcgtcctcatgtcatccatgatg |
220 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |
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| T |
3437484 |
agcatcaccctcaacaattttctgagctatctgttttgctttccacgccc------------tacccactgcatgattcgtcctcatgtcatcgatgatg |
3437571 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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