View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0200_1D_low_23 (Length: 233)

Name: NF0200_1D_low_23
Description: NF0200_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0200_1D_low_23
NF0200_1D_low_23
[»] chr1 (14 HSPs)
chr1 (10-227)||(9299999-9300216)
chr1 (10-227)||(9257494-9257711)
chr1 (10-225)||(9364302-9364517)
chr1 (10-225)||(9242527-9242742)
chr1 (10-225)||(9337443-9337658)
chr1 (10-227)||(9466719-9466936)
chr1 (10-227)||(8926856-8927073)
chr1 (10-227)||(8939282-8939499)
chr1 (10-227)||(8962209-8962426)
chr1 (14-102)||(8979311-8979399)
chr1 (11-102)||(8861911-8862002)
chr1 (13-72)||(9070051-9070110)
chr1 (170-227)||(9420671-9420728)
chr1 (170-227)||(9437754-9437811)
[»] chr3 (1 HSPs)
chr3 (10-225)||(9171402-9171623)
[»] scaffold0690 (1 HSPs)
scaffold0690 (10-225)||(1511-1726)
[»] chr6 (1 HSPs)
chr6 (10-225)||(15910380-15910595)


Alignment Details
Target: chr1 (Bit Score: 210; Significance: 1e-115; HSPs: 14)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 10 - 227
Target Start/End: Original strand, 9299999 - 9300216
Alignment:
Q  10 aaatgaagtgggaacaatgggcaaaatccaccatctcaatgttgtccgtttgcttggcttttgtgccgatggatttcatcgtgctctagtctatgacttc 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9299999 aaatgaagtgggaacaatgggcaaaatccaccatctcaatgttgtccgtttgcttggcttttgtgccgatggatttcatcgtgctctagtctatgacttc 9300098  T
Q  110 ttcccaagtggtttgttgcagaaattcatttctcctcctagcaacaaagatagtttccttggatgggataagttgcaacaaattgctctaggcatagcca 209  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9300099 ttcccaagtggttcgttgcagaaattcatttctcctcctagcaacaaagatagtttccttggatgggataagttgcaacaaattgctctaggcatagcca 9300198  T
Q  210 atggaatcgagtatcttc 227  Q
    ||||||| ||||||||||    
T  9300199 atggaatagagtatcttc 9300216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 10 - 227
Target Start/End: Complemental strand, 9257711 - 9257494
Alignment:
Q  10 aaatgaagtgggaacaatgggcaaaatccaccatctcaatgttgtccgtttgcttggcttttgtgccgatggatttcatcgtgctctagtctatgacttc 109  Q
    ||||||||||||||| ||||| ||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9257711 aaatgaagtgggaactatgggtaaaatccaccatctcaatgctgtccgcttgcttggcttttgtgccgatggatttcatcgtgctctagtctatgacttc 9257612  T
Q  110 ttcccaagtggtttgttgcagaaattcatttctcctcctagcaacaaagatagtttccttggatgggataagttgcaacaaattgctctaggcatagcca 209  Q
    ||||||| ||||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  9257611 ttcccaaatggttcgttgcagaaattcatttctcctcctagcaacgaagatagtttccttggatgggacaagttgcaacaaattgctctaggcatagcca 9257512  T
Q  210 atggaatcgagtatcttc 227  Q
    ||||||||||||||||||    
T  9257511 atggaatcgagtatcttc 9257494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 10 - 225
Target Start/End: Original strand, 9364302 - 9364517
Alignment:
Q  10 aaatgaagtgggaacaatgggcaaaatccaccatctcaatgttgtccgtttgcttggcttttgtgccgatggatttcatcgtgctctagtctatgacttc 109  Q
    ||||||||||||||| ||||||||||| |||||||||||||| || |||||||||||||| || || ||||| |||| ||||||| |||||||||||||     
T  9364302 aaatgaagtgggaaccatgggcaaaattcaccatctcaatgtcgttcgtttgcttggcttctgcgcagatggttttcgtcgtgctttagtctatgacttt 9364401  T
Q  110 ttcccaagtggtttgttgcagaaattcatttctcctcctagcaacaaagatagtttccttggatgggataagttgcaacaaattgctctaggcatagcca 209  Q
    ||  ||| ||||| |||||||||||||||||||||  | | || |||||||  ||||||||||||||||||||||||| ||||||||||||||||||| |    
T  9364402 ttttcaaatggttcgttgcagaaattcatttctcccgcgaacagcaaagatgatttccttggatgggataagttgcaaaaaattgctctaggcatagcaa 9364501  T
Q  210 atggaatcgagtatct 225  Q
    |||| || ||||||||    
T  9364502 atggtattgagtatct 9364517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 10 - 225
Target Start/End: Complemental strand, 9242742 - 9242527
Alignment:
Q  10 aaatgaagtgggaacaatgggcaaaatccaccatctcaatgttgtccgtttgcttggcttttgtgccgatggatttcatcgtgctctagtctatgacttc 109  Q
    ||||||||||||||| |||||||| || || ||||| ||||| || |||||||||||||  || || ||||||||||  |||||| |||||||||||||     
T  9242742 aaatgaagtgggaaccatgggcaagattcatcatctaaatgtcgttcgtttgcttggctactgcgcggatggatttcgccgtgctttagtctatgacttt 9242643  T
Q  110 ttcccaagtggtttgttgcagaaattcatttctcctcctagcaacaaagatagtttccttggatgggataagttgcaacaaattgctctaggcatagcca 209  Q
    ||||||| ||||| ||||||||||||||||||| | || | ||||||||||  ||||||||||||||||||||||||| ||||||||||||| |||||||    
T  9242642 ttcccaaatggttcgttgcagaaattcatttcttccccaaacaacaaagatgatttccttggatgggataagttgcaaaaaattgctctaggtatagcca 9242543  T
Q  210 atggaatcgagtatct 225  Q
    |||| || ||||||||    
T  9242542 atggcattgagtatct 9242527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 10 - 225
Target Start/End: Original strand, 9337443 - 9337658
Alignment:
Q  10 aaatgaagtgggaacaatgggcaaaatccaccatctcaatgttgtccgtttgcttggcttttgtgccgatggatttcatcgtgctctagtctatgacttc 109  Q
    ||||||||||||||| ||||||||||| |||||||||||||| || |||||||| ||||| || || ||||| |||| ||||||| |||||||||||||     
T  9337443 aaatgaagtgggaaccatgggcaaaattcaccatctcaatgtcgttcgtttgctcggcttctgcgcagatggttttcgtcgtgctttagtctatgacttt 9337542  T
Q  110 ttcccaagtggtttgttgcagaaattcatttctcctcctagcaacaaagatagtttccttggatgggataagttgcaacaaattgctctaggcatagcca 209  Q
    ||  ||| ||||| |||||||||||||||||||||  | | || |||||||  ||||||||||||||||||||||||| ||||||||||||||||||| |    
T  9337543 ttttcaaatggttcgttgcagaaattcatttctcccgcgaacagcaaagatgatttccttggatgggataagttgcaaaaaattgctctaggcatagcaa 9337642  T
Q  210 atggaatcgagtatct 225  Q
    |||| || ||||||||    
T  9337643 atggtattgagtatct 9337658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 10 - 227
Target Start/End: Complemental strand, 9466936 - 9466719
Alignment:
Q  10 aaatgaagtgggaacaatgggcaaaatccaccatctcaatgttgtccgtttgcttggcttttgtgccgatggatttcatcgtgctctagtctatgacttc 109  Q
    ||||||||||||||| ||||| |||||||| ||||| ||||||||||||||||||||||| || || ||||||||| | || | | ||||||| ||  |     
T  9466936 aaatgaagtgggaactatgggaaaaatccatcatcttaatgttgtccgtttgcttggcttctgcgctgatggattttaccgcggtttagtctacgatctt 9466837  T
Q  110 ttcccaagtggtttgttgcagaaattcatttctcctcctagcaacaaagatagtttccttggatgggataagttgcaacaaattgctctaggcatagcca 209  Q
    || ||||||||||  |||||||||||  ||||||| || | ||||||||||  ||| ||||||||||| | | |||||||||||||||||||||||||||    
T  9466836 tttccaagtggttctttgcagaaatttctttctccaccaaacaacaaagatgcttttcttggatgggacacgctgcaacaaattgctctaggcatagcca 9466737  T
Q  210 atggaatcgagtatcttc 227  Q
    ||||||| ||||||||||    
T  9466736 atggaattgagtatcttc 9466719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 10 - 227
Target Start/End: Original strand, 8926856 - 8927073
Alignment:
Q  10 aaatgaagtgggaacaatgggcaaaatccaccatctcaatgttgtccgtttgcttggcttttgtgccgatggatttcatcgtgctctagtctatgacttc 109  Q
    |||||| |||||||| ||||| |||||||| ||| | |||||||| || ||||||||||||||||||||||||||| |||||||||| || ||||||||     
T  8926856 aaatgaggtgggaactatgggaaaaatccatcatgttaatgttgttcggttgcttggcttttgtgccgatggattttatcgtgctctggtttatgacttt 8926955  T
Q  110 ttcccaagtggtttgttgcagaaattcatttctcctcctagcaacaaagatagtttccttggatgggataagttgcaacaaattgctctaggcatagcca 209  Q
    ||||| | ||||| |||||| || ||||||||| | ||   |||||| |||  ||||||||| |||||    ||||||||||||||||||||||| ||||    
T  8926956 ttcccgaatggttcgttgcaaaacttcatttcttcacccgacaacaaggatgttttccttggttgggacttattgcaacaaattgctctaggcattgcca 8927055  T
Q  210 atggaatcgagtatcttc 227  Q
    |||| || ||||||||||    
T  8927056 atgggattgagtatcttc 8927073  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 10 - 227
Target Start/End: Original strand, 8939282 - 8939499
Alignment:
Q  10 aaatgaagtgggaacaatgggcaaaatccaccatctcaatgttgtccgtttgcttggcttttgtgccgatggatttcatcgtgctctagtctatgacttc 109  Q
    ||||||||||||||| ||||| ||||| || ||| | ||||||||||| ||||||||||||||||||||||||||| |||||||| | || ||||||||     
T  8939282 aaatgaagtgggaactatgggaaaaattcatcatgttaatgttgtccggttgcttggcttttgtgccgatggattttatcgtgctttggtttatgacttt 8939381  T
Q  110 ttcccaagtggtttgttgcagaaattcatttctcctcctagcaacaaagatagtttccttggatgggataagttgcaacaaattgctctaggcatagcca 209  Q
    ||||||| |||||  ||||| || ||||||||| | |||  |||||| |||  ||||||||| |||||    ||||||||||||||||| ||||| ||||    
T  8939382 ttcccaaatggttcattgcaaaatttcatttcttcacctgacaacaaggatgttttccttggttgggacttattgcaacaaattgctcttggcattgcca 8939481  T
Q  210 atggaatcgagtatcttc 227  Q
    |||| || ||||||||||    
T  8939482 atgggattgagtatcttc 8939499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 10 - 227
Target Start/End: Original strand, 8962209 - 8962426
Alignment:
Q  10 aaatgaagtgggaacaatgggcaaaatccaccatctcaatgttgtccgtttgcttggcttttgtgccgatggatttcatcgtgctctagtctatgacttc 109  Q
    ||||||||| ||||| ||||| |||||||| ||| | ||||||||||| || ||||||||||| || ||||||||| |||||||| | || ||||||||     
T  8962209 aaatgaagtaggaactatgggaaaaatccatcatgttaatgttgtccggttacttggcttttgcgctgatggattttatcgtgctttggtttatgacttt 8962308  T
Q  110 ttcccaagtggtttgttgcagaaattcatttctcctcctagcaacaaagatagtttccttggatgggataagttgcaacaaattgctctaggcatagcca 209  Q
    ||||| | ||||| |||||| || ||||||||| | |||  |||||| |||  ||||||||| |||||    |||||||| |||||||||||||| ||||    
T  8962309 ttccctaatggttcgttgcaaaatttcatttcttcacctgacaacaaggatgttttccttggttgggacttattgcaacagattgctctaggcattgcca 8962408  T
Q  210 atggaatcgagtatcttc 227  Q
    ||||||| ||||||||||    
T  8962409 atggaattgagtatcttc 8962426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 14 - 102
Target Start/End: Complemental strand, 8979399 - 8979311
Alignment:
Q  14 gaagtgggaacaatgggcaaaatccaccatctcaatgttgtccgtttgcttggcttttgtgccgatggatttcatcgtgctctagtcta 102  Q
    ||||||||||  ||||| |||||||||||  |||||||||| || ||||||||||| ||||| || ||| ||||||||| ||| |||||    
T  8979399 gaagtgggaattatgggaaaaatccaccacatcaatgttgttcgattgcttggcttctgtgcagagggaattcatcgtgttcttgtcta 8979311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 11 - 102
Target Start/End: Complemental strand, 8862002 - 8861911
Alignment:
Q  11 aatgaagtgggaacaatgggcaaaatccaccatctcaatgttgtccgtttgcttggcttttgtgccgatggatttcatcgtgctctagtcta 102  Q
    |||||||||||||  |||||||||||||||||  |||| || || |||||||||||||| || || |||||| |||| || ||||| |||||    
T  8862002 aatgaagtgggaattatgggcaaaatccaccacatcaacgtggttcgtttgcttggcttctgcgcagatggaattcaccgcgctcttgtcta 8861911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 13 - 72
Target Start/End: Complemental strand, 9070110 - 9070051
Alignment:
Q  13 tgaagtgggaacaatgggcaaaatccaccatctcaatgttgtccgtttgcttggcttttg 72  Q
    |||||||| ||  ||||||||||| |||||| ||||||| || |||||||||||||||||    
T  9070110 tgaagtggaaattatgggcaaaattcaccatatcaatgtggttcgtttgcttggcttttg 9070051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 9420728 - 9420671
Alignment:
Q  170 ggatgggataagttgcaacaaattgctctaggcatagccaatggaatcgagtatcttc 227  Q
    |||||||| ||| | |||||||||||||| ||||||||||| || || ||||||||||    
T  9420728 ggatgggagaagctacaacaaattgctcttggcatagccaaaggtattgagtatcttc 9420671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 170 - 227
Target Start/End: Complemental strand, 9437811 - 9437754
Alignment:
Q  170 ggatgggataagttgcaacaaattgctctaggcatagccaatggaatcgagtatcttc 227  Q
    |||||||| ||| | |||||||||||||| ||||||||||| || || ||||||||||    
T  9437811 ggatgggagaagctacaacaaattgctcttggcatagccaaaggtattgagtatcttc 9437754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 117; Significance: 9e-60; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 10 - 225
Target Start/End: Original strand, 9171402 - 9171623
Alignment:
Q  10 aaatgaagtgggaacaatgggcaaaatccaccatctcaatgttgtccgtttgcttggcttttgtgccgatggatttcatcgtgctctagtctatgacttc 109  Q
    ||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||     
T  9171402 aaatgaagtgggaactatgggcaaaatccaccatctaaatgttgtccgtttgcttggcttttgcgccgatggatttcatcgtgctctagtctatgatttt 9171501  T
Q  110 ttcccaagtggtttgttgcagaaattcatttctcctcctagca-------acaaagatagtttccttggatgggataagttgcaacaaattgctctaggc 202  Q
    ||||||| |||||  |||||||||||||||||   |   || |       ||||||||||||||||| ||||||| |||||||||||||||||||||||     
T  9171502 ttcccaaatggttctttgcagaaattcatttc-aatgacagaagagggagacaaagatagtttccttagatgggacaagttgcaacaaattgctctagga 9171600  T
Q  203 atagccaatggaatcgagtatct 225  Q
    |||||||||||||| ||||||||    
T  9171601 atagccaatggaattgagtatct 9171623  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0690 (Bit Score: 112; Significance: 9e-57; HSPs: 1)
Name: scaffold0690
Description:

Target: scaffold0690; HSP #1
Raw Score: 112; E-Value: 9e-57
Query Start/End: Original strand, 10 - 225
Target Start/End: Original strand, 1511 - 1726
Alignment:
Q  10 aaatgaagtgggaacaatgggcaaaatccaccatctcaatgttgtccgtttgcttggcttttgtgccgatggatttcatcgtgctctagtctatgacttc 109  Q
    ||||||||||||||| |||||||||||||||||||||||||| || ||||||||||||||||| || ||||| |||| ||||||| |||| ||||||||     
T  1511 aaatgaagtgggaaccatgggcaaaatccaccatctcaatgtcgttcgtttgcttggcttttgcgcagatggttttcgtcgtgctttagtttatgacttt 1610  T
Q  110 ttcccaagtggtttgttgcagaaattcatttctcctcctagcaacaaagatagtttccttggatgggataagttgcaacaaattgctctaggcatagcca 209  Q
    || |||| ||||| ||| ||||||||||| ||||  |  | ||||||||||  |||||||||||||||||| |||||||||||||||||||||||||| |    
T  1611 tttccaaatggttcgttacagaaattcatatctcacctgaacaacaaagatgatttccttggatgggataaattgcaacaaattgctctaggcatagcta 1710  T
Q  210 atggaatcgagtatct 225  Q
    |||| || ||||||||    
T  1711 atggcattgagtatct 1726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 108; Significance: 2e-54; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 10 - 225
Target Start/End: Complemental strand, 15910595 - 15910380
Alignment:
Q  10 aaatgaagtgggaacaatgggcaaaatccaccatctcaatgttgtccgtttgcttggcttttgtgccgatggatttcatcgtgctctagtctatgacttc 109  Q
    ||||||||||||||| |||||||||||||||||||||||||| || |||||||| ||||||||  | ||||| |||||||||||| |||| ||||||||     
T  15910595 aaatgaagtgggaaccatgggcaaaatccaccatctcaatgtcgttcgtttgctcggcttttgctcagatggttttcatcgtgctttagtttatgacttt 15910496  T
Q  110 ttcccaagtggtttgttgcagaaattcatttctcctcctagcaacaaagatagtttccttggatgggataagttgcaacaaattgctctaggcatagcca 209  Q
    || |||| ||||| ||| || |||||||| ||||  || | ||||||||||  |||||||||||||||||| |||||||||||||||||||||||||| |    
T  15910495 tttccaaatggttcgttacaaaaattcatatctcacccgaacaacaaagatgatttccttggatgggataaattgcaacaaattgctctaggcatagcta 15910396  T
Q  210 atggaatcgagtatct 225  Q
    |||| || ||||||||    
T  15910395 atggcattgagtatct 15910380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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