View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0200_1D_low_29 (Length: 216)

Name: NF0200_1D_low_29
Description: NF0200_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0200_1D_low_29
NF0200_1D_low_29
[»] chr8 (24 HSPs)
chr8 (77-184)||(35745182-35745289)
chr8 (77-184)||(10684452-10684559)
chr8 (15-73)||(21237888-21237946)
chr8 (77-158)||(39785011-39785091)
chr8 (21-76)||(42046325-42046380)
chr8 (77-158)||(25328465-25328545)
chr8 (15-76)||(39657552-39657613)
chr8 (15-76)||(14585775-14585836)
chr8 (15-76)||(15344406-15344467)
chr8 (15-76)||(15433471-15433532)
chr8 (15-76)||(15524775-15524836)
chr8 (19-76)||(41896619-41896676)
chr8 (21-76)||(471096-471151)
chr8 (15-74)||(1236629-1236688)
chr8 (15-74)||(1239329-1239388)
chr8 (21-76)||(43833926-43833981)
chr8 (75-153)||(6311121-6311197)
chr8 (21-76)||(5333533-5333588)
chr8 (21-76)||(7198125-7198180)
chr8 (21-76)||(18890629-18890684)
chr8 (41-76)||(26469076-26469111)
chr8 (22-64)||(3240485-3240527)
chr8 (15-76)||(8443441-8443502)
chr8 (15-76)||(29617204-29617265)
[»] chr3 (25 HSPs)
chr3 (77-184)||(10207724-10207831)
chr3 (77-187)||(2677275-2677386)
chr3 (77-187)||(2673119-2673230)
chr3 (77-184)||(8516886-8516993)
chr3 (77-183)||(8512007-8512113)
chr3 (79-183)||(32475276-32475380)
chr3 (79-184)||(32480132-32480238)
chr3 (77-125)||(24967957-24968005)
chr3 (15-76)||(51923822-51923883)
chr3 (21-76)||(8914813-8914868)
chr3 (21-76)||(51303575-51303630)
chr3 (15-76)||(628855-628916)
chr3 (21-86)||(16235527-16235592)
chr3 (77-187)||(18656224-18656329)
chr3 (75-155)||(22173380-22173458)
chr3 (15-86)||(29922152-29922223)
chr3 (15-86)||(29971305-29971376)
chr3 (15-76)||(14859585-14859646)
chr3 (15-76)||(53807790-53807851)
chr3 (21-76)||(7546716-7546771)
chr3 (21-76)||(19339277-19339331)
chr3 (21-76)||(42460850-42460905)
chr3 (26-76)||(50194267-50194317)
chr3 (34-76)||(51487209-51487251)
chr3 (31-76)||(12946899-12946944)
[»] chr5 (22 HSPs)
chr5 (77-183)||(2785167-2785273)
chr5 (77-184)||(33791107-33791214)
chr5 (77-186)||(31402037-31402146)
chr5 (77-184)||(31397180-31397287)
chr5 (77-184)||(33767970-33768077)
chr5 (77-183)||(37561633-37561740)
chr5 (77-184)||(37556811-37556919)
chr5 (75-183)||(28807760-28807868)
chr5 (15-76)||(14211322-14211383)
chr5 (75-153)||(27444793-27444869)
chr5 (21-76)||(2979238-2979293)
chr5 (21-76)||(19103399-19103454)
chr5 (21-76)||(28540838-28540893)
chr5 (75-153)||(1457347-1457423)
chr5 (75-153)||(27449637-27449713)
chr5 (27-76)||(26878040-26878089)
chr5 (27-76)||(39567377-39567426)
chr5 (75-133)||(43592120-43592178)
chr5 (75-153)||(43598547-43598623)
chr5 (75-153)||(43604039-43604115)
chr5 (75-153)||(43609531-43609607)
chr5 (15-76)||(8088144-8088205)
[»] chr6 (25 HSPs)
chr6 (79-183)||(33336133-33336237)
chr6 (77-184)||(33330634-33330741)
chr6 (77-183)||(6005209-6005315)
chr6 (77-184)||(5343271-5343378)
chr6 (77-183)||(16838536-16838642)
chr6 (75-158)||(14737762-14737843)
chr6 (95-158)||(28184320-28184382)
chr6 (75-185)||(6438292-6438400)
chr6 (76-158)||(14742622-14742702)
chr6 (75-184)||(11856764-11856871)
chr6 (21-76)||(1523511-1523566)
chr6 (77-158)||(28155758-28155837)
chr6 (75-155)||(22010882-22010960)
chr6 (21-86)||(31296923-31296988)
chr6 (21-76)||(546134-546189)
chr6 (21-76)||(9380126-9380181)
chr6 (21-76)||(14801930-14801985)
chr6 (21-76)||(31852125-31852180)
chr6 (26-76)||(30776771-30776821)
chr6 (21-76)||(3913506-3913561)
chr6 (15-74)||(7976121-7976180)
chr6 (21-76)||(8102829-8102884)
chr6 (29-76)||(34222906-34222953)
chr6 (26-76)||(32327149-32327199)
chr6 (15-76)||(1933624-1933685)
[»] scaffold0197 (2 HSPs)
scaffold0197 (77-184)||(19352-19459)
scaffold0197 (77-184)||(14497-14604)
[»] scaffold0028 (1 HSPs)
scaffold0028 (77-184)||(149143-149250)
[»] scaffold0259 (1 HSPs)
scaffold0259 (77-183)||(2438-2544)
[»] scaffold0009 (2 HSPs)
scaffold0009 (77-186)||(182152-182261)
scaffold0009 (27-76)||(58020-58069)
[»] chr1 (18 HSPs)
chr1 (77-186)||(43988653-43988762)
chr1 (75-187)||(39445288-39445399)
chr1 (75-183)||(25445275-25445382)
chr1 (75-158)||(41386566-41386648)
chr1 (75-158)||(44024058-44024140)
chr1 (101-183)||(1055223-1055304)
chr1 (75-158)||(41398055-41398137)
chr1 (14-76)||(34413024-34413086)
chr1 (15-76)||(19061008-19061069)
chr1 (21-76)||(37720081-37720136)
chr1 (21-76)||(43412479-43412534)
chr1 (21-76)||(48750290-48750345)
chr1 (19-73)||(16262964-16263018)
chr1 (15-76)||(24583049-24583110)
chr1 (15-76)||(44543371-44543432)
chr1 (27-76)||(47133014-47133063)
chr1 (19-75)||(41081618-41081674)
chr1 (15-76)||(9341825-9341886)
[»] chr7 (21 HSPs)
chr7 (77-184)||(16879863-16879970)
chr7 (77-184)||(16884719-16884826)
chr7 (77-183)||(24266390-24266496)
chr7 (77-184)||(24261511-24261618)
chr7 (77-183)||(19992104-19992210)
chr7 (77-183)||(21812426-21812532)
chr7 (75-158)||(24024513-24024594)
chr7 (77-158)||(31109770-31109849)
chr7 (75-158)||(4866548-4866629)
chr7 (75-158)||(12396730-12396811)
chr7 (75-158)||(12406150-12406231)
chr7 (21-76)||(22743048-22743103)
chr7 (21-76)||(24350771-24350826)
chr7 (21-76)||(35665067-35665122)
chr7 (15-76)||(969391-969452)
chr7 (5-76)||(9450069-9450140)
chr7 (21-76)||(24069326-24069381)
chr7 (21-76)||(28476331-28476385)
chr7 (21-76)||(35133051-35133106)
chr7 (21-76)||(48930811-48930866)
chr7 (15-76)||(12141240-12141301)
[»] chr2 (13 HSPs)
chr2 (77-184)||(19349069-19349176)
chr2 (77-183)||(19344212-19344318)
chr2 (77-183)||(32246577-32246682)
chr2 (77-158)||(39812175-39812255)
chr2 (15-76)||(10929771-10929832)
chr2 (75-155)||(44312809-44312887)
chr2 (21-76)||(14955641-14955696)
chr2 (15-76)||(10237149-10237210)
chr2 (26-76)||(3309062-3309112)
chr2 (15-76)||(17249080-17249141)
chr2 (19-76)||(41694731-41694788)
chr2 (5-76)||(1421772-1421843)
chr2 (15-66)||(32448562-32448613)
[»] chr4 (21 HSPs)
chr4 (75-183)||(3813816-3813923)
chr4 (75-183)||(18855519-18855626)
chr4 (77-183)||(45348005-45348109)
chr4 (77-183)||(45357484-45357588)
chr4 (75-184)||(9224592-9224699)
chr4 (17-74)||(22038736-22038793)
chr4 (75-158)||(9229379-9229460)
chr4 (17-76)||(36194826-36194885)
chr4 (77-187)||(5732454-5732559)
chr4 (15-76)||(47320344-47320405)
chr4 (15-76)||(52944427-52944488)
chr4 (5-76)||(21686174-21686245)
chr4 (21-76)||(31359678-31359733)
chr4 (75-153)||(51520280-51520356)
chr4 (19-76)||(18935902-18935959)
chr4 (5-76)||(2520885-2520956)
chr4 (21-76)||(31891219-31891274)
chr4 (75-154)||(56146897-56146974)
chr4 (39-76)||(51888143-51888180)
chr4 (33-77)||(9145822-9145866)
chr4 (20-76)||(27652065-27652120)
[»] scaffold0464 (1 HSPs)
scaffold0464 (75-184)||(154-262)
[»] scaffold0355 (2 HSPs)
scaffold0355 (79-158)||(9829-9907)
scaffold0355 (110-158)||(101-148)
[»] scaffold0127 (1 HSPs)
scaffold0127 (75-158)||(34134-34216)
[»] scaffold0777 (1 HSPs)
scaffold0777 (135-184)||(6292-6341)
[»] scaffold0479 (1 HSPs)
scaffold0479 (95-184)||(13140-13228)
[»] scaffold0347 (1 HSPs)
scaffold0347 (21-76)||(6132-6187)
[»] scaffold0135 (1 HSPs)
scaffold0135 (75-158)||(35247-35328)
[»] scaffold0039 (1 HSPs)
scaffold0039 (16-86)||(93204-93274)
[»] scaffold0888 (1 HSPs)
scaffold0888 (31-76)||(1610-1655)
[»] scaffold0121 (1 HSPs)
scaffold0121 (19-76)||(31206-31263)
[»] scaffold0042 (1 HSPs)
scaffold0042 (15-86)||(92418-92489)


Alignment Details
Target: chr8 (Bit Score: 108; Significance: 2e-54; HSPs: 24)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 35745289 - 35745182
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggatt 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35745289 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggatt 35745190  T
Q  177 cacaacaa 184  Q
    ||||||||    
T  35745189 cacaacaa 35745182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 77 - 184
Target Start/End: Original strand, 10684452 - 10684559
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggatt 176  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  10684452 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggatt 10684551  T
Q  177 cacaacaa 184  Q
    ||||||||    
T  10684552 cacaacaa 10684559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 15 - 73
Target Start/End: Original strand, 21237888 - 21237946
Alignment:
Q  15 tggacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcat 73  Q
    ||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  21237888 tggacgtcaatgttgcagatccagaagcatgtgtactctgttgatttagattttatcat 21237946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 39785011 - 39785091
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt 158  Q
    |||||||| |||||||  ||||| ||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  39785011 gcttggagaccatttgttctcattgattatcactatcacttgctccacacatctttggtttatt-tcattggtgtgaaggtt 39785091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 42046325 - 42046380
Alignment:
Q  21 tcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    ||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  42046325 tcaatgttgcagatccagaagcatgggtattctggtgatttagatttcatcatatt 42046380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 25328465 - 25328545
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt 158  Q
    |||||||| |||||||  ||||| ||||||| |||||||||||||| |||||||||| |||||| |||||| ||||||||||    
T  25328465 gcttggagaccatttgttctcattgattatcactatcacttgctccgcacatcattgatttatt-tcattgttgtgaaggtt 25328545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 39657552 - 39657613
Alignment:
Q  15 tggacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    ||||| |||| |||||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  39657552 tggacgtcaacgttgcagatccagaagcatgggtattctggtgatttagatttcatcatatt 39657613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 14585775 - 14585836
Alignment:
Q  15 tggacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    ||||| |||| |||||||||||||||||||| |||  |||||||||||||||| ||||||||    
T  14585775 tggacgtcaacgttgcagatccagaagcatgggtatcctggtgatttagatttcatcatatt 14585836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 15344406 - 15344467
Alignment:
Q  15 tggacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    ||||| |||| |||||||||||||||||| | ||| |||||||||||||||| |||||||||    
T  15344406 tggacgtcaacgttgcagatccagaagcaagagtattctggtgatttagattatatcatatt 15344467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 15433471 - 15433532
Alignment:
Q  15 tggacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    ||||| |||| |||||||||||||||||| | ||| |||||||||||||||| |||||||||    
T  15433471 tggacgtcaacgttgcagatccagaagcaagagtattctggtgatttagattatatcatatt 15433532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 15524775 - 15524836
Alignment:
Q  15 tggacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    ||||| |||| |||||||||||||||||| | ||| |||||||||||||||| |||||||||    
T  15524775 tggacgtcaacgttgcagatccagaagcaagagtattctggtgatttagattatatcatatt 15524836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 41896619 - 41896676
Alignment:
Q  19 catcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||||| |||||||||| ||||||||| ||| ||||||||||||||||| ||||||||    
T  41896619 catcaacgttgcagatctagaagcatgagtattctggtgatttagatttcatcatatt 41896676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 471151 - 471096
Alignment:
Q  21 tcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||| ||||||||||| |||||||| ||| |||| |||||||||||||||||||||    
T  471151 tcaacgttgcagatccggaagcatgggtattctgatgatttagattttatcatatt 471096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 1236688 - 1236629
Alignment:
Q  15 tggacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcata 74  Q
    ||||| |||| |||||||||||||||||| | ||| |||||||||||||||| |||||||    
T  1236688 tggacgtcaacgttgcagatccagaagcaagagtattctggtgatttagattatatcata 1236629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 1239388 - 1239329
Alignment:
Q  15 tggacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcata 74  Q
    ||||| |||| |||||||||||||||||| | ||| |||||||||||||||| |||||||    
T  1239388 tggacgtcaacgttgcagatccagaagcaagagtattctggtgatttagattatatcata 1239329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 43833981 - 43833926
Alignment:
Q  21 tcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||| |||||||||| ||||||||| ||| ||||||||||||| ||||||||||||    
T  43833981 tcaacgttgcagatctagaagcatgagtattctggtgatttagtttttatcatatt 43833926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 153
Target Start/End: Complemental strand, 6311197 - 6311121
Alignment:
Q  75 ttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 153  Q
    |||||||||  |||||||  ||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||    
T  6311197 ttgcttggaaaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtga 6311121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 5333533 - 5333588
Alignment:
Q  21 tcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||| |||| ||||||||||||||| ||| ||| |||||||||||||| |||||||    
T  5333533 tcaacgttgtagatccagaagcatgagtattctagtgatttagattttgtcatatt 5333588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 7198180 - 7198125
Alignment:
Q  21 tcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||| ||||||||||| ||||||||  || | ||||||||||||||||||||||||    
T  7198180 tcaacgttgcagatccggaagcatgaatattttggtgatttagattttatcatatt 7198125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 18890684 - 18890629
Alignment:
Q  21 tcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||| ||||||||||||||| |||  ||| | ||||||||||||||||||||||||    
T  18890684 tcaacgttgcagatccagaaacataggtattatggtgatttagattttatcatatt 18890629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 76
Target Start/End: Complemental strand, 26469111 - 26469076
Alignment:
Q  41 gcatgtgtactctggtgatttagattttatcatatt 76  Q
    ||||||||| ||||||||||||||||||||||||||    
T  26469111 gcatgtgtattctggtgatttagattttatcatatt 26469076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 3240485 - 3240527
Alignment:
Q  22 caatgttgcagatccagaagcatgtgtactctggtgatttaga 64  Q
    |||||||||||||||||||| ||| ||| ||||||||||||||    
T  3240485 caatgttgcagatccagaagtatgggtattctggtgatttaga 3240527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 8443502 - 8443441
Alignment:
Q  15 tggacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||||||||| ||||||||||| ||||||   ||| | ||||||||||||||| ||||||||    
T  8443502 tggacatcaacgttgcagatccggaagcactggtattatggtgatttagatttgatcatatt 8443441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 29617265 - 29617204
Alignment:
Q  15 tggacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    ||||| |||| |||||||||||| || |||   || ||||||||||||||||||||||||||    
T  29617265 tggacgtcaacgttgcagatccataaacattgttattctggtgatttagattttatcatatt 29617204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 108; Significance: 2e-54; HSPs: 25)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 108; E-Value: 2e-54
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 10207831 - 10207724
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggatt 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  10207831 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggatt 10207732  T
Q  177 cacaacaa 184  Q
    ||||||||    
T  10207731 cacaacaa 10207724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 77 - 187
Target Start/End: Original strand, 2677275 - 2677386
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaagg-ttcattagttgagccggat 175  Q
    ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2677275 gcttggaggccatttgctctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtttcattagttgagccggat 2677374  T
Q  176 tcacaacaaaaa 187  Q
    ||||||||||||    
T  2677375 tcacaacaaaaa 2677386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 77 - 187
Target Start/End: Original strand, 2673119 - 2673230
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaagg-ttcattagttgagccggat 175  Q
    ||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  2673119 gcttggaggccatttactctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtttcattagttgagccggat 2673218  T
Q  176 tcacaacaaaaa 187  Q
    ||||||||||||    
T  2673219 tcacaacaaaaa 2673230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 8516993 - 8516886
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggatt 176  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8516993 gcttggaagccatttgctctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccggatt 8516894  T
Q  177 cacaacaa 184  Q
    ||||||||    
T  8516893 cacaacaa 8516886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 77 - 183
Target Start/End: Complemental strand, 8512113 - 8512007
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggatt 176  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  8512113 gcttggaagccatttgctctcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccggatt 8512014  T
Q  177 cacaaca 183  Q
    |||||||    
T  8512013 cacaaca 8512007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 79 - 183
Target Start/End: Complemental strand, 32475380 - 32475276
Alignment:
Q  79 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 178  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||    
T  32475380 ttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggattca 32475281  T
Q  179 caaca 183  Q
    |||||    
T  32475280 caaca 32475276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 79 - 184
Target Start/End: Complemental strand, 32480238 - 32480132
Alignment:
Q  79 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgg-tttattctcattggtgtgaaggttcattagttgagccggattc 177  Q
    ||||||||||||||||||||||||||| ||||||| ||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||||    
T  32480238 ttggaggccatttgcactcatagattacctctatctcttgctccacacatctttggatttattctcattggtgtgaaggttcattagttgagccggattc 32480139  T
Q  178 acaacaa 184  Q
    |||||||    
T  32480138 acaacaa 32480132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 3e-19
Query Start/End: Original strand, 77 - 125
Target Start/End: Complemental strand, 24968005 - 24967957
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccaca 125  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24968005 gcttggaggccatttgcactcatagattatctctatcacttgctccaca 24967957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 51923822 - 51923883
Alignment:
Q  15 tggacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    ||||| |||| |||||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  51923822 tggacgtcaacgttgcagatccagaagcatgggtattctggtgatttagatttcatcatatt 51923883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 8914813 - 8914868
Alignment:
Q  21 tcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||| |||||||||||||||| ||||||| ||||||||||||||||| ||||||||    
T  8914813 tcaacgttgcagatccagaagaatgtgtattctggtgatttagatttcatcatatt 8914868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 51303630 - 51303575
Alignment:
Q  21 tcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||| |||||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  51303630 tcaacgttgcagatccagaagcatgggtattctggtgatttagatttcatcatatt 51303575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 628916 - 628855
Alignment:
Q  15 tggacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||||||||| |||| ||||||||||||| | ||| |||||||||||||||| |||||||||    
T  628916 tggacatcaacgttgtagatccagaagcaagagtattctggtgatttagattatatcatatt 628855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 16235527 - 16235592
Alignment:
Q  21 tcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatattgcttggaggc 86  Q
    |||| |||||||||| ||||||||| ||| ||||||||||||||||| |||||||| |||| ||||    
T  16235527 tcaacgttgcagatcaagaagcatgggtattctggtgatttagatttcatcatattacttgtaggc 16235592  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 187
Target Start/End: Complemental strand, 18656329 - 18656224
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggatt 176  Q
    |||||||| |||||||  ||||| ||||| | | |||||||||||||||||||||||   |||| |||||||||||||||||  ||  | || |||||||    
T  18656329 gcttggagaccatttgttctcattgattaccaccatcacttgctccacacatcattg---tattttcattggtgtgaaggtttctt--tggaaccggatt 18656235  T
Q  177 cacaacaaaaa 187  Q
    |||||||||||    
T  18656234 cacaacaaaaa 18656224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 75 - 155
Target Start/End: Original strand, 22173380 - 22173458
Alignment:
Q  75 ttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaag 155  Q
    |||||||||| |||||||  ||||| ||||| | ||||| |||||||||||||||||| ||||||| ||||||||||||||    
T  22173380 ttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtgaag 22173458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 29922152 - 29922223
Alignment:
Q  15 tggacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatattgcttggaggc 86  Q
    ||||| |||| ||||||||||||||| ||||  |  ||||||||||||||||||||||||||| ||| ||||    
T  29922152 tggacgtcaacgttgcagatccagaaacatgattgttctggtgatttagattttatcatattgtttgtaggc 29922223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 86
Target Start/End: Original strand, 29971305 - 29971376
Alignment:
Q  15 tggacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatattgcttggaggc 86  Q
    ||||| |||| ||||||||||||||| ||||  |  ||||||||||||||||||||||||||| ||| ||||    
T  29971305 tggacgtcaacgttgcagatccagaaacatgattgttctggtgatttagattttatcatattgtttgtaggc 29971376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 14859585 - 14859646
Alignment:
Q  15 tggacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    ||||| |||| |||||||||||||||||||| ||| | |||| |||||||||||||| ||||    
T  14859585 tggacgtcaacgttgcagatccagaagcatgggtattttggtaatttagattttatcgtatt 14859646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 53807851 - 53807790
Alignment:
Q  15 tggacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    ||||| |||| |||||| ||||||||||| | ||| |||||||||||||||| |||||||||    
T  53807851 tggacgtcaacgttgcatatccagaagcaagagtattctggtgatttagattatatcatatt 53807790  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 7546716 - 7546771
Alignment:
Q  21 tcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||| ||||| |||||| ||||||| ||| ||||||||||||||||| ||||||||    
T  7546716 tcaacgttgccgatccaaaagcatgggtattctggtgatttagatttcatcatatt 7546771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 19339277 - 19339331
Alignment:
Q  21 tcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    ||||||||||||||||||||||||| ||| | | |||| |||||||||||||||||    
T  19339277 tcaatgttgcagatccagaagcatgggta-tttcgtgacttagattttatcatatt 19339331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 42460850 - 42460905
Alignment:
Q  21 tcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||| ||||||||| ||||||||||   | ||||||||||||||||||||||||||    
T  42460850 tcaacgttgcagatacagaagcatgaacattctggtgatttagattttatcatatt 42460905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 50194317 - 50194267
Alignment:
Q  26 gttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    ||||||||||| |||||||| ||| ||||||||||||||| | ||||||||    
T  50194317 gttgcagatccggaagcatgagtattctggtgatttagatatcatcatatt 50194267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 34 - 76
Target Start/End: Original strand, 51487209 - 51487251
Alignment:
Q  34 tccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    ||||||| |||| ||| ||||||||||||||||||||||||||    
T  51487209 tccagaaacatgagtattctggtgatttagattttatcatatt 51487251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 12946944 - 12946899
Alignment:
Q  31 agatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    ||||||||||| ||| ||| ||||||||||||||||| ||||||||    
T  12946944 agatccagaagtatgagtattctggtgatttagatttcatcatatt 12946899  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 107; Significance: 8e-54; HSPs: 22)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 107; E-Value: 8e-54
Query Start/End: Original strand, 77 - 183
Target Start/End: Complemental strand, 2785273 - 2785167
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggatt 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2785273 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggatt 2785174  T
Q  177 cacaaca 183  Q
    |||||||    
T  2785173 cacaaca 2785167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 33791214 - 33791107
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggatt 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33791214 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattgatgtgaaggttcattagttgagccggatt 33791115  T
Q  177 cacaacaa 184  Q
    ||||||||    
T  33791114 cacaacaa 33791107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 102; E-Value: 8e-51
Query Start/End: Original strand, 77 - 186
Target Start/End: Original strand, 31402037 - 31402146
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggatt 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  31402037 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccgaatt 31402136  T
Q  177 cacaacaaaa 186  Q
    ||||||||||    
T  31402137 cacaacaaaa 31402146  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 77 - 184
Target Start/End: Original strand, 31397180 - 31397287
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggatt 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||    
T  31397180 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccgaatt 31397279  T
Q  177 cacaacaa 184  Q
    ||||||||    
T  31397280 cacaacaa 31397287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 33768077 - 33767970
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggatt 176  Q
    ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33768077 gcttggaggtcatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattgatgtgaaggttcattagttgagccggatt 33767978  T
Q  177 cacaacaa 184  Q
    ||||||||    
T  33767977 cacaacaa 33767970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 77 - 183
Target Start/End: Original strand, 37561633 - 37561740
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaagg-ttcattagttgagccggat 175  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||| || ||||||||| ||||||    
T  37561633 gcttggaggccatttgctctcatagattatcactatcacttgctccacacatctttggtttattatcattggtgtgaaggtttgattagttgaaccggat 37561732  T
Q  176 tcacaaca 183  Q
    ||||||||    
T  37561733 tcacaaca 37561740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 77 - 184
Target Start/End: Original strand, 37556811 - 37556919
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaag-gttcattagttgagccggat 175  Q
    ||||||||||||||||| ||||||||||||| ||||||||||||||||||||| |||||||||| ||||||||||||||  || ||||||||| ||||||    
T  37556811 gcttggaggccatttgctctcatagattatcactatcacttgctccacacatctttggtttattatcattggtgtgaagatttgattagttgaaccggat 37556910  T
Q  176 tcacaacaa 184  Q
    |||||||||    
T  37556911 tcacaacaa 37556919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 75 - 183
Target Start/End: Original strand, 28807760 - 28807868
Alignment:
Q  75 ttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaagg-ttcattagttgagccgg 173  Q
    ||||||||| ||||||||  ||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| ||||    
T  28807760 ttgcttggaagccatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggtttcattagttgaaccgg 28807858  T
Q  174 attcacaaca 183  Q
    ||||||||||    
T  28807859 attcacaaca 28807868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 14211322 - 14211383
Alignment:
Q  15 tggacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    ||||| |||| |||||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  14211322 tggacgtcaacgttgcagatccagaagcatgggtattctggtgatttagatttcatcatatt 14211383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 75 - 153
Target Start/End: Complemental strand, 27444869 - 27444793
Alignment:
Q  75 ttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 153  Q
    |||||||||| ||||||| |||||| ||||| | ||||| |||||||||||||||||| ||||||| ||||||||||||    
T  27444869 ttgcttggagaccatttgtactcattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtga 27444793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 2979293 - 2979238
Alignment:
Q  21 tcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||| |||||||||||||||||| | ||| ||||||||||||||||| ||||||||    
T  2979293 tcaacgttgcagatccagaagcacgggtattctggtgatttagatttcatcatatt 2979238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 19103454 - 19103399
Alignment:
Q  21 tcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    ||||| ||||||||||||||||||| ||| || |||||||||||||| ||||||||    
T  19103454 tcaatattgcagatccagaagcatgagtattccggtgatttagatttcatcatatt 19103399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 28540893 - 28540838
Alignment:
Q  21 tcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||| |||||||||||||||||||| ||| | ||||||||||||||| ||||||||    
T  28540893 tcaacgttgcagatccagaagcatgggtattttggtgatttagatttcatcatatt 28540838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 153
Target Start/End: Original strand, 1457347 - 1457423
Alignment:
Q  75 ttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 153  Q
    |||||||||| |||||||  ||||| ||||| | ||||| |||||||||||||||||| ||||||| ||||||||||||    
T  1457347 ttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtga 1457423  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 153
Target Start/End: Complemental strand, 27449713 - 27449637
Alignment:
Q  75 ttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 153  Q
    |||||||||| ||||||| |||||| ||||| | ||||| ||||||||||| |||||| ||||||| ||||||||||||    
T  27449713 ttgcttggagaccatttgtactcattgattaccactatctcttgctccacatatcatt-gtttatt-tcattggtgtga 27449637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 26878089 - 26878040
Alignment:
Q  27 ttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    ||||||||||||||||||| ||| | |||||| |||||||||||||||||    
T  26878089 ttgcagatccagaagcatgggtattttggtgacttagattttatcatatt 26878040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 39567377 - 39567426
Alignment:
Q  27 ttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||||||||||||| |||| ||| ||||||||||||||||| ||||||||    
T  39567377 ttgcagatccagaaacatgggtattctggtgatttagatttcatcatatt 39567426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 133
Target Start/End: Complemental strand, 43592178 - 43592120
Alignment:
Q  75 ttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattg 133  Q
    |||||||||| |||||||  ||||| ||||| | ||||| |||||||||||||||||||    
T  43592178 ttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcattg 43592120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 153
Target Start/End: Complemental strand, 43598623 - 43598547
Alignment:
Q  75 ttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 153  Q
    |||||||||| ||| |||  ||||| ||||| | ||||| |||||||||||||||||| ||||||| ||||||||||||    
T  43598623 ttgcttggagaccaattgttctcattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtga 43598547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 153
Target Start/End: Complemental strand, 43604115 - 43604039
Alignment:
Q  75 ttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 153  Q
    |||||||||| ||| |||  ||||| ||||| | ||||| |||||||||||||||||| ||||||| ||||||||||||    
T  43604115 ttgcttggagaccaattgttctcattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtga 43604039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 75 - 153
Target Start/End: Complemental strand, 43609607 - 43609531
Alignment:
Q  75 ttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 153  Q
    |||||||||| ||| |||  ||||| ||||| | ||||| |||||||||||||||||| ||||||| ||||||||||||    
T  43609607 ttgcttggagaccaattgttctcattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtga 43609531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 8088205 - 8088144
Alignment:
Q  15 tggacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    ||||| |||| |||||||||||| || || | ||| |||||||||||||||| |||||||||    
T  8088205 tggacgtcaacgttgcagatccaaaaacaagagtattctggtgatttagattatatcatatt 8088144  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 105; Significance: 1e-52; HSPs: 25)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 105; E-Value: 1e-52
Query Start/End: Original strand, 79 - 183
Target Start/End: Original strand, 33336133 - 33336237
Alignment:
Q  79 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 178  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33336133 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattca 33336232  T
Q  179 caaca 183  Q
    |||||    
T  33336233 caaca 33336237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 77 - 184
Target Start/End: Original strand, 33330634 - 33330741
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggatt 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  33330634 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctaattggtgtgaaggttcattagttgagccggatt 33330733  T
Q  177 cacaacaa 184  Q
    ||||||||    
T  33330734 cacaacaa 33330741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 77 - 183
Target Start/End: Complemental strand, 6005315 - 6005209
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggatt 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6005315 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggatt 6005216  T
Q  177 cacaaca 183  Q
     ||||||    
T  6005215 tacaaca 6005209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 5343378 - 5343271
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggatt 176  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||||||||    
T  5343378 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgacttattctcattggtgtgaaggttcattagttgagccggatt 5343279  T
Q  177 cacaacaa 184  Q
    ||||||||    
T  5343278 cacaacaa 5343271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 77 - 183
Target Start/End: Complemental strand, 16838642 - 16838536
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggatt 176  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  16838642 gcttgaaggccatttgcactcatagattatctctatcacttgctccacatatcattggtttattctcattggtgtgaaggttcattagttgagccggatt 16838543  T
Q  177 cacaaca 183  Q
    |||||||    
T  16838542 cacaaca 16838536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 75 - 158
Target Start/End: Original strand, 14737762 - 14737843
Alignment:
Q  75 ttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt 158  Q
    |||||||||| |||||||  ||||| ||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  14737762 ttgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcatt-gtttatt-tcattggtgtgaaggtt 14737843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 95 - 158
Target Start/End: Complemental strand, 28184382 - 28184320
Alignment:
Q  95 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt 158  Q
    ||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  28184382 ctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggtt 28184320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 75 - 185
Target Start/End: Complemental strand, 6438400 - 6438292
Alignment:
Q  75 ttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccgga 174  Q
    ||||||||| |||||| |  ||||| ||||| | |||||||||||||||||||||||| ||||||| |||||||||||||||||| || || || |||||    
T  6438400 ttgcttggaagccattggttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtgaaggttcgtttgtagaaccgga 6438303  T
Q  175 ttcacaacaaa 185  Q
     ||||||||||    
T  6438302 atcacaacaaa 6438292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 76 - 158
Target Start/End: Original strand, 14742622 - 14742702
Alignment:
Q  76 tgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt 158  Q
    ||||||||| |||||||  ||||| ||||||| |||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  14742622 tgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcatt-gtttatt-tcattggtgtgaaggtt 14742702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 184
Target Start/End: Complemental strand, 11856871 - 11856764
Alignment:
Q  75 ttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccgga 174  Q
    |||||||||| |||||||  ||||| ||||| | ||||| |||||||||||||||||| ||||||| |||||||||||||||||  ||  |||| |||||    
T  11856871 ttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtgaaggttttttttttgaaccgga 11856774  T
Q  175 ttcacaacaa 184  Q
    ||||||||||    
T  11856773 ttcacaacaa 11856764  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 1523511 - 1523566
Alignment:
Q  21 tcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||| |||||||||||||||||||| ||| ||||||||||||||||||||||||||    
T  1523511 tcaacgttgcagatccagaagcatgggtattctggtgatttagattttatcatatt 1523566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 28155758 - 28155837
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt 158  Q
    ||||| || |||||||| ||||| ||||||| |||||||||||||||||||||||| |||||||  ||||||||||||||||    
T  28155758 gcttgaagaccatttgctctcattgattatcactatcacttgctccacacatcatt-gtttatt-gcattggtgtgaaggtt 28155837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 155
Target Start/End: Original strand, 22010882 - 22010960
Alignment:
Q  75 ttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaag 155  Q
    |||||||||| |||||||  ||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||||    
T  22010882 ttgcttggagaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtgaag 22010960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 21 - 86
Target Start/End: Original strand, 31296923 - 31296988
Alignment:
Q  21 tcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatattgcttggaggc 86  Q
    |||| ||||||||||| |||||||| ||| |||||||||||| |||||||||||||| ||| ||||    
T  31296923 tcaacgttgcagatccggaagcatgagtattctggtgatttatattttatcatattgtttgtaggc 31296988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 546134 - 546189
Alignment:
Q  21 tcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||| |||||||||||||||||||| ||| ||||||| ||||||||| ||||||||    
T  546134 tcaacgttgcagatccagaagcatgggtattctggtggtttagatttcatcatatt 546189  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 9380126 - 9380181
Alignment:
Q  21 tcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    ||||||||| |||| |||||||||| ||| | ||||||||||||||||||||||||    
T  9380126 tcaatgttgtagattcagaagcatgggtattttggtgatttagattttatcatatt 9380181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 14801930 - 14801985
Alignment:
Q  21 tcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||| |||||||||||||||| ||||||| | ||||||||||||||| ||||||||    
T  14801930 tcaacgttgcagatccagaagaatgtgtattttggtgatttagatttcatcatatt 14801985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 31852180 - 31852125
Alignment:
Q  21 tcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||| ||||||||||| |||||||| ||| |||||||||||| |||||||||||||    
T  31852180 tcaaagttgcagatccggaagcatgagtattctggtgatttaaattttatcatatt 31852125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 30776771 - 30776821
Alignment:
Q  26 gttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||||| ||| ||||||||| ||| ||||||||||||||||||||||||||    
T  30776771 gttgcaaatctagaagcatgggtattctggtgatttagattttatcatatt 30776821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 3913561 - 3913506
Alignment:
Q  21 tcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||| |||||||||||||||||||| ||| |  |||||||||| ||||||||||||    
T  3913561 tcaacgttgcagatccagaagcatgggtatttcggtgatttaggttttatcatatt 3913506  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 74
Target Start/End: Complemental strand, 7976180 - 7976121
Alignment:
Q  15 tggacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcata 74  Q
    ||||| |||| |||| |||||| |||||||| ||| |||||||||||| |||||||||||    
T  7976180 tggacgtcaacgttgtagatccggaagcatgggtattctggtgatttaaattttatcata 7976121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 8102829 - 8102884
Alignment:
Q  21 tcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||| ||||||||||||||| ||||  || |||| |||||||||||||||||||||    
T  8102829 tcaacgttgcagatccagaaacatgaatattctgatgatttagattttatcatatt 8102884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 29 - 76
Target Start/End: Original strand, 34222906 - 34222953
Alignment:
Q  29 gcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||||||| ||||| |||||| ||||| ||||||||||||||||||||    
T  34222906 gcagatccggaagcctgtgtattctggcgatttagattttatcatatt 34222953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 26 - 76
Target Start/End: Complemental strand, 32327199 - 32327149
Alignment:
Q  26 gttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    ||||||||||| |||||||| ||| | ||||||||||| ||||||||||||    
T  32327199 gttgcagatccggaagcatgagtagtttggtgatttaggttttatcatatt 32327149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 1933685 - 1933624
Alignment:
Q  15 tggacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    ||||| |||| ||||||||||| ||| ||||  || |||||||||||| |||||||||||||    
T  1933685 tggacgtcaacgttgcagatccggaaacatgattattctggtgatttatattttatcatatt 1933624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 104; Significance: 5e-52; HSPs: 2)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 77 - 184
Target Start/End: Original strand, 19352 - 19459
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggatt 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  19352 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccggatt 19451  T
Q  177 cacaacaa 184  Q
    ||||||||    
T  19452 cacaacaa 19459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 77 - 184
Target Start/End: Original strand, 14497 - 14604
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggatt 176  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||    
T  14497 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgaaccggatt 14596  T
Q  177 cacaacaa 184  Q
    ||||||||    
T  14597 cacaacaa 14604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0028 (Bit Score: 104; Significance: 5e-52; HSPs: 1)
Name: scaffold0028
Description:

Target: scaffold0028; HSP #1
Raw Score: 104; E-Value: 5e-52
Query Start/End: Original strand, 77 - 184
Target Start/End: Original strand, 149143 - 149250
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggatt 176  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  149143 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccggatt 149242  T
Q  177 cacaacaa 184  Q
    ||||||||    
T  149243 cacaacaa 149250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0259 (Bit Score: 95; Significance: 1e-46; HSPs: 1)
Name: scaffold0259
Description:

Target: scaffold0259; HSP #1
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 77 - 183
Target Start/End: Original strand, 2438 - 2544
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggatt 176  Q
    ||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  2438 gcttggaggccatttgcactcatggattatctttatcacttgctccacacatcattgatttattctcattggtgtgaaggttcattagttgagccggatt 2537  T
Q  177 cacaaca 183  Q
    |||||||    
T  2538 cacaaca 2544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 94; Significance: 5e-46; HSPs: 2)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 77 - 186
Target Start/End: Original strand, 182152 - 182261
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggatt 176  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  182152 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggatt 182251  T
Q  177 cacaacaaaa 186  Q
    ||||||||||    
T  182252 cacaacaaaa 182261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 76
Target Start/End: Complemental strand, 58069 - 58020
Alignment:
Q  27 ttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||||||||| |||||||| ||| ||||||||||||||||| ||||||||    
T  58069 ttgcagatccggaagcatgagtattctggtgatttagatttcatcatatt 58020  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 94; Significance: 5e-46; HSPs: 18)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 94; E-Value: 5e-46
Query Start/End: Original strand, 77 - 186
Target Start/End: Original strand, 43988653 - 43988762
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggatt 176  Q
    ||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||    
T  43988653 gcttggaagccatttgctctcatagattatctctatcacttgctccacacatcattgatttattctcattggcgtgaaggttcattagttgagccggatt 43988752  T
Q  177 cacaacaaaa 186  Q
    ||||||||||    
T  43988753 cacaacaaaa 43988762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 65; E-Value: 9e-29
Query Start/End: Original strand, 75 - 187
Target Start/End: Complemental strand, 39445399 - 39445288
Alignment:
Q  75 ttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccgga 174  Q
    ||||||||| ||||||||  | ||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| || || || |||||    
T  39445399 ttgcttggaagccatttgttcacattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggttcgtttgtagaaccgga 39445301  T
Q  175 ttcacaacaaaaa 187  Q
    |||||||||||||    
T  39445300 ttcacaacaaaaa 39445288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 75 - 183
Target Start/End: Original strand, 25445275 - 25445382
Alignment:
Q  75 ttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccgga 174  Q
    ||||||||| ||||||||  ||||| ||||||| ||||| |||||||||||||||||||||||||| |||||||||||||||||| || || || |||||    
T  25445275 ttgcttggaagccatttgttctcattgattatcactatcgcttgctccacacatcattggtttatt-tcattggtgtgaaggttcgtttgtagaaccgga 25445373  T
Q  175 ttcacaaca 183  Q
    |||||||||    
T  25445374 ttcacaaca 25445382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 75 - 158
Target Start/End: Complemental strand, 41386648 - 41386566
Alignment:
Q  75 ttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt 158  Q
    |||||||||| |||||||  ||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  41386648 ttgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggtt 41386566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 75 - 158
Target Start/End: Original strand, 44024058 - 44024140
Alignment:
Q  75 ttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt 158  Q
    ||||||||| ||||||||  ||||| ||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||    
T  44024058 ttgcttggaagccatttgttctcattgattatcactatcagttgctccacacatcattggtttatt-tcattggtgtgaaggtt 44024140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 101 - 183
Target Start/End: Original strand, 1055223 - 1055304
Alignment:
Q  101 gattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaaca 183  Q
    ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||  | || || ||||||||||||||    
T  1055223 gattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggttcgattgtagaaccggattcacaaca 1055304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 75 - 158
Target Start/End: Complemental strand, 41398137 - 41398055
Alignment:
Q  75 ttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt 158  Q
    |||||||||| |||| ||  ||||| ||||||| |||||||||||||||||||| ||||||||||| |||||||||||||||||    
T  41398137 ttgcttggagaccatatgttctcattgattatcactatcacttgctccacacataattggtttatt-tcattggtgtgaaggtt 41398055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 14 - 76
Target Start/End: Complemental strand, 34413086 - 34413024
Alignment:
Q  14 atggacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||||| |||| |||| ||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  34413086 atggacgtcaacgttgtagatccagaagcatgggtattctggtgatttagatttcatcatatt 34413024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 19061008 - 19061069
Alignment:
Q  15 tggacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    ||||||||||||||| ||||||||||| | | ||| |||||||||||||||| |||||||||    
T  19061008 tggacatcaatgttgtagatccagaaggaagagtattctggtgatttagattatatcatatt 19061069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 37720136 - 37720081
Alignment:
Q  21 tcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||| |||||||||||| ||||||| ||| |||||| |||||||||||||||||||    
T  37720136 tcaacgttgcagatccaaaagcatgggtattctggttatttagattttatcatatt 37720081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 43412479 - 43412534
Alignment:
Q  21 tcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||| |||||||||||||||||||| ||| | ||||||| ||||||||||||||||    
T  43412479 tcaacgttgcagatccagaagcatgcgtattttggtgatctagattttatcatatt 43412534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 48750290 - 48750345
Alignment:
Q  21 tcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||| |||||||||||| ||||||| ||| ||||||||||||||||| ||||||||    
T  48750290 tcaacgttgcagatccataagcatgggtattctggtgatttagatttcatcatatt 48750345  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 19 - 73
Target Start/End: Original strand, 16262964 - 16263018
Alignment:
Q  19 catcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcat 73  Q
    |||||| ||||||||||| |||||||| ||| |||| ||||||||||||||||||    
T  16262964 catcaacgttgcagatccggaagcatgagtattctgatgatttagattttatcat 16263018  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 24583049 - 24583110
Alignment:
Q  15 tggacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    ||||| |||| |||||||||||||||||| |  || |||||||||||||||| |||||||||    
T  24583049 tggacgtcaacgttgcagatccagaagcaagaatattctggtgatttagattatatcatatt 24583110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 44543371 - 44543432
Alignment:
Q  15 tggacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    ||||| |||| |||||||||||||||||| | ||| ||| |||||||||||| |||||||||    
T  44543371 tggacgtcaacgttgcagatccagaagcaagagtattctagtgatttagattatatcatatt 44543432  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 27 - 76
Target Start/End: Original strand, 47133014 - 47133063
Alignment:
Q  27 ttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||||||||| |||||||| ||| ||||||||||||||||| ||||||||    
T  47133014 ttgcagatccggaagcatgagtattctggtgatttagatttcatcatatt 47133063  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 19 - 75
Target Start/End: Complemental strand, 41081674 - 41081618
Alignment:
Q  19 catcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatat 75  Q
    |||||||||||||||||| || ||||||||| |||||| ||||  ||||||||||||    
T  41081674 catcaatgttgcagatccggaggcatgtgtattctggtcattttaattttatcatat 41081618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 9341825 - 9341886
Alignment:
Q  15 tggacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    ||||| |||| | ||||||| ||| ||||||| || |||||||| |||||||||||||||||    
T  9341825 tggacgtcaacgatgcagattcaggagcatgtatattctggtgacttagattttatcatatt 9341886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 92; Significance: 7e-45; HSPs: 21)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 16879970 - 16879863
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggatt 176  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  16879970 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggatt 16879871  T
Q  177 cacaacaa 184  Q
    ||||||||    
T  16879870 cacaacaa 16879863  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 92; E-Value: 7e-45
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 16884826 - 16884719
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggatt 176  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  16884826 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggatt 16884727  T
Q  177 cacaacaa 184  Q
    ||||||||    
T  16884726 cacaacaa 16884719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 77 - 183
Target Start/End: Original strand, 24266390 - 24266496
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggatt 176  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||    
T  24266390 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgagccggatt 24266489  T
Q  177 cacaaca 183  Q
    |||||||    
T  24266490 cacaaca 24266496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 77 - 184
Target Start/End: Original strand, 24261511 - 24261618
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggatt 176  Q
    ||||||||||||||||||||||||||||| ||||||| ||||||||||||||| ||| |||||||||||||||||||||||||||||||||| |||||||    
T  24261511 gcttggaggccatttgcactcatagattacctctatctcttgctccacacatctttgatttattctcattggtgtgaaggttcattagttgaaccggatt 24261610  T
Q  177 cacaacaa 184  Q
    ||||||||    
T  24261611 cacaacaa 24261618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 77 - 183
Target Start/End: Complemental strand, 19992210 - 19992104
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt-cattagttgagccggat 175  Q
    ||||||| ||||||||  ||||| ||||||| ||||||| ||||||||||||| |||||||||| ||||||||||||||||| |||||||||| ||||||    
T  19992210 gcttggaagccatttgttctcattgattatcactatcacctgctccacacatctttggtttatt-tcattggtgtgaaggttccattagttgaaccggat 19992112  T
Q  176 tcacaaca 183  Q
    ||||||||    
T  19992111 tcacaaca 19992104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 60; E-Value: 9e-26
Query Start/End: Original strand, 77 - 183
Target Start/End: Original strand, 21812426 - 21812532
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaagg-ttcattagttgagccggat 175  Q
    ||||||| ||||||||| ||||||||||| | ||||| ||||||||||||||| |||||||||| ||||||||||||||| ||||||||||||  |||||    
T  21812426 gcttggaagccatttgctctcatagattaccactatctcttgctccacacatctttggtttatt-tcattggtgtgaaggtttcattagttgaatcggat 21812524  T
Q  176 tcacaaca 183  Q
    ||||||||    
T  21812525 tcacaaca 21812532  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 75 - 158
Target Start/End: Original strand, 24024513 - 24024594
Alignment:
Q  75 ttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt 158  Q
    |||||||||| |||||||  ||||| ||||| | |||||||||||||||||||||||| ||||||| |||||||||||||||||    
T  24024513 ttgcttggagaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtgaaggtt 24024594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 31109770 - 31109849
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt 158  Q
    |||||||| |||||||  ||||| ||||||| |||||||||||| ||||||||||| ||||||| |||||||||||||||||    
T  31109770 gcttggagaccatttgttctcattgattatcactatcacttgctgcacacatcatt-gtttatt-tcattggtgtgaaggtt 31109849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 158
Target Start/End: Complemental strand, 4866629 - 4866548
Alignment:
Q  75 ttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt 158  Q
    |||||||||| |||||||  ||||| ||||| | ||||| |||||||||||||||||| ||||||| |||||||||||||||||    
T  4866629 ttgcttggagaccatttgtcctcattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtgaaggtt 4866548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 158
Target Start/End: Complemental strand, 12396811 - 12396730
Alignment:
Q  75 ttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt 158  Q
    |||||||||| |||||||  ||||| ||||| | ||||| |||||||||||||||||| ||||||| |||||||||||||||||    
T  12396811 ttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtgaaggtt 12396730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 158
Target Start/End: Complemental strand, 12406231 - 12406150
Alignment:
Q  75 ttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt 158  Q
    |||||||||| |||||||  ||||| ||||| | ||||| |||||||||||||||||| ||||||| |||||||||||||||||    
T  12406231 ttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtgaaggtt 12406150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 22743048 - 22743103
Alignment:
Q  21 tcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||| |||||||||||||||||||| ||| ||||||||||||||||| ||||||||    
T  22743048 tcaacgttgcagatccagaagcatgagtattctggtgatttagatttcatcatatt 22743103  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 24350826 - 24350771
Alignment:
Q  21 tcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||| |||||||||||||||||||| ||| |||||||||||| |||| ||||||||    
T  24350826 tcaacgttgcagatccagaagcatgggtattctggtgatttaaatttcatcatatt 24350771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 35665122 - 35665067
Alignment:
Q  21 tcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    ||||||||||||| ||| ||||||||||| | | ||||||||||||||||||||||    
T  35665122 tcaatgttgcagacccataagcatgtgtattttagtgatttagattttatcatatt 35665067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 969452 - 969391
Alignment:
Q  15 tggacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    ||||| ||||| |||||||| || ||||||| ||| ||| ||||||||||||||||||||||    
T  969452 tggacgtcaatattgcagattcataagcatgagtattctagtgatttagattttatcatatt 969391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 9450140 - 9450069
Alignment:
Q  5 agcaatgagatggacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    ||||||||  ||||| |||| ||||||||||| |||||||| ||| | | ||||||||| ||||||||||||    
T  9450140 agcaatgatttggacgtcaacgttgcagatccggaagcatgggtattttagtgatttaggttttatcatatt 9450069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 24069381 - 24069326
Alignment:
Q  21 tcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||| |||||||| || |||||||| | | ||||||||||||||||||||||||||    
T  24069381 tcaacgttgcagacccggaagcatgaggattctggtgatttagattttatcatatt 24069326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 28476331 - 28476385
Alignment:
Q  21 tcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||| |||||||||||||||| ||| ||| || |||||||||||||||||||||||    
T  28476331 tcaacgttgcagatccagaagtatgggtattc-ggtgatttagattttatcatatt 28476385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 35133051 - 35133106
Alignment:
Q  21 tcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||| |||||||||||| ||||||| ||| ||| ||||||||||||| ||||||||    
T  35133051 tcaacgttgcagatccaaaagcatgagtattctagtgatttagatttcatcatatt 35133106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 48930811 - 48930866
Alignment:
Q  21 tcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||| ||||||||||||||| |||  ||| ||||||||||||||||| ||||||||    
T  48930811 tcaacgttgcagatccagaaacattggtattctggtgatttagatttcatcatatt 48930866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 12141301 - 12141240
Alignment:
Q  15 tggacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    ||||| |||| ||||||||||| |||||||| ||| |  ||||| |||||||||||||||||    
T  12141301 tggacgtcaacgttgcagatccggaagcatgggtatttcggtgacttagattttatcatatt 12141240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 77 - 184
Target Start/End: Complemental strand, 19349176 - 19349069
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaagg-ttcattagttgagccggat 175  Q
    ||||||||||||||||| ||||||||||| | ||||| ||||||||||||||| |||||||||| ||||||||||||||| |||||||||||| ||||||    
T  19349176 gcttggaggccatttgctctcatagattaccactatctcttgctccacacatctttggtttatt-tcattggtgtgaaggtttcattagttgaaccggat 19349078  T
Q  176 tcacaacaa 184  Q
    |||||||||    
T  19349077 tcacaacaa 19349069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 77 - 183
Target Start/End: Complemental strand, 19344318 - 19344212
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaagg-ttcattagttgagccggat 175  Q
    ||||||||||||||||| ||||||||||| | ||||| ||||||||||||||| |||||||||| ||||||||||||||| |||||||||||| ||||||    
T  19344318 gcttggaggccatttgctctcatagattaccactatctcttgctccacacatctttggtttatt-tcattggtgtgaaggtttcattagttgaaccggat 19344220  T
Q  176 tcacaaca 183  Q
    ||||||||    
T  19344219 tcacaaca 19344212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 77 - 183
Target Start/End: Complemental strand, 32246682 - 32246577
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggatt 176  Q
    |||||||| |||||||  ||||||||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||  || || || |||||||    
T  32246682 gcttggagaccatttgttctcatagattaccactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggtttctttgtagaaccggatt 32246584  T
Q  177 cacaaca 183  Q
    |||||||    
T  32246583 cacaaca 32246577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 77 - 158
Target Start/End: Original strand, 39812175 - 39812255
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt 158  Q
    |||||||| |||||||  ||||| ||||||| ||||||||||||||||||||| |||||||||| |||||||||||||||||    
T  39812175 gcttggagaccatttgttctcattgattatcactatcacttgctccacacatctttggtttatt-tcattggtgtgaaggtt 39812255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 10929771 - 10929832
Alignment:
Q  15 tggacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||||||||| ||||||||||| |||||||||||| |||||||||||| |||||||||||||    
T  10929771 tggacatcaacgttgcagatccggaagcatgtgtattctggtgatttaaattttatcatatt 10929832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 75 - 155
Target Start/End: Original strand, 44312809 - 44312887
Alignment:
Q  75 ttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaag 155  Q
    |||||||||| |||||||  ||||| ||||| | |||||||||||||||||||||||| ||||||| ||||||||||||||    
T  44312809 ttgcttggagaccatttgttctcattgattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtgaag 44312887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 14955641 - 14955696
Alignment:
Q  21 tcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||| ||||||||||||||| |||||||| |||| |||||||||||||||||||||    
T  14955641 tcaacgttgcagatccagaaacatgtgtattctgatgatttagattttatcatatt 14955696  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 10237210 - 10237149
Alignment:
Q  15 tggacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    ||||| |||| |||||||||||||||||||| ||| |||| |||||||||||| ||||||||    
T  10237210 tggacgtcaacgttgcagatccagaagcatgggtattctgatgatttagatttcatcatatt 10237149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 26 - 76
Target Start/End: Original strand, 3309062 - 3309112
Alignment:
Q  26 gttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||||||||||||||||||| ||| |||||||||||| |||| ||||||||    
T  3309062 gttgcagatccagaagcatgggtattctggtgatttatatttcatcatatt 3309112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 17249141 - 17249080
Alignment:
Q  15 tggacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    ||||| |||| |||||||||||| ||||| | ||| |||||||||||||||| |||||||||    
T  17249141 tggacgtcaacgttgcagatccataagcaagagtattctggtgatttagattatatcatatt 17249080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 41694731 - 41694788
Alignment:
Q  19 catcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||||| ||||||||| |||||||||||  | |||||||| |||||||||||||||||    
T  41694731 catcaacgttgcagatgcagaagcatgtagattctggtgacttagattttatcatatt 41694788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 1421772 - 1421843
Alignment:
Q  5 agcaatgagatggacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    ||||||||  ||||| |||| ||||||||||| |||||||| ||| |  |||||||||| ||||||||||||    
T  1421772 agcaatgatttggacgtcaacgttgcagatccggaagcatgggtatttcggtgatttaggttttatcatatt 1421843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 66
Target Start/End: Complemental strand, 32448613 - 32448562
Alignment:
Q  15 tggacatcaatgttgcagatccagaagcatgtgtactctggtgatttagatt 66  Q
    ||||| |||| |||||||||||||||||| | ||| ||||||||||||||||    
T  32448613 tggacgtcaacgttgcagatccagaagcaagagtattctggtgatttagatt 32448562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 61; Significance: 2e-26; HSPs: 21)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 75 - 183
Target Start/End: Complemental strand, 3813923 - 3813816
Alignment:
Q  75 ttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccgga 174  Q
    |||||||||| |||||||| ||||| ||||| | |||||||||||||||||||||||||||||||| |||||||||||||||||  || || || |||||    
T  3813923 ttgcttggagaccatttgctctcattgattaccactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggtttctttgtagaaccgga 3813825  T
Q  175 ttcacaaca 183  Q
    |||||||||    
T  3813824 ttcacaaca 3813816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 75 - 183
Target Start/End: Complemental strand, 18855626 - 18855519
Alignment:
Q  75 ttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccgga 174  Q
    ||||||||| ||||||||  ||||| ||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||  | || || |||||    
T  18855626 ttgcttggaagccatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggttcgcttgtagaaccgga 18855528  T
Q  175 ttcacaaca 183  Q
    |||||||||    
T  18855527 ttcacaaca 18855519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 77 - 183
Target Start/End: Original strand, 45348005 - 45348109
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggatt 176  Q
    ||||| || |||||||  ||||||||||| | |||||||||||||||||||||||| ||||||| |||||||||||||||||  || || || |||||||    
T  45348005 gcttgaagaccatttgttctcatagattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtgaaggtttctttgtagaaccggatt 45348102  T
Q  177 cacaaca 183  Q
    |||||||    
T  45348103 cacaaca 45348109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 47; E-Value: 5e-18
Query Start/End: Original strand, 77 - 183
Target Start/End: Original strand, 45357484 - 45357588
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggatt 176  Q
    ||||| || |||||||  ||||||||||| | |||||||||||||||||||||||| ||||||| |||||||||||||||||  || || || |||||||    
T  45357484 gcttgaagaccatttgttctcatagattaccactatcacttgctccacacatcatt-gtttatt-tcattggtgtgaaggtttctttgtagaaccggatt 45357581  T
Q  177 cacaaca 183  Q
    |||||||    
T  45357582 cacaaca 45357588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 75 - 184
Target Start/End: Original strand, 9224592 - 9224699
Alignment:
Q  75 ttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccgga 174  Q
    |||||||||| |||||||  ||||| ||||| | ||||| |||||||||||||||||| ||||||| |||||||||||||||||  ||  |||| |||||    
T  9224592 ttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtgaaggttttttttttgaaccgga 9224689  T
Q  175 ttcacaacaa 184  Q
    ||||||||||    
T  9224690 ttcacaacaa 9224699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 17 - 74
Target Start/End: Complemental strand, 22038793 - 22038736
Alignment:
Q  17 gacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcata 74  Q
    ||||||||||||||||||||||||||||||||| |  ||||||||| |||||||||||    
T  22038793 gacatcaatgttgcagatccagaagcatgtgtatttcggtgatttaaattttatcata 22038736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 158
Target Start/End: Original strand, 9229379 - 9229460
Alignment:
Q  75 ttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt 158  Q
    |||||||||| |||||||  ||||| ||||| | ||||| |||||||||||||||||| ||||||| |||||||||||||||||    
T  9229379 ttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtgaaggtt 9229460  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 17 - 76
Target Start/End: Original strand, 36194826 - 36194885
Alignment:
Q  17 gacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||||||| ||||||||||||||| |||| ||| ||||||||||||||||| ||||||||    
T  36194826 gacatcaaagttgcagatccagaaacatgggtattctggtgatttagatttcatcatatt 36194885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 77 - 187
Target Start/End: Complemental strand, 5732559 - 5732454
Alignment:
Q  77 gcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggatt 176  Q
    |||||||| |||||||  ||||| ||||| | | |||||||||||||||||||||||   |||| |||||||||||||||||  ||  | || |||||||    
T  5732559 gcttggagaccatttgttctcattgattaccaccatcacttgctccacacatcattg---tattttcattggtgtgaaggtttctt--tggaaccggatt 5732465  T
Q  177 cacaacaaaaa 187  Q
    |||||||||||    
T  5732464 cacaacaaaaa 5732454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Complemental strand, 47320405 - 47320344
Alignment:
Q  15 tggacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    ||||| |||| |||||||||||||||||| | ||| |||||||||||||||| |||||||||    
T  47320405 tggacgtcaacgttgcagatccagaagcaagagtattctggtgatttagattatatcatatt 47320344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 76
Target Start/End: Original strand, 52944427 - 52944488
Alignment:
Q  15 tggacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    ||||| |||| ||||||||||| |||||||| ||| ||||||||||||||||| ||||||||    
T  52944427 tggacgtcaacgttgcagatccggaagcatgggtattctggtgatttagatttcatcatatt 52944488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 5 - 76
Target Start/End: Complemental strand, 21686245 - 21686174
Alignment:
Q  5 agcaatgagatggacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    ||||||||  ||||| |||| ||||||||||| |||||||| ||| | ||||||||||| ||||||||||||    
T  21686245 agcaatgatttggacgtcaacgttgcagatccggaagcatgagtattttggtgatttaggttttatcatatt 21686174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 31359733 - 31359678
Alignment:
Q  21 tcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||| ||||||||| | |||||||||||| |||||||||||||||||| |||||||    
T  31359733 tcaacgttgcagattccgaagcatgtgtaatctggtgatttagattttctcatatt 31359678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 75 - 153
Target Start/End: Complemental strand, 51520356 - 51520280
Alignment:
Q  75 ttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtga 153  Q
    |||||||||| |||||||  ||||| ||||| | ||||| |||||||||||||||||| ||||||| ||||||||||||    
T  51520356 ttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtga 51520280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 76
Target Start/End: Original strand, 18935902 - 18935959
Alignment:
Q  19 catcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||||| |||||||||||| ||||||  ||| ||||||||||||||||| ||||||||    
T  18935902 catcaacgttgcagatccaaaagcataggtattctggtgatttagatttcatcatatt 18935959  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 5 - 76
Target Start/End: Original strand, 2520885 - 2520956
Alignment:
Q  5 agcaatgagatggacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    ||||||||  ||||| |||| ||||||||||| |||||||| ||| |  |||||||||||||||||| ||||    
T  2520885 agcaatgatttggacgtcaacgttgcagatccggaagcatgggtatttcggtgatttagattttatcgtatt 2520956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 76
Target Start/End: Complemental strand, 31891274 - 31891219
Alignment:
Q  21 tcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||| |||||| ||||||||||||| ||| ||||||||||||||||| || |||||    
T  31891274 tcaacgttgcaaatccagaagcatgagtattctggtgatttagatttcattatatt 31891219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 154
Target Start/End: Original strand, 56146897 - 56146974
Alignment:
Q  75 ttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaa 154  Q
    |||||||||| ||| |||  ||||| ||||| | ||||| |||||||||||||||||| ||||||| |||||||||||||    
T  56146897 ttgcttggagaccaattgttctcattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtgaa 56146974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 76
Target Start/End: Complemental strand, 51888180 - 51888143
Alignment:
Q  39 aagcatgtgtactctggtgatttagattttatcatatt 76  Q
    ||||||| ||| ||||||||||||||||||||||||||    
T  51888180 aagcatgagtattctggtgatttagattttatcatatt 51888143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 33 - 77
Target Start/End: Complemental strand, 9145866 - 9145822
Alignment:
Q  33 atccagaagcatgtgtactctggtgatttagattttatcatattg 77  Q
    |||| |||||||| ||| |||||||||||||||| ||||||||||    
T  9145866 atccggaagcatgagtattctggtgatttagattgtatcatattg 9145822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 76
Target Start/End: Original strand, 27652065 - 27652120
Alignment:
Q  20 atcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    ||||| |||||||||||||||||||| ||| ||| ||| ||||||||| ||||||||    
T  27652065 atcaacgttgcagatccagaagcatgggtattctagtg-tttagatttcatcatatt 27652120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 58; Significance: 1e-24; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 75 - 184
Target Start/End: Complemental strand, 262 - 154
Alignment:
Q  75 ttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccgga 174  Q
    ||||||||| ||||||||  ||||| ||||||| | ||||||||||||||||||| |||||||||| |||||||||||||||||| || || || |||||    
T  262 ttgcttggaagccatttgttctcattgattatcaccatcacttgctccacacatctttggtttatt-tcattggtgtgaaggttcgtttgtagaaccgga 164  T
Q  175 ttcacaacaa 184  Q
    ||||||||||    
T  163 ttcacaacaa 154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355 (Bit Score: 56; Significance: 2e-23; HSPs: 2)
Name: scaffold0355
Description:

Target: scaffold0355; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 79 - 158
Target Start/End: Original strand, 9829 - 9907
Alignment:
Q  79 ttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt 158  Q
    |||||| |||||||| ||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  9829 ttggagaccatttgctctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggtt 9907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0355; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 110 - 158
Target Start/End: Original strand, 101 - 148
Alignment:
Q  110 tatcacttgctccacacatcattggtttattctcattggtgtgaaggtt 158  Q
    ||||||||||||||||||||||||||||||| | |||||||||||||||    
T  101 tatcacttgctccacacatcattggtttatt-taattggtgtgaaggtt 148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0127 (Bit Score: 56; Significance: 2e-23; HSPs: 1)
Name: scaffold0127
Description:

Target: scaffold0127; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 75 - 158
Target Start/End: Original strand, 34134 - 34216
Alignment:
Q  75 ttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt 158  Q
    |||||||||| |||||||  ||||| ||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||    
T  34134 ttgcttggagaccatttgttctcattgattatcactatcacttgctccacacatcattggtttatt-tcattggtgtgaaggtt 34216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0777 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold0777
Description:

Target: scaffold0777; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 135 - 184
Target Start/End: Complemental strand, 6341 - 6292
Alignment:
Q  135 tttattctcattggtgtgaaggttcattagttgagccggattcacaacaa 184  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6341 tttattctcattggtgtgaaggttcattagttgagccggattcacaacaa 6292  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0479 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: scaffold0479
Description:

Target: scaffold0479; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 95 - 184
Target Start/End: Complemental strand, 13228 - 13140
Alignment:
Q  95 ctcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggttcattagttgagccggattcacaacaa 184  Q
    ||||| ||||||| ||||||||||||||||| ||| |||||||||| |||||||||||||||||| || || || |||||||||||||||    
T  13228 ctcattgattatcactatcacttgctccacatatctttggtttatt-tcattggtgtgaaggttcgtttgtagaaccggattcacaacaa 13140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0347 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0347
Description:

Target: scaffold0347; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 21 - 76
Target Start/End: Original strand, 6132 - 6187
Alignment:
Q  21 tcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||||||||||||||| |||||||||||| ||||||||||||||||||||||||||    
T  6132 tcaatgttgcagatccggaagcatgtgtattctggtgatttagattttatcatatt 6187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0135 (Bit Score: 40; Significance: 0.00000000000008; HSPs: 1)
Name: scaffold0135
Description:

Target: scaffold0135; HSP #1
Raw Score: 40; E-Value: 0.00000000000008
Query Start/End: Original strand, 75 - 158
Target Start/End: Original strand, 35247 - 35328
Alignment:
Q  75 ttgcttggaggccatttgcactcatagattatctctatcacttgctccacacatcattggtttattctcattggtgtgaaggtt 158  Q
    |||||||||| |||||||  ||||| ||||| | ||||| |||||||||||||||||| ||||||| |||||||||||||||||    
T  35247 ttgcttggagaccatttgttctcattgattaccactatctcttgctccacacatcatt-gtttatt-tcattggtgtgaaggtt 35328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0039 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: scaffold0039
Description:

Target: scaffold0039; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 86
Target Start/End: Original strand, 93204 - 93274
Alignment:
Q  16 ggacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatattgcttggaggc 86  Q
    |||| |||| |||||||||||||||  ||| ||| |||||||||||| |||||||||||||| ||| ||||    
T  93204 ggacgtcaacgttgcagatccagaaatatgggtattctggtgatttaaattttatcatattgtttgtaggc 93274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0888 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0888
Description:

Target: scaffold0888; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 31 - 76
Target Start/End: Complemental strand, 1655 - 1610
Alignment:
Q  31 agatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||||||||| |||| ||| ||||||||||||||||||||||||||    
T  1655 agatccagaaacatgggtattctggtgatttagattttatcatatt 1610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0121 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0121
Description:

Target: scaffold0121; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 19 - 76
Target Start/End: Complemental strand, 31263 - 31206
Alignment:
Q  19 catcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatatt 76  Q
    |||||||||||||||||| |||||||| ||| |  ||||| |||||||||||||||||    
T  31263 catcaatgttgcagatccggaagcatgggtatttcggtgacttagattttatcatatt 31206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0042 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0042
Description:

Target: scaffold0042; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 86
Target Start/End: Complemental strand, 92489 - 92418
Alignment:
Q  15 tggacatcaatgttgcagatccagaagcatgtgtactctggtgatttagattttatcatattgcttggaggc 86  Q
    ||||| |||| |||| ||||||||||||||| ||| ||||||  |||| |||||||||||||| ||| ||||    
T  92489 tggacgtcaacgttgtagatccagaagcatgggtattctggtagtttaaattttatcatattgtttgtaggc 92418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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