View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0200_1D_low_3 (Length: 674)
Name: NF0200_1D_low_3
Description: NF0200_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0200_1D_low_3 |
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| [»] chr6 (4 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 584; Significance: 0; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 584; E-Value: 0
Query Start/End: Original strand, 55 - 674
Target Start/End: Original strand, 23332595 - 23333214
Alignment:
| Q |
55 |
atatgtggacgaatgagcgatagaagcgcatgaccgatccaccctcacgttggacaatcattttcgacatgggaggaagaaatttgttaggatagttgat |
154 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23332595 |
atatatggacgaatgagcgatagaagcgcatgaccgatccaccctcacgtgggacaatcattttcgacatgggaggaagaaatttgttaggatagttgat |
23332694 |
T |
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| Q |
155 |
ttcgactcctgatctctctgcgatagtcatatctagaagattcggctgtacataagtcagggtgacccacgcaccacgatctaccttatagaaacccttc |
254 |
Q |
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| T |
23332695 |
ttcgactcctgatctctctgcgatagtcatatctagaagattcggctgtacatacgtcagggtgacccacgcaccacgatctaccttatagaaacccttc |
23332794 |
T |
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| Q |
255 |
agctcagcccaaccatcccgcagatagaccttgccatttttcacgtggaccttgacctcgaacatgtttctgtttggatcacgcaacatgacataatcat |
354 |
Q |
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| T |
23332795 |
agctcagcccaaccatcccgcagataaaccttgccatttttcacgtggaccttgaccttgaacatgtttctgtttggatcacgcaacatgacataatcat |
23332894 |
T |
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| Q |
355 |
caacatgcacaccatattccttggcgaaacacgatggcaaccttgtcttcggctgaccaacacatcaaacacatgacacggttagttccaatcaacatac |
454 |
Q |
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| T |
23332895 |
caacatgcaaaccatattccttggcgaaacacgatggcaaccttgtcttcggctgaccaacacatcaaacacatgacacggttagttccaatcaacatac |
23332994 |
T |
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| Q |
455 |
caaaacagtgcaatgcccactaatgaaccgactaactacatagcatgaatgataattgacagtcttgatcctaacttgacaaccaagaaatatcagcgta |
554 |
Q |
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| T |
23332995 |
caaaacagtgcaatgcccacaaatgaaccgactaactacatagcatgaatgataattgacagtcttgatcctaacttgacaaccaagaaatatcagcgta |
23333094 |
T |
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| Q |
555 |
agtattgtataactttcagaaaatgcaccaagaaacaaataagtcttcgtagcattacattccaaaagtagccaaattaaaaccatcgcctaatattcaa |
654 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
23333095 |
agtattgtataactttcagaaaatgcaccaagaaacaaataagtcttcatagcattactttccaaaagtagccaaattaaaaccatcgcctaatattcaa |
23333194 |
T |
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| Q |
655 |
aacaacatgtggccagcaaa |
674 |
Q |
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| T |
23333195 |
aacaacatgtggccagcaaa |
23333214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 282 - 376
Target Start/End: Complemental strand, 10955166 - 10955074
Alignment:
| Q |
282 |
accttgccatttttcacgtggaccttgacctcgaacatgtttctgtttggatcacgcaacatgacataatcatcaacatgcacaccatattcctt |
376 |
Q |
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|||||||| || ||| ||||||||| |||||||||||||| |||| |||||||||| |||||||| |||||||| |||| |||||||||||| |
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| T |
10955166 |
accttgcccttcttcttgtggaccttaacctcgaacatgttcttgttaggatcacgca--atgacatagtcatcaacgtgcaaaccatattcctt |
10955074 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 23322331 - 23322373
Alignment:
| Q |
18 |
gacatcaccaaacacaatcgttgtaaaatccaaacgcatatgt |
60 |
Q |
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| T |
23322331 |
gacatcaccaaacacaaacgttgtaaactccaaacgcatatgt |
23322373 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 23332498 - 23332540
Alignment:
| Q |
18 |
gacatcaccaaacacaatcgttgtaaaatccaaacgcatatgt |
60 |
Q |
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| T |
23332498 |
gacatcaccaaacacaaacgttgtaaactccaaacgcatatgt |
23332540 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 282 - 349
Target Start/End: Original strand, 2027692 - 2027759
Alignment:
| Q |
282 |
accttgccatttttcacgtggaccttgacctcgaacatgtttctgtttggatcacgcaacatgacata |
349 |
Q |
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||||||||||||||| ||| || || ||||| |||||||| |||||||||||||||| |||||||| |
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| T |
2027692 |
accttgccatttttcttgtgaactttaacctcaaacatgttcttgtttggatcacgcaaaatgacata |
2027759 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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