View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0200_1D_low_30 (Length: 215)
Name: NF0200_1D_low_30
Description: NF0200_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0200_1D_low_30 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 203; Significance: 1e-111; HSPs: 6)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 1411124 - 1410914
Alignment:
| Q |
1 |
tcagaagctcttcctgatatgtttccaaagaagcttattccgttaggagattgaacacctgtgaatgttgcatatacagttccagtatccgaatttgaat |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||| |
|
|
| T |
1411124 |
tcagaagctcttcctgatatgtttccaaagaagcttattccgttaggagattgaacacctgtaaatgttgcatatacagttccggtatccgaatttgaat |
1411025 |
T |
|
| Q |
101 |
caccaaagttataaattgcagggtacacacatttgctagagttactattgccattcttctcacttgagacttgaataaatgtacatgccacataaagatt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1411024 |
caccaaagttataaattgcagggtacacacatttgctagagttactattgccattcttctcacttgagacttgaataaatgtacatgccacataaagatt |
1410925 |
T |
|
| Q |
201 |
gaaacaccaaa |
211 |
Q |
| |
|
||||||||||| |
|
|
| T |
1410924 |
gaaacaccaaa |
1410914 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 1 - 135
Target Start/End: Complemental strand, 1414500 - 1414366
Alignment:
| Q |
1 |
tcagaagctcttcctgatatgtttccaaagaagcttattccgttaggagattgaacacctgtgaatgttgcatatacagttccagtatccgaatttgaat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||| |||||||||||| |||||||||||| |||||||| | |
|
|
| T |
1414500 |
tcagaagctcttcctgatatgtttccaaagaagcttattccattaggaggttgaacacttgtatatgttgcatatatagttccagtatctgaatttgagt |
1414401 |
T |
|
| Q |
101 |
caccaaagttataaattgcagggtacacacatttg |
135 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
|
|
| T |
1414400 |
caccaaagttataaattgcagggtacacacatttg |
1414366 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 67; E-Value: 6e-30
Query Start/End: Original strand, 1 - 133
Target Start/End: Complemental strand, 1420046 - 1419917
Alignment:
| Q |
1 |
tcagaagctcttcctgatatgtttccaaagaagcttattccgttaggagattgaacacctgtgaatgttgcatatacagttccagtatccgaatttgaat |
100 |
Q |
| |
|
||||||||||| |||||||||||||||||| ||||| || ||||||| |||| || | ||| ||||||||| ||||||||||||| |||||||| | |
|
|
| T |
1420046 |
tcagaagctctccctgatatgtttccaaag---cttatgccattaggaggttgattacataagaaagttgcatatgcagttccagtatctgaatttgagt |
1419950 |
T |
|
| Q |
101 |
caccaaagttataaattgcagggtacacacatt |
133 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
1419949 |
caccaaagttataaattgcagggtacacacatt |
1419917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 1408242 - 1408109
Alignment:
| Q |
1 |
tcagaagctcttcctgatatgtttccaaagaagcttattccgttaggagattgaacacctgtgaatgttgcatatacagttccagtatccgaatttgaat |
100 |
Q |
| |
|
|||||||||||||||| || |||||||| ||||||| || ||||||| |||| ||||| || |||||| | | | ||||||||| |||||||| | |
|
|
| T |
1408242 |
tcagaagctcttcctgtggtgcttccaaagtagcttataccattaggaggcgtaacagctgtgtatattgcatttgctgctccagtatctgaatttgagt |
1408143 |
T |
|
| Q |
101 |
caccaaagttataaattgcagggtacacacattt |
134 |
Q |
| |
|
||||||| || ||||||||||||||| ||||||| |
|
|
| T |
1408142 |
caccaaaattgtaaattgcagggtactcacattt |
1408109 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 162 - 211
Target Start/End: Complemental strand, 1419912 - 1419863
Alignment:
| Q |
162 |
acttgagacttgaataaatgtacatgccacataaagattgaaacaccaaa |
211 |
Q |
| |
|
|||||| ||||||||||||||||||| |||||| || ||||||||||||| |
|
|
| T |
1419912 |
acttgaaacttgaataaatgtacatgtcacatacaggttgaaacaccaaa |
1419863 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 160 - 211
Target Start/End: Complemental strand, 1414365 - 1414314
Alignment:
| Q |
160 |
tcacttgagacttgaataaatgtacatgccacataaagattgaaacaccaaa |
211 |
Q |
| |
|
|||||||| |||||||||||| |||||| |||||| || ||||||||||||| |
|
|
| T |
1414365 |
tcacttgaaacttgaataaatttacatgtcacatacaggttgaaacaccaaa |
1414314 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000005; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 134
Target Start/End: Complemental strand, 3600632 - 3600507
Alignment:
| Q |
9 |
tcttcctgatatgtttccaaagaagcttattccgttaggagattgaacacctgtgaatgttgcatatacagttccagtatccgaatttgaatcaccaaag |
108 |
Q |
| |
|
||||||||| ||| |||||||||||||||| || |||||| | |||| ||| | |||||||||| ||| ||||||||| ||||| || ||||||||| |
|
|
| T |
3600632 |
tcttcctgagatgcttccaaagaagcttataccattaggatgctcaacagctgccattgttgcatatccagctccagtatctgaattggagtcaccaaag |
3600533 |
T |
|
| Q |
109 |
ttataaattgcagggtacacacattt |
134 |
Q |
| |
|
|| || ||||| ||||| |||||||| |
|
|
| T |
3600532 |
ttgtatattgctgggtagacacattt |
3600507 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 9 - 134
Target Start/End: Complemental strand, 14339499 - 14339374
Alignment:
| Q |
9 |
tcttcctgatatgtttccaaagaagcttattccgttaggagattgaacacctgtgaatgttgcatatacagttccagtatccgaatttgaatcaccaaag |
108 |
Q |
| |
|
||||||||| ||| |||||||||||||||| || |||||| | | |||| ||| |||||||||| ||| ||||||||| ||||| || ||||||||| |
|
|
| T |
14339499 |
tcttcctgagatgcttccaaagaagcttataccattaggatactcaacagctgccgttgttgcatatccagctccagtatctgaattggagtcaccaaag |
14339400 |
T |
|
| Q |
109 |
ttataaattgcagggtacacacattt |
134 |
Q |
| |
|
|| || ||||| ||||| |||||||| |
|
|
| T |
14339399 |
ttgtatattgctgggtagacacattt |
14339374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 2494 times since January 2019
Visitors: 2401