View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF0200_1D_low_31 (Length: 204)
Name: NF0200_1D_low_31
Description: NF0200_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0200_1D_low_31 |
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Alignment Details
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 200
Target Start/End: Original strand, 19840933 - 19841132
Alignment:
| Q |
1 |
tcagcataaattggtattagacattacagatcaaaagaatggagattcatctcataagaaaaataagcttcagagctcaatcaacagaaaaattcattag |
100 |
Q |
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| T |
19840933 |
tcagcataaattggtattagacattacagatcaaaagaatggagattcatctcataagaaaaataagcttcagagctcaatcaacagaaaaattcattag |
19841032 |
T |
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| Q |
101 |
ggttcatgttcgattaacagataaaagataggcaactgtgtacataattgtcataattatagacaatagcaccaactaattgtgtagccaacaccaaact |
200 |
Q |
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| T |
19841033 |
ggttcatgttcgattaacagataaaagataggcaactgtgtacataattgtcataattatagacaatagcaccgactaattgtgtagccaactccaaact |
19841132 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 2e-35
Query Start/End: Original strand, 8 - 131
Target Start/End: Original strand, 19958876 - 19958999
Alignment:
| Q |
8 |
aaattggtattagacattacagatcaaaagaatggagattcatctcataagaaaaataagcttcagagctcaatcaacagaaaaattcattagggttcat |
107 |
Q |
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|||||||||||||| || |||||| ||| ||||| ||||||||||||||||||||||||||||||||||||||| | ||||||||||||||| |||||| |
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| T |
19958876 |
aaattggtattagaaatcacagatgaaaggaatgaagattcatctcataagaaaaataagcttcagagctcaattgagagaaaaattcattagagttcat |
19958975 |
T |
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| Q |
108 |
gttcgattaacagataaaagatag |
131 |
Q |
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| T |
19958976 |
gtttgattaattgataaaagatag |
19958999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 15 - 144
Target Start/End: Complemental strand, 20030928 - 20030800
Alignment:
| Q |
15 |
tattagacattacagatcaaaagaatggagattcatctcataagaaaaataagcttcagagctcaatcaacagaaaaattcattagggttcatgttcgat |
114 |
Q |
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| T |
20030928 |
tattagaaatcacagatgaaaggaatgaagattcatcgcataagaaaaataagcttca-agctcaatcgagagaaaaattcattagagttcatgtttgat |
20030830 |
T |
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| Q |
115 |
taacagataaaagataggcaactgtgtaca |
144 |
Q |
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| T |
20030829 |
taattgataaaagatagtcaattgtgtaca |
20030800 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 40; E-Value: 0.00000000000007
Query Start/End: Original strand, 2 - 92
Target Start/End: Original strand, 19851461 - 19851552
Alignment:
| Q |
2 |
cagcataaattggtattagacattaca-gatcaaaagaatggagattcatctcataagaaaaataagcttcagagctcaatcaacagaaaaa |
92 |
Q |
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||||| |||||||||||| | || ||| ||||||| | ||| |||||||||||| ||||||| ||||||| ||||||||||||| ||||||| |
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| T |
19851461 |
cagcacaaattggtattacaaatcacatgatcaaagggatgaagattcatctcagaagaaaagtaagctttagagctcaatcaagagaaaaa |
19851552 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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