View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0200_1D_low_4 (Length: 655)
Name: NF0200_1D_low_4
Description: NF0200_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0200_1D_low_4 |
 | |
|
| [»] chr5 (3 HSPs) |
| |
|
Alignment Details
Target: chr5 (Bit Score: 636; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 636; E-Value: 0
Query Start/End: Original strand, 12 - 655
Target Start/End: Original strand, 38814467 - 38815110
Alignment:
| Q |
12 |
atcatcactaactcaacatgctaagtagtaacggtattaaactaaatgaacatatacagatcatacaagaatccatttcagtgattgaaaactagttaaa |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38814467 |
atcatcactaactcaacatgctaagtagtaacggtattaaactaaatgaacatatacagatcatacaagaatgcatttcagtgattgaaaactagttaaa |
38814566 |
T |
|
| Q |
112 |
agttgatgaaaataggagcatacacttcttcaggctctcgaacatcaatcaactgtgcctcctccaagaaattgggatcttgaaatttcacatgcagctc |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38814567 |
agttgatgaaaataggagcatacacttcttcaggctctcgaacatcaatcaactgtgcctcctccaagaaattgggatcttgaaatttcacatgcagctc |
38814666 |
T |
|
| Q |
212 |
atcaggttgaatgtctagaagtactggttcttccctgacaattaatggagtaaatttacaaggcatgagaaactcattaaaacaaacaactactatcatc |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38814667 |
atcaggttgaatgtctagaagtactggttcttccctgacaattaatggagtaaatttacaaggcatgagaaactcattaaaacaaacaactactatcatc |
38814766 |
T |
|
| Q |
312 |
ccataaggtgatgttggctaattggatcaaacaatcaattagggttaataaatagccaaatattcaatgaatttcacattggaactaaacacatcttatc |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38814767 |
ccataaggtgatgttggctaattggatcaaacaatcaattagggttaataaatagccaaatattcaatgaatttcacattggaactaaacacatcttatc |
38814866 |
T |
|
| Q |
412 |
attcaacttaaaaagcatatgcctggaaatacctctcagataaaacttgcagcaagtgccatccaaattgggtcttgcaccttacaattttgtttaaagg |
511 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38814867 |
atccaacttaaaaagcatatgcctggaaatacctctcagataaaacttgcagcaagtgccatccaaattgggtcttgcaccttacaattttgtttaaagg |
38814966 |
T |
|
| Q |
512 |
tgcactaaacgcagcctcctcaaattcaggaacctgtcgcattttcataattagagatatgttcaatcacataactgtactattgcagttcatagaattt |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38814967 |
tgcactaaacgcagcctcctcaaattcaggaacctgtcgcattttcataattagagatatgttcaatcacataactgtactattgcagttcatagaattt |
38815066 |
T |
|
| Q |
612 |
gggttggtctaattcaacactacaaaatcaacttgacttgtaag |
655 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38815067 |
gggttggtctaattcaacactacaaaatcaacttgacttgtaag |
38815110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 109; E-Value: 2e-54
Query Start/End: Original strand, 316 - 596
Target Start/End: Original strand, 38821252 - 38821537
Alignment:
| Q |
316 |
aaggtgatgttggctaattggatcaaacaatcaattagggttaat--aaatagccaaatattcaatgaatttcacattggaactaaacacatcttatcat |
413 |
Q |
| |
|
|||||| |||||||||||| ||||||||||||||| ||| || | ||||| ||||||||||||| |||||| ||| ||| |||||||| ||| ||| |
|
|
| T |
38821252 |
aaggtggtgttggctaattagatcaaacaatcaataaggatttacgaaaataaccaaatattcaataaatttcccatccgaaagaaacacattttaccat |
38821351 |
T |
|
| Q |
414 |
tcaactta---aaaagcatatgcctggaaatacctctcagataaaacttgcagcaagtgccatccaaattgggtcttgcaccttacaattttgtttaaag |
510 |
Q |
| |
|
|||||| |||| ||||| || ||||||||| ||||||||||| ||||||| |||||||||||||| ||||||||| |||||| ||||||||||| |
|
|
| T |
38821352 |
ccaacttggagaaaaaaatatgtcttgaaatacctttcagataaaacctgcagcaggtgccatccaaattttgtcttgcacattacaactttgtttaaag |
38821451 |
T |
|
| Q |
511 |
gtgcactaaacgcagcctcctcaaattcaggaacctgtcgcattttcataattagagatatgttcaatcacataactgtactattg |
596 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| |||||| ||| | | |||||||| ||||||||||| |||||||||| |
|
|
| T |
38821452 |
gtgcactaaacacagcctcctcaaattcaggaacctgatgcatttacatcaacaaagatatgtccaatcacataattgtactattg |
38821537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 119 - 247
Target Start/End: Original strand, 38821032 - 38821160
Alignment:
| Q |
119 |
gaaaataggagcatacacttcttcaggctctcgaacatcaatcaactgtgcctcctccaagaaattgggatcttgaaatttcacatgcagctcatcaggt |
218 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | |||| ||||||||||||| |||||||||||||||||||||| |
|
|
| T |
38821032 |
gaaaataggagcatacacttcttcaggctctcgaacatcaattaactgtgcctccttcgagaagttgggatcttgaagtttcacatgcagctcatcaggt |
38821131 |
T |
|
| Q |
219 |
tgaatgtctagaagtactggttcttccct |
247 |
Q |
| |
|
||||||||| ||| ||| | ||||||||| |
|
|
| T |
38821132 |
tgaatgtcttgaaatacagattcttccct |
38821160 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1382 times since January 2019
Visitors: 2391