View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0200_1D_low_5 (Length: 618)
Name: NF0200_1D_low_5
Description: NF0200_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0200_1D_low_5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 186; Significance: 1e-100; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 278 - 606
Target Start/End: Original strand, 12171101 - 12171428
Alignment:
| Q |
278 |
tccagctcagtctaagtgaatcttgttacttttcttagttcaaagttaaaaatttctctgaaaa--gagtgtata-taaattaatattgtcatgtgattg |
374 |
Q |
| |
|
|||||||||| |||||||||||| | |||||||||| |||||||||||||||||| |||||||| ||||||||| ||| |||| || || |||| ||| |
|
|
| T |
12171101 |
tccagctcaggctaagtgaatct-gctacttttcttggttcaaagttaaaaatttgtctgaaaattgagtgtataataacttaaaat-gtaatgt-att- |
12171196 |
T |
|
| Q |
375 |
tgtggagactgtattcttctcattttctttgtcggaaatgcagaatgcctatggaacactgcatggaggcgcggttggttccttggttgaagttctgtca |
474 |
Q |
| |
|
||||||||| | | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||| |
|
|
| T |
12171197 |
--tggagactggaattttctcattttctttgtcggaattgcagaatgcctatggaacactgcatggaggcgctgttgggtccttagttgaagttctgtca |
12171294 |
T |
|
| Q |
475 |
actgcttgtgctggaactgtagttaccgaggacaaggaacattttcttggggaaattagcatttcttac--ctctggcactccaataaatgtgagttctt |
572 |
Q |
| |
|
|||||||||||| ||||||||||| | ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12171295 |
actgcttgtgctagaactgtagttgctgaggacaaggaactttttcttggggaaattagcatttcttacctctctggcactccaataaatgtgagttctt |
12171394 |
T |
|
| Q |
573 |
gttttcactggtgattctttcctatgatgtccat |
606 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
12171395 |
attttcactggtgattatttcctatgatgtccat |
12171428 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 278 - 606
Target Start/End: Original strand, 12415529 - 12415856
Alignment:
| Q |
278 |
tccagctcagtctaagtgaatcttgttacttttcttagttcaaagttaaaaatttctctgaaaa--gagtgtata-taaattaatattgtcatgtgattg |
374 |
Q |
| |
|
|||||||||| |||||||||||| | |||||||||| |||||||||||||||||| |||||||| ||||||||| ||| |||| || || |||| ||| |
|
|
| T |
12415529 |
tccagctcaggctaagtgaatct-gctacttttcttggttcaaagttaaaaatttgtctgaaaattgagtgtataataacttaaaat-gtaatgt-att- |
12415624 |
T |
|
| Q |
375 |
tgtggagactgtattcttctcattttctttgtcggaaatgcagaatgcctatggaacactgcatggaggcgcggttggttccttggttgaagttctgtca |
474 |
Q |
| |
|
||||||||| | | ||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| ||||| ||||||||||||||| |
|
|
| T |
12415625 |
--tggagactggaattttctcattttctttgtcggaattgcagaatgcctatggaacactgcatggaggcgctgttgggtccttagttgaagttctgtca |
12415722 |
T |
|
| Q |
475 |
actgcttgtgctggaactgtagttaccgaggacaaggaacattttcttggggaaattagcatttcttac--ctctggcactccaataaatgtgagttctt |
572 |
Q |
| |
|
|||||||||||| ||||||||||| | ||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
12415723 |
actgcttgtgctagaactgtagttgctgaggacaaggaactttttcttggggaaattagcatttcttacctctctggcactccaataaatgtgagttctt |
12415822 |
T |
|
| Q |
573 |
gttttcactggtgattctttcctatgatgtccat |
606 |
Q |
| |
|
||||||||||||||| ||||||||||||||||| |
|
|
| T |
12415823 |
attttcactggtgattatttcctatgatgtccat |
12415856 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University
This website was viewed 1135 times since January 2019
Visitors: 2389