View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0200_1D_low_8 (Length: 418)

Name: NF0200_1D_low_8
Description: NF0200_1D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0200_1D_low_8
NF0200_1D_low_8
[»] chr5 (2 HSPs)
chr5 (19-360)||(38815437-38815781)
chr5 (356-418)||(38815928-38815990)
[»] chr7 (2 HSPs)
chr7 (224-321)||(39079876-39079973)
chr7 (272-329)||(21048692-21048749)
[»] chr1 (1 HSPs)
chr1 (224-321)||(19810946-19811043)
[»] chr8 (1 HSPs)
chr8 (224-278)||(25971173-25971227)
[»] chr6 (2 HSPs)
chr6 (273-319)||(2115530-2115576)
chr6 (226-279)||(18286713-18286766)
[»] chr2 (2 HSPs)
chr2 (257-303)||(33455859-33455905)
chr2 (267-312)||(7252252-7252297)
[»] chr3 (1 HSPs)
chr3 (267-312)||(1348868-1348913)
[»] scaffold1034 (1 HSPs)
scaffold1034 (246-321)||(819-895)


Alignment Details
Target: chr5 (Bit Score: 318; Significance: 1e-179; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 318; E-Value: 1e-179
Query Start/End: Original strand, 19 - 360
Target Start/End: Original strand, 38815437 - 38815781
Alignment:
Q  19 caccacacaa-gaggcccttcacggctatttagatctctaggctgtgtaggactaacccagcctctcacacccagcaaaattaaggtgctcgaagctgca 117  Q
    |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38815437 caccacacaaagaggcccttcacggctatttagatctctaggctgtgtaggactaacccagcctctcacacccagcaaaattaaggtgctcgaagctgca 38815536  T
Q  118 atgaaggaaatttaaaagccaaatttaagatggctaggggcagaccacaatcaaggcaaaatttccaacac--tgcctcacaacctggcataaattgggc 215  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||  ||||||||||||||||||||||||| |    
T  38815537 atgaaggaaatttaaaagccaaatttaagatggctaggggaagaccacaatcaaggcaaaatttccaacaccctgcctcacaacctggcataaattggac 38815636  T
Q  216 taggggcatggacaatgcgggcagtccaacaacagatctaggatagactccgatatcatcttagagtttgggttgagtctaattcaaccctacaaaatcg 315  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38815637 taggggcatggacaatgcgggcagtccaacaacagatctaggatagactccgatatcatcttagagtttgggttgagtctaattcaaccctacaaaatcg 38815736  T
Q  316 gcttgtcaggtgcgcactgtccaaacttacaagcactactactta 360  Q
    |||||||||||||||||||||||||||||||||||||||||||||    
T  38815737 gcttgtcaggtgcgcactgtccaaacttacaagcactactactta 38815781  T

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Target: chr5; HSP #2
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 356 - 418
Target Start/End: Original strand, 38815928 - 38815990
Alignment:
Q  356 acttaggccatgtctcttggtcatgcgggactaaacccgacctctcaagtccaacacaatgaa 418  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38815928 acttaggccatgtctcttggtcatgcgggactaaacccgacctctcaagtccaacacaatgaa 38815990  T

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Target: chr7 (Bit Score: 34; Significance: 0.0000000006; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 321
Target Start/End: Original strand, 39079876 - 39079973
Alignment:
Q  224 tggacaatgcgggcagtccaacaacagatctaggatagactccgatatcatcttagagtttgggttgagtctaattcaaccctacaaaatcggcttgt 321  Q
    |||||||||| || || ||||| ||||||||||||||| ||| |||  ||||||| | ||||||||| | |||| | |||| ||||||| ||||||||    
T  39079876 tggacaatgcaggaagcccaacgacagatctaggataggctctgatgccatcttaaaatttgggttgggcctaactaaaccttacaaaaccggcttgt 39079973  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 272 - 329
Target Start/End: Original strand, 21048692 - 21048749
Alignment:
Q  272 catcttagagtttgggttgagtctaattcaaccctacaaaatcggcttgtcaggtgcg 329  Q
    ||||||||| ||||||||||| |||| |||||| || ||||| ||||||| |||||||    
T  21048692 catcttagaatttgggttgagcctaactcaaccttataaaattggcttgtaaggtgcg 21048749  T

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Target: chr1 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 224 - 321
Target Start/End: Original strand, 19810946 - 19811043
Alignment:
Q  224 tggacaatgcgggcagtccaacaacagatctaggatagactccgatatcatcttagagtttgggttgagtctaattcaaccctacaaaatcggcttgt 321  Q
    ||||| ||||||| || ||  ||||||||||||||||| ||| |||| ||||||| | ||||||||  | |||| |||||| ||||||| ||||||||    
T  19810946 tggacgatgcgggaagccctgcaacagatctaggatagtctctgataccatcttaaaatttgggttcggcctaagtcaaccttacaaaaccggcttgt 19811043  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 224 - 278
Target Start/End: Complemental strand, 25971227 - 25971173
Alignment:
Q  224 tggacaatgcgggcagtccaacaacagatctaggatagactccgatatcatctta 278  Q
    ||||| ||||||| |||||||||||||||||||||||| ||| |||  |||||||    
T  25971227 tggacgatgcgggaagtccaacaacagatctaggataggctctgattccatctta 25971173  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 273 - 319
Target Start/End: Complemental strand, 2115576 - 2115530
Alignment:
Q  273 atcttagagtttgggttgagtctaattcaaccctacaaaatcggctt 319  Q
    |||||| | |||||||||||||||||| |||||||||||| ||||||    
T  2115576 atcttaaaatttgggttgagtctaattgaaccctacaaaaccggctt 2115530  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 226 - 279
Target Start/End: Complemental strand, 18286766 - 18286713
Alignment:
Q  226 gacaatgcgggcagtccaacaacagatctaggatagactccgatatcatcttag 279  Q
    ||||||||||| || || |||||||||||| ||||| ||| |||||||||||||    
T  18286766 gacaatgcgggaagcccgacaacagatctacgataggctctgatatcatcttag 18286713  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 303
Target Start/End: Complemental strand, 33455905 - 33455859
Alignment:
Q  257 gatagactccgatatcatcttagagtttgggttgagtctaattcaac 303  Q
    ||||||||| |||| ||||||||| |||||||||||||||| |||||    
T  33455905 gatagactctgataccatcttagaatttgggttgagtctaactcaac 33455859  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 312
Target Start/End: Complemental strand, 7252297 - 7252252
Alignment:
Q  267 gatatcatcttagagtttgggttgagtctaattcaaccctacaaaa 312  Q
    |||| ||||||||| ||||||||||| |||| ||||||||||||||    
T  7252297 gataccatcttagaatttgggttgagcctaactcaaccctacaaaa 7252252  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 267 - 312
Target Start/End: Original strand, 1348868 - 1348913
Alignment:
Q  267 gatatcatcttagagtttgggttgagtctaattcaaccctacaaaa 312  Q
    |||||||||||| | |||||||||||||||| |||||| |||||||    
T  1348868 gatatcatcttaaaatttgggttgagtctaactcaaccatacaaaa 1348913  T

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Target: scaffold1034 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1034
Description:

Target: scaffold1034; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 246 - 321
Target Start/End: Complemental strand, 895 - 819
Alignment:
Q  246 aacagatctaggatagactccgatatcatcttagagtttgggttgagtctaattcaaccc-tacaaaatcggcttgt 321  Q
    |||||||||  | ||||||| |||||||||||||| |||| |||  | |||||||||||| ||||||||| ||||||    
T  895 aacagatcttagttagactctgatatcatcttagaatttgagttaggcctaattcaacccttacaaaatcagcttgt 819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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