View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF0200_2D_low_1 (Length: 612)

Name: NF0200_2D_low_1
Description: NF0200_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF0200_2D_low_1
NF0200_2D_low_1
[»] chr1 (12 HSPs)
chr1 (152-595)||(17653203-17653634)
chr1 (160-567)||(47050352-47050747)
chr1 (160-486)||(14660026-14660344)
chr1 (160-474)||(16100706-16101013)
chr1 (160-486)||(14650235-14650553)
chr1 (160-472)||(29288999-29289312)
chr1 (394-562)||(17478575-17478739)
chr1 (160-354)||(19657461-19657649)
chr1 (394-595)||(263007-263204)
chr1 (426-492)||(17981719-17981786)
chr1 (425-474)||(19657319-19657369)
chr1 (427-474)||(16104423-16104471)
[»] chr6 (18 HSPs)
chr6 (152-595)||(22013924-22014354)
chr6 (160-567)||(25478096-25478491)
chr6 (162-501)||(28040664-28040996)
chr6 (160-486)||(27527203-27527531)
chr6 (160-474)||(33055601-33055905)
chr6 (271-496)||(27684088-27684314)
chr6 (271-496)||(27691407-27691633)
chr6 (293-474)||(33063205-33063384)
chr6 (160-501)||(27650961-27651295)
chr6 (161-551)||(15970279-15970657)
chr6 (331-496)||(17357635-17357801)
chr6 (277-486)||(6952290-6952498)
chr6 (160-266)||(33062984-33063090)
chr6 (400-486)||(9815053-9815140)
chr6 (396-501)||(16694059-16694165)
chr6 (163-336)||(17355375-17355540)
chr6 (418-496)||(13141996-13142075)
chr6 (400-474)||(30130534-30130609)
[»] chr2 (12 HSPs)
chr2 (152-595)||(44324032-44324462)
chr2 (213-501)||(45332676-45332956)
chr2 (163-496)||(31713836-31714161)
chr2 (271-496)||(39154633-39154860)
chr2 (314-501)||(808579-808765)
chr2 (161-242)||(2588117-2588198)
chr2 (394-486)||(4406347-4406440)
chr2 (152-251)||(808810-808909)
chr2 (401-486)||(9311064-9311150)
chr2 (160-217)||(45331962-45332019)
chr2 (418-474)||(10416155-10416212)
chr2 (400-474)||(4698095-4698170)
[»] chr3 (10 HSPs)
chr3 (160-567)||(19434968-19435363)
chr3 (152-486)||(28103769-28104096)
chr3 (152-486)||(28068794-28069116)
chr3 (152-486)||(28058369-28058691)
chr3 (160-485)||(6911242-6911564)
chr3 (199-342)||(11200699-11200834)
chr3 (400-491)||(17954693-17954784)
chr3 (428-489)||(23397923-23397984)
chr3 (427-501)||(9436001-9436076)
chr3 (418-474)||(5705490-5705547)
[»] chr5 (6 HSPs)
chr5 (152-501)||(5519373-5519712)
chr5 (162-501)||(42785455-42785783)
chr5 (400-501)||(15599016-15599117)
chr5 (160-339)||(15598659-15598829)
chr5 (277-334)||(27198374-27198431)
chr5 (394-484)||(27198198-27198289)
[»] chr4 (15 HSPs)
chr4 (213-567)||(27560975-27561317)
chr4 (160-486)||(4763405-4763727)
chr4 (278-501)||(11512701-11512925)
chr4 (411-501)||(51533841-51533930)
chr4 (411-501)||(18694128-18694217)
chr4 (400-485)||(27733593-27733678)
chr4 (391-491)||(5358535-5358635)
chr4 (394-496)||(54351775-54351876)
chr4 (152-217)||(27561332-27561397)
chr4 (303-374)||(8164473-8164542)
chr4 (279-335)||(5358666-5358722)
chr4 (160-252)||(11512948-11513039)
chr4 (162-252)||(5358734-5358824)
chr4 (61-107)||(40383358-40383404)
chr4 (213-329)||(54351969-54352078)
[»] chr8 (7 HSPs)
chr8 (160-501)||(18982382-18982714)
chr8 (162-501)||(4706552-4706877)
chr8 (278-491)||(28603022-28603234)
chr8 (164-501)||(26917241-26917567)
chr8 (277-490)||(26340387-26340602)
chr8 (300-486)||(15925033-15925219)
chr8 (152-242)||(15924891-15924982)
[»] scaffold0406 (1 HSPs)
scaffold0406 (160-567)||(3615-4007)
[»] scaffold0007 (1 HSPs)
scaffold0007 (160-595)||(60505-60929)
[»] scaffold0438 (2 HSPs)
scaffold0438 (162-490)||(7563-7884)
scaffold0438 (277-490)||(10548-10763)
[»] scaffold0713 (1 HSPs)
scaffold0713 (271-486)||(780-995)
[»] scaffold0002 (3 HSPs)
scaffold0002 (394-502)||(412872-412980)
scaffold0002 (427-502)||(406869-406944)
scaffold0002 (394-491)||(424255-424352)
[»] chr7 (7 HSPs)
chr7 (394-491)||(36264128-36264224)
chr7 (300-486)||(28803653-28803838)
chr7 (278-354)||(36264288-36264365)
chr7 (412-486)||(44060056-44060131)
chr7 (152-251)||(28803513-28803613)
chr7 (420-492)||(29466909-29466983)
chr7 (292-372)||(29467028-29467106)
[»] scaffold0012 (2 HSPs)
scaffold0012 (512-595)||(233396-233479)
scaffold0012 (420-497)||(182811-182889)
[»] scaffold0036 (1 HSPs)
scaffold0036 (394-483)||(31705-31792)


Alignment Details
Target: chr1 (Bit Score: 232; Significance: 1e-128; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 152 - 595
Target Start/End: Complemental strand, 17653634 - 17653203
Alignment:
Q  152 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 251  Q
    ||||||| || |||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  17653634 ttaagtccgacttttatattctatttggatttgattatctcgattccttttcattataatcgatttctatattttctttaaagttgtggatttgatttca 17653535  T
Q  252 cctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaa 351  Q
    ||||||||| |||||        |||||| |||||   | |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||     
T  17653534 cctcttgacgacatt--------gaaattctgatag--tcttatttggtttgataaatttacaaagttttatgaattttcatggtacacttgattgtgag 17653445  T
Q  352 tttattatatttttatatggttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtgg 451  Q
     |||||||||||||||| ||||||||||||  ||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||    
T  17653444 gttattatatttttatacggttactagccttgtaaattaaaaattagatttgagaagaataaataatcgtgcccttgtgtgtttcccttctagttggtgg 17653345  T
Q  452 tagttgttgtctctcactaagtccttgtaacttactctttctttttctatannnnnnnnccagattttcaagcagttgggtagaaagctgctagtagact 551  Q
    | |||||||||||||||||||||||||  ||||||||||||| |||||||         |||||||||||||||| || |||||||||||||||||||||    
T  17653344 tggttgttgtctctcactaagtccttgcgacttactctttctctttctat--tttttttccagattttcaagcagctgagtagaaagctgctagtagact 17653247  T
Q  552 cgaagctcagcagtgtgacattttattggcaggcctccttgatg 595  Q
    ||||||||||| | || ||||||| |||| ||||||||||||||    
T  17653246 cgaagctcagcggcgtcacattttgttggtaggcctccttgatg 17653203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 223; E-Value: 1e-122
Query Start/End: Original strand, 160 - 567
Target Start/End: Complemental strand, 47050747 - 47050352
Alignment:
Q  160 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 259  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  47050747 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 47050648  T
Q  260 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattat 359  Q
    | |||||        |||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  47050647 cgacatt--------gaaattttgatatagtcttatttggtttgataaaattacaaagttttatgaattttcatggtacacttgattgtgaatttattat 47050556  T
Q  360 atttttatatggttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgtt 459  Q
    |||||||||  |||||||||||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| ||||||    
T  47050555 atttttatacagttactagccttgtaagttaaaaattagatttgagaaaaataaataatcgtgcccttgtgtgtttcccttctagttggtggtggttgtt 47050456  T
Q  460 gtctctcactaagtccttgtaacttactctttctttttctatannnnnnnnccagattttcaagcagttgggtagaaagctgctagtagactcgaagctc 559  Q
    |||||||||||||||||||| |||||||||||  ||||||||          ||||||||||||||| |  |||| ||||||||||||||||| ||| ||    
T  47050455 gtctctcactaagtccttgtgacttactcttttattttctat----ttttttcagattttcaagcagctaagtaggaagctgctagtagactcaaagttc 47050360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 160 - 486
Target Start/End: Original strand, 14660026 - 14660344
Alignment:
Q  160 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 259  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||| ||||||    
T  14660026 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacttcttga 14660125  T
Q  260 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattat 359  Q
    | |||||        |||||||||||||| | ||||||||||||||||| ||| |||||||||||||||||||||||| |||||||| ||||||||||||    
T  14660126 cgacatt--------gaaattttgatatagtcttatttggtttgataaaattagaaagttttatgaattttcatggtacacttgattgtgaatttattat 14660217  T
Q  360 atttttatatggttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgtt 459  Q
    |||||||||  |||||||||||  ||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||    
T  14660218 atttttatacagttactagccttgtaagttaaaaattagatttga-aaaaaaaaataatcgtgcccttgtgtgtttcccttctagttggtggtggttgtt 14660316  T
Q  460 gtct-ctcactaagtccttgtaacttac 486  Q
    |||| ||||||||||| |||| ||||||    
T  14660317 gtctcctcactaagtctttgtgacttac 14660344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 160 - 474
Target Start/End: Original strand, 16100706 - 16101013
Alignment:
Q  160 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 259  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  16100706 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 16100805  T
Q  260 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattat 359  Q
    | |||||        |||||||||||||| | ||||||||||||||||| ||||||||||||||||||| |||||||| |||||||| ||||||||||||    
T  16100806 cgacatt--------gaaattttgatatagtcttatttggtttgataaaattacaaagttttatgaattctcatggtacacttgattgtgaatttattat 16100897  T
Q  360 atttttatatggttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgtt 459  Q
    |||||||||  |||||||||||  | ||||||||||||||||||||||||||||||| ||||| || |||||||||||||| |||||||||||  |||||    
T  16100898 atttttatacagttactagccttgttagttaaaaattagatttgagaaaaataaataatcgtgaccatgtgtgtttcccttctagttggtggtgattgtt 16100997  T
Q  460 gtct-ctcactaagtc 474  Q
    |||| |||||||||||    
T  16100998 gtctcctcactaagtc 16101013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 175; E-Value: 6e-94
Query Start/End: Original strand, 160 - 486
Target Start/End: Original strand, 14650235 - 14650553
Alignment:
Q  160 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 259  Q
    ||||||||||||| ||||| |||| |  |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||| ||||||    
T  14650235 gatttttatattctatttggatttgactatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacttcttga 14650334  T
Q  260 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattat 359  Q
    | |||||        |||||||||||||| | ||||||||||||||||| ||| ||||||||||||||| |||||||| |||||||| ||||||||||||    
T  14650335 cgacatt--------gaaattttgatatagtcttatttggtttgataaaattaaaaagttttatgaattatcatggtacacttgattgtgaatttattat 14650426  T
Q  360 atttttatatggttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgtt 459  Q
    |||||||||  |||||||||||  ||||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||||| ||||||    
T  14650427 atttttatacagttactagccttgtaagttaaaaattagatttga-aaaaaaaaataatcgtgcccttgtgtgtttcccttctagttggtggtggttgtt 14650525  T
Q  460 gtct-ctcactaagtccttgtaacttac 486  Q
    |||| ||||||||||| |||| ||||||    
T  14650526 gtctcctcactaagtctttgtgacttac 14650553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 160 - 472
Target Start/End: Complemental strand, 29289312 - 29288999
Alignment:
Q  160 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 259  Q
    |||| |||||||| ||||| |||| || ||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| ||||||||||||||||    
T  29289312 gattgttatattctatttggatttgattatctcgattccttttcattataatcaatttatatattttctttaaagttgtggatttggtttcacctcttga 29289213  T
Q  260 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattat 359  Q
    | |||||        ||||||||| |||| | ||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  29289212 cgacatt--------gaaattttgttatagtcttatttggtttgataaaattacaaagttttatgaattttcatggtacacttgattgtgaatttattat 29289121  T
Q  360 atttttatatggttactagc---------ctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtg 450  Q
    ||||||||| ||||||||||         ||  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||    
T  29289120 atttttatacggttactagccttgtaagtcttgtaagttaaaaattagatttgagaaaaataaataatcgtgcccttgtgtgtttcccttctagttggtg 29289021  T
Q  451 gtagttgttgtctctcactaag 472  Q
    || |||||||||||||||||||    
T  29289020 gtggttgttgtctctcactaag 29288999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 394 - 562
Target Start/End: Complemental strand, 17478739 - 17478575
Alignment:
Q  394 attagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctttct 493  Q
    |||||||||||||||  |||||| ||||||||||||| ||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||| ||     
T  17478739 attagatttgagaaag-taaataatcgtgcccttgtgcgtttcccttctagttggtggtggttgttgtctctcactaagtccttgtgacttactctctca 17478641  T
Q  494 ttttctatannnnnnnnccagattttcaagcagttgggtagaaagctgctagtagactcgaagctcagc 562  Q
    ||||||||         |||||||||||||||| |  || || |||||||||||||||| ||| |||||    
T  17478640 ttttctat---ttttttccagattttcaagcagctaagtggagagctgctagtagactcaaagttcagc 17478575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 160 - 354
Target Start/End: Complemental strand, 19657649 - 19657461
Alignment:
Q  160 gatttttatattcaatttgaattta-atcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttg 258  Q
    ||||||||||||| ||||| ||||  || || || |||||||||||||||    |||||||||||| ||||||| |||| |||| ||| || |||||||     
T  19657649 gatttttatattctatttggatttctattatttcaattccttttcattatgtgtgatttctatattttctttaaggttgcggatttgggttgacctcttt 19657550  T
Q  259 acaacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatg-gtatacttgattatgaattt 354  Q
    ||||||||  |        |||| |||||||| |||||||||||||||||||||||||||||| ||||||||||||  || |||||||| |||||||    
T  19657549 acaacattggg--------atttcgatataatcttatttggtttgataaatttacaaagttttttgaattttcatgtatacacttgattgtgaattt 19657461  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 394 - 595
Target Start/End: Original strand, 263007 - 263204
Alignment:
Q  394 attagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaacttactctttc 492  Q
    |||||||| ||||||  ||| || |||||||| | | |||||||||| |||| |||||| |||||||||| ||||||||||||||||  |||||||||||    
T  263007 attagattcgagaaacttaattactcgtgcccatatatgtttcccttctagtcggtggtggttgttgtctcctcactaagtccttgtggcttactctttc 263106  T
Q  493 tttttctatannnnnnnnccagattttcaagcagttgggtagaaagctgctagtagactcgaagctcagcagtgtgacattttattggcaggcctccttg 592  Q
     ||||||||          ||||||  ||  ||| || |||||||||||||||||||||| | | |||||||||| ||||||| |||| ||||| |||||    
T  263107 gttttctat----ttttttcagattcccacacagctgagtagaaagctgctagtagactcaaggttcagcagtgtcacatttt-ttggtaggccaccttg 263201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 426 - 492
Target Start/End: Complemental strand, 17981786 - 17981719
Alignment:
Q  426 ttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaacttactctttc 492  Q
    ||||||||||||||| |||||||||||  ||||||||| |||| |||||| |||| ||||||||||||    
T  17981786 ttgtgtgtttcccttctagttggtggtgattgttgtctcctcaataagtctttgtgacttactctttc 17981719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 425 - 474
Target Start/End: Complemental strand, 19657369 - 19657319
Alignment:
Q  425 cttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtc 474  Q
    |||||||||||||||| |||||||||||  ||||||||| |||||||||||    
T  19657369 cttgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtc 19657319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 427 - 474
Target Start/End: Original strand, 16104423 - 16104471
Alignment:
Q  427 tgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtc 474  Q
    |||||||||||||| |||||||||||  ||||||||| |||||||||||    
T  16104423 tgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtc 16104471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 224; Significance: 1e-123; HSPs: 18)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 152 - 595
Target Start/End: Original strand, 22013924 - 22014354
Alignment:
Q  152 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 251  Q
    ||||||| || |||||||||| ||||| |||| || ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  22013924 ttaagtccgacttttatattctatttggatttgattatctcgatttcttttcattataatcgatttctatattttctttaaagttgtggatttgatttca 22014023  T
Q  252 cctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaa 351  Q
    ||||||||| |||||        |||||| |||||   | |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||     
T  22014024 cctcttgacgacatt--------gaaattctgatag--tcttatttggtttgataaatttacaaagttttatgaattttcatggtacacttgattgtgag 22014113  T
Q  352 tttattatatttttatatggttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtgg 451  Q
    ||||||||||||||||| ||||||||| ||  ||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||    
T  22014114 tttattatatttttatacggttactagtcttgtaaattaaaaattagatttgagaagaataaataatcgtgcccttgtgtgtttcccttctagttggtgg 22014213  T
Q  452 tagttgttgtctctcactaagtccttgtaacttactctttctttttctatannnnnnnnccagattttcaagcagttgggtagaaagctgctagtagact 551  Q
    | |||||||||||||||||||||||||  ||||||||||||| |||||||         |||||||||||||||| || |||||||||||||||||||||    
T  22014214 tggttgttgtctctcactaagtccttgcgacttactctttctctttctat---ttttttccagattttcaagcagctgagtagaaagctgctagtagact 22014310  T
Q  552 cgaagctcagcagtgtgacattttattggcaggcctccttgatg 595  Q
    ||||||||| | | || ||||||| |||| ||||||||||||||    
T  22014311 cgaagctcaacggcgtcacattttgttggtaggcctccttgatg 22014354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 203; E-Value: 1e-110
Query Start/End: Original strand, 160 - 567
Target Start/End: Complemental strand, 25478491 - 25478096
Alignment:
Q  160 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 259  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  25478491 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 25478392  T
Q  260 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattat 359  Q
    | |||||        |||||||||||||| | ||||||||||||||||| |||| ||||||||||||||||||||||| |||||||| ||||||||||||    
T  25478391 cgacatt--------gaaattttgatatagtcttatttggtttgataaaattacgaagttttatgaattttcatggtacacttgattgtgaatttattat 25478300  T
Q  360 atttttatatggttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgtt 459  Q
    |||||||||  |||||||||||  |||||||||||||| ||||||||||| |||| | ||||||||||||||||||||||| |||||||| || ||||||    
T  25478299 atttttatacagttactagccttgtaagttaaaaattatatttgagaaaagtaaaaaatcgtgcccttgtgtgtttcccttctagttggtagtggttgtt 25478200  T
Q  460 gtctctcactaagtccttgtaacttactctttctttttctatannnnnnnnccagattttcaagcagttgggtagaaagctgctagtagactcgaagctc 559  Q
    |||||||||||||||||||| |||||||||||  ||||||||          ||||||||||||||| |  |||| ||||||||||||||||| ||| ||    
T  25478199 gtctctcactaagtccttgtgacttactcttttattttctat----ttttttcagattttcaagcagctacgtaggaagctgctagtagactcaaagttc 25478104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 162 - 501
Target Start/End: Original strand, 28040664 - 28040996
Alignment:
Q  162 tttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgaca 261  Q
    ||||||||||  ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||||||||||||||     
T  28040664 tttttatattatatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttgacg 28040763  T
Q  262 acattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatat 361  Q
    |||||        |||||||||||||| | |||||| |||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  28040764 acatt--------gaaattttgatatagtcttatttagtttgataaaattacaaagttttatgaattttcatggtacacttgattgtgaatttattatat 28040855  T
Q  362 tttt-atatggttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttg 460  Q
    |||| |||  |||||||||||  ||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| |||||||    
T  28040856 tttttatacagttactagccttgtaagttaaaaattagatttgagaaaaataaataatcgtgtccttgtgtgtttcccttctagttggtggtggttgttg 28040955  T
Q  461 tctctcactaagtccttgtaacttactctttctttttctat 501  Q
    ||||||||||||||||||| |||||||||||  ||||||||    
T  28040956 tctctcactaagtccttgtgacttactcttttattttctat 28040996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 160 - 486
Target Start/End: Original strand, 27527203 - 27527531
Alignment:
Q  160 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 259  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  27527203 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 27527302  T
Q  260 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattat 359  Q
    | |||||        |||||||||||||| | ||||||||||||||||| ||| |||||||||||||||||||||||| |||||||| ||||||||||||    
T  27527303 cgacatt--------gaaattttgatatagtcttatttggtttgataaaattagaaagttttatgaattttcatggtacacttgattgtgaatttattat 27527394  T
Q  360 atttttatatggttactagcctcataagttaaaaattagatttgag---------aaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtg 450  Q
    |||||||||  |||||||||||  ||||||||||||||||||||||         ||||| ||| | ||||||||||||||||||||||| |||||||||    
T  27527395 atttttatacagttactagccttgtaagttaaaaattagatttgagaaaagaaaaaaaaaaaaaaattcgtgcccttgtgtgtttcccttctagttggtg 27527494  T
Q  451 gtagttgttgtct-ctcactaagtccttgtaacttac 486  Q
    || |||||||||| ||||||||||| |||| ||||||    
T  27527495 gtggttgttgtctcctcactaagtctttgtgacttac 27527531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 165; E-Value: 6e-88
Query Start/End: Original strand, 160 - 474
Target Start/End: Original strand, 33055601 - 33055905
Alignment:
Q  160 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 259  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  33055601 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 33055700  T
Q  260 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattat 359  Q
    |||||||        |||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||| ||||   | ||||||||||||    
T  33055701 caacatt--------gaaattttgatatagtcttatttggtttgataaaattacaaagttttatgaattttcatggtacactt---tgtgaatttattat 33055789  T
Q  360 atttttatatggttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgtt 459  Q
    ||||||||   |||| ||||||  ||||||||||||||||||||||||||||||||| |||||||| | |||||||||||| || ||||||||  |||||    
T  33055790 atttttattcagttattagccttgtaagttaaaaattagatttgagaaaaataaataatcgtgcccatatgtgtttcccttctatttggtggtgattgtt 33055889  T
Q  460 gtct-ctcactaagtc 474  Q
    |||| |||||||||||    
T  33055890 gtctcctcactaagtc 33055905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 107; E-Value: 2e-53
Query Start/End: Original strand, 271 - 496
Target Start/End: Original strand, 27684088 - 27684314
Alignment:
Q  271 cattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatatttttatatg 370  Q
    ||||| |||||| ||||| | |||||||||||||| || |||| | |||||  |||||||||||| | ||| |||| ||| ||||| ||||||||||| |    
T  27684088 cattggaattttaatatacttttatttggtttgattaagttacgatgttttccgaattttcatggcacactcgattgtgagtttatcatatttttatacg 27684187  T
Q  371 gttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcact 469  Q
    | ||||||| |  ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||| |||||| |||||||||| ||||||    
T  27684188 ggtactagctttgtaagttaaaaattagatttgagaaaaataaataatcgtgctcttgtgtgtttcccttctagtcggtggtggttgttgtctcctcact 27684287  T
Q  470 aagtccttgtaacttactctttctttt 496  Q
    ||||||||||  |||||||||||||||    
T  27684288 aagtccttgtggcttactctttctttt 27684314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 103; E-Value: 6e-51
Query Start/End: Original strand, 271 - 496
Target Start/End: Original strand, 27691407 - 27691633
Alignment:
Q  271 cattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatatttttatatg 370  Q
    ||||| |||||| ||||| | |||||||||||||| || |||  | |||||  |||||||||||| | ||| |||| ||| ||||| ||||||||||| |    
T  27691407 cattggaattttaatatacttttatttggtttgattaagttaagatgttttccgaattttcatggcacactcgattgtgagtttatcatatttttatacg 27691506  T
Q  371 gttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcact 469  Q
    | ||||||| |  ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||| |||||| |||||||||| ||||||    
T  27691507 ggtactagctttgtaagttaaaaattagatttgagaaaaataaataatcgtgctcttgtgtgtttcccttctagtcggtggtggttgttgtctcctcact 27691606  T
Q  470 aagtccttgtaacttactctttctttt 496  Q
    ||||||||||  |||||||||||||||    
T  27691607 aagtccttgtggcttactctttctttt 27691633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 293 - 474
Target Start/End: Original strand, 33063205 - 33063384
Alignment:
Q  293 tatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatatttttatatggttactagcctcataagttaaa 392  Q
    |||||||||||||||| |||||||||||||||||||||||||||| ||||   | |||||||||||||||||||||  |||||||||||  |||||||||    
T  33063205 tatttggtttgataaaattacaaagttttatgaattttcatggtacactt---tgtgaatttattatatttttatacagttactagccttgtaagttaaa 33063301  T
Q  393 aattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtc 474  Q
    |||||||||||||||||||||||| |||||||| || |||||||| || || ||||||||  ||||||||| |||||||||||    
T  33063302 aattagatttgagaaaaataaataatcgtgcccatgcgtgtttccattctatttggtggtgattgttgtctcctcactaagtc 33063384  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 160 - 501
Target Start/End: Original strand, 27650961 - 27651295
Alignment:
Q  160 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 259  Q
    |||| ||||| || ||||| |||| || || | |||||||||||||||||   ||||||||||||  |||||||||||| ||| ||| ||||||||||      
T  27650961 gattgttatagtctatttggatttgattatttggattccttttcattatacatgatttctatatttcctttaaagttgttgatttggattcacctcttac 27651060  T
Q  260 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtata--cttgattatgaatttatt 357  Q
     ||         ||||| ||||||||||| ||||||||| ||||||||||||||||| |||| |||||||||||||||||  ||||||| ||||||||||    
T  27651061 gaa---------attgatattttgatatagtattatttgatttgataaatttacaaaattttctgaattttcatggtatactcttgattgtgaatttatt 27651151  T
Q  358 atattttt-atatggttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagtt 456  Q
    |||||||| | | | |||| ||| |  ||| || ||||| |||||||||||||  ||||| | |||| || |||||||||| || ||||||||||| |||    
T  27651152 atatttttaaaacgattacaagctttgtaaatt-aaaatcagatttgagaaaataaaataattgtgctctcgtgtgtttcctttctagttggtggtggtt 27651250  T
Q  457 gttgtctctcactaagtccttgtaacttactctttctttttctat 501  Q
    ||||||||||||||||||||||| ||||||| |||  ||||||||    
T  27651251 gttgtctctcactaagtccttgtgacttactattttattttctat 27651295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 161 - 551
Target Start/End: Complemental strand, 15970657 - 15970279
Alignment:
Q  161 atttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgac 260  Q
    |||||||||||| ||||| |||| || || ||||| ||||||||||||    |||||||||||| |  |||||||||||||| ||| ||||||| |  ||    
T  15970657 atttttatattcgatttggatttgattatttcgat-ccttttcattatggatgatttctatattctaattaaagttgtggatttgggttcacctttgtac 15970559  T
Q  261 aacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattata 360  Q
            | |||||  |||||||| || | ||||||||||||||||| ||||||||||||  ||||||||| |||| ||| |||||||| || ||||||    
T  15970558 --------gacattgcgattttgatgtagtcttatttggtttgataaagttacaaagttttccgaattttcaaggtacactagattatgagttgattata 15970467  T
Q  361 tttttatatggttactagcctcataagttaaaaattagatttgagaaaaataa-atagtcgtgcccttgtgtgtttcccttttagttggtggtagttgtt 459  Q
    |||||||| || |||||   |  ||| || ||||||||||||||||||| |||  || ||||||||||||||||| ||||| ||||||||||| ||||||    
T  15970466 tttttatacgggtacta--tttgtaaatt-aaaattagatttgagaaaagtaatttaatcgtgcccttgtgtgttgcccttctagttggtggtggttgtt 15970370  T
Q  460 gtctctcactaagtccttgtaacttactctttctttttctatannnnnnnnccagattttcaagcagttgggtagaaagctgctagtagact 551  Q
    |||||||||||||||||||| ||||| |||||  ||||||||          ||||||| |||||||||  |||||||||||||||||||||    
T  15970369 gtctctcactaagtccttgtgacttattcttttattttctat-tattttcttcagatttccaagcagttaagtagaaagctgctagtagact 15970279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 331 - 496
Target Start/End: Original strand, 17357635 - 17357801
Alignment:
Q  331 catggtatacttgattatgaatttattatatttttatatggttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtg 430  Q
    ||||||||||| |||| ||| ||||| |||||||||||  | ||||||| |  ||||||||||||||||||||||||||||||||| |||||||||||||    
T  17357635 catggtatactcgattgtgagtttatcatatttttatacaggtactagctttgtaagttaaaaattagatttgagaaaaataaataatcgtgcccttgtg 17357734  T
Q  431 tgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaacttactctttctttt 496  Q
    ||||| |||| |||| |||||| |||||||||| ||||||||||||||||  |||||||||||||||    
T  17357735 tgttttccttctagtcggtggtggttgttgtctcctcactaagtccttgtggcttactctttctttt 17357801  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 277 - 486
Target Start/End: Original strand, 6952290 - 6952498
Alignment:
Q  277 aattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatatttttatatggttact 376  Q
    |||||||||||| | ||||||||||||||||||| |||||| |||  |||||||||||||| |||| ||| ||| ||||||| ||||||||| ||||| |    
T  6952290 aattttgatatagtcttatttggtttgataaattcacaaagattttcgaattttcatggtacactttattgtgagtttattacatttttatacggttagt 6952389  T
Q  377 agcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtcct 476  Q
    | | |  ||| || |||||| ||||||||||||  ||||| |||||||||||||||||| |||| || || ||||| |||||||||||||||||||||||    
T  6952390 aactttgtaaatt-aaaatttgatttgagaaaaggaaataatcgtgcccttgtgtgttttccttctacttagtggtggttgttgtctctcactaagtcct 6952488  T
Q  477 tgtaacttac 486  Q
    ||| ||||||    
T  6952489 tgtgacttac 6952498  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 160 - 266
Target Start/End: Original strand, 33062984 - 33063090
Alignment:
Q  160 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 259  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  33062984 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 33063083  T
Q  260 caacatt 266  Q
    | |||||    
T  33063084 cgacatt 33063090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 400 - 486
Target Start/End: Original strand, 9815053 - 9815140
Alignment:
Q  400 tttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaacttac 486  Q
    ||||||||||  ||||| |||||| |||||||||||||||| |||||||| || |||||||||| ||||||||||| |||| ||||||    
T  9815053 tttgagaaaagaaaataatcgtgctcttgtgtgtttcccttctagttggtagtggttgttgtctgctcactaagtctttgtgacttac 9815140  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 396 - 501
Target Start/End: Complemental strand, 16694165 - 16694059
Alignment:
Q  396 tagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaacttactctttctt 494  Q
    |||||||||||||  ||| || | |||||| ||||||||| |||| |||| |||||| |||||||||| ||||||||||||| ||  ||||||||||| |    
T  16694165 tagatttgagaaacttaattacttgtgcccatgtgtgttttccttctagtcggtggttgttgttgtctcctcactaagtcctcgtggcttactctttcat 16694066  T
Q  495 tttctat 501  Q
    |||||||    
T  16694065 tttctat 16694059  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 163 - 336
Target Start/End: Original strand, 17355375 - 17355540
Alignment:
Q  163 ttttatattcaatttgaatttaatcatctcgattcctttt-cattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgaca 261  Q
    |||||||||| ||||| |||| || || |||||||||||| |||||||  ||||| ||||||| ||||||||||||||||| ||| ||||| || | ||     
T  17355375 ttttatattctatttggatttgattatttcgattcctttttcattatacgcgatt-ctatattttctttaaagttgtggatttgggttcacttccttac- 17355472  T
Q  262 acattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggt 336  Q
           | ||||| |||||| ||||| | ||||||||||||||||| |||| | |||||  |||||||||||||    
T  17355473 -------gacattggaattttaatatacttttatttggtttgataaagttacgatgttttccgaattttcatggt 17355540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 418 - 496
Target Start/End: Complemental strand, 13142075 - 13141996
Alignment:
Q  418 tcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctc-tcactaagtccttgtaacttactctttctttt 496  Q
    ||||||||  ||||||| ||||| | ||  ||||| ||||||||||| |||||||||||||||  |||||||||||||||    
T  13142075 tcgtgcccaagtgtgttacccttcttgtcagtggtggttgttgtctcctcactaagtccttgtggcttactctttctttt 13141996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 474
Target Start/End: Original strand, 30130534 - 30130609
Alignment:
Q  400 tttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtc 474  Q
    |||||||||  ||| || |||||| | |||||||||||||| |||||||||||  ||||||||| |||||||||||    
T  30130534 tttgagaaacttaattactcgtgctcatgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtc 30130609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 224; Significance: 1e-123; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 224; E-Value: 1e-123
Query Start/End: Original strand, 152 - 595
Target Start/End: Original strand, 44324032 - 44324462
Alignment:
Q  152 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 251  Q
    ||||||| || |||||||||| ||||| |||| || ||||||||| ||||||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  44324032 ttaagtccgacttttatattctatttggatttgattatctcgatttcttttcattataatcgatttctatattttctttaaagttgtggatttgatttca 44324131  T
Q  252 cctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaa 351  Q
    ||||||||| |||||        |||||| |||||   | |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||     
T  44324132 cctcttgacgacatt--------gaaattctgatag--tcttatttggtttgataaatttacaaagttttatgaattttcatggtacacttgattgtgag 44324221  T
Q  352 tttattatatttttatatggttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtgg 451  Q
    ||||||||||||||||| ||||||||| ||  ||| |||||||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||    
T  44324222 tttattatatttttatacggttactagtcttgtaaattaaaaattagatttgagaagaataaataatcgtgcccttgtgtgtttcccttctagttggtgg 44324321  T
Q  452 tagttgttgtctctcactaagtccttgtaacttactctttctttttctatannnnnnnnccagattttcaagcagttgggtagaaagctgctagtagact 551  Q
    | |||||||||||||||||||||||||  ||||||||||||| |||||||         |||||||||||||||| || |||||||||||||||||||||    
T  44324322 tggttgttgtctctcactaagtccttgcgacttactctttctctttctat---ttttttccagattttcaagcagctgagtagaaagctgctagtagact 44324418  T
Q  552 cgaagctcagcagtgtgacattttattggcaggcctccttgatg 595  Q
    ||||||||| | | || ||||||| |||| ||||||||||||||    
T  44324419 cgaagctcaacggcgtcacattttgttggtaggcctccttgatg 44324462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 213 - 501
Target Start/End: Original strand, 45332676 - 45332956
Alignment:
Q  213 gatttctatattatctttaaagttgtggatctggtttcacctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaattta 312  Q
    ||||| |||||| ||||||||||||||||| ||||||||||||||||| |||||        |||||||||||||| | ||||||||||||||||| |||    
T  45332676 gatttatatattttctttaaagttgtggatttggtttcacctcttgacgacatt--------gaaattttgatatagtcttatttggtttgataaaatta 45332767  T
Q  313 caaagttttatgaattttcatggtatacttgattatgaatttattatatttttatatggttactagcctcataagttaaaaattagatttgagaaaaata 412  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||  |||||||||||  |||||||||||||||||||||||||| ||    
T  45332768 caaagttttatgaattttcatggtacacttgattgtgaatttattatatttttatacagttactagccttgtaagttaaaaattagatttgagaaaagta 45332867  T
Q  413 aatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctttctttttctat 501  Q
    |||| |||| |||||||||||||||||| |||||||| || ||||||||||||||||||||||| || |||||||||||  ||||||||    
T  45332868 aataatcgttcccttgtgtgtttcccttctagttggtagtggttgttgtctctcactaagtcctcgtgacttactcttttattttctat 45332956  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 115; E-Value: 4e-58
Query Start/End: Original strand, 163 - 496
Target Start/End: Original strand, 31713836 - 31714161
Alignment:
Q  163 ttttatattcaatttgaatttaatcatctcgattcctttt-cattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgaca 261  Q
    |||||||||| ||||| |||| || || |||||||||||| |||||||  ||||| ||||||| ||||||| ||||||||| ||| ||||| || | |||    
T  31713836 ttttatattctatttggatttgattatttcgattcctttttcattatacgcgatt-ctatattttctttaa-gttgtggatttgggttcacttccttaca 31713933  T
Q  262 acattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatat 361  Q
    |||||        | |||||| ||||| | |||||||||||||| || |||| | |||||  |||||||||||| | ||| |||| ||| ||||| ||||    
T  31713934 acatt--------ggaattttaatatacttttatttggtttgattaagttacgatgttttccgaattttcatggcacactcgattgtgagtttatcatat 31714025  T
Q  362 ttttatatggttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgt 461  Q
    ||||||| || ||||||| |  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||| |||||| ||||||||    
T  31714026 ttttatacgggtactagctttgtaagttaaaaattagatttgagaaaaataaataatcgtgcccttgtgtgtttcccttctagtcggtggtggttgttgt 31714125  T
Q  462 ct-ctcactaagtccttgtaacttactctttctttt 496  Q
    || ||||||||||||||||  |||||||||||||||    
T  31714126 ctcctcactaagtccttgtggcttactctttctttt 31714161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 271 - 496
Target Start/End: Complemental strand, 39154860 - 39154633
Alignment:
Q  271 cattgaaattttgatataatattatttggtttgataaatttacaaagttttat-gaattttcatggtatacttgattatgaatttattatatttttatat 369  Q
    ||||| |||||| ||||| | |||||||||||||| || |||| | |||||   |||||||||||| | ||| |||| ||| ||||| |||||||||||     
T  39154860 cattggaattttaatatacttttatttggtttgattaagttacgatgtttttccgaattttcatggcacactcgattgtgagtttatcatatttttatac 39154761  T
Q  370 ggttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcac 468  Q
    || ||||||| |  ||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |||| |||||| |||||||||| |||||    
T  39154760 gggtactagctttgtaagttaaaaattagatttgagaaaaataaataatcgtgctcttgtgtgtttcccttctagtcggtggtggttgttgtctcctcac 39154661  T
Q  469 taagtccttgtaacttactctttctttt 496  Q
    |||||||||||  |||||||||||||||    
T  39154660 taagtccttgtggcttactctttctttt 39154633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 314 - 501
Target Start/End: Complemental strand, 808765 - 808579
Alignment:
Q  314 aaagttttatgaattttcatggtatacttgattatgaatttattatatttttatatggttactagcctcataagttaaaaattagatttgagaaaaataa 413  Q
    |||| ||| |||||||||| |||| ||||| ||  || ||||||||||||||||| ||||| ||   |  ||| |||||| ||||||||||||||| |||    
T  808765 aaagatttctgaattttcacggtacacttgtttgggagtttattatatttttatacggttaataattttgtaaattaaaa-ttagatttgagaaaagtaa 808667  T
Q  414 atagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctttctttttctat 501  Q
     || |||||| |||||| ||||||| | |||||||||||  ||||||||||||||||||||| ||| |||||||||||  ||||||||    
T  808666 ctaatcgtgctcttgtgggtttcccctctagttggtggtgattgttgtctctcactaagtccctgtgacttactcttttattttctat 808579  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 161 - 242
Target Start/End: Original strand, 2588117 - 2588198
Alignment:
Q  161 atttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggat 242  Q
    |||||||||||| ||||| |||| || |||| ||||||||||||||||||||||||| |||||| |||||||||||||||||    
T  2588117 atttttatattctatttggatttgattatcttgattccttttcattataatcgatttatatattttctttaaagttgtggat 2588198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 394 - 486
Target Start/End: Original strand, 4406347 - 4406440
Alignment:
Q  394 attagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtc-tctcactaagtccttgtaacttac 486  Q
    |||||||||||||||||||| || ||||||| ||||||||||||||| |||||||| || ||||||||| |||||||||||| |||| ||||||    
T  4406347 attagatttgagaaaaataactattcgtgccattgtgtgtttcccttctagttggtagtggttgttgtcttctcactaagtctttgtgacttac 4406440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 152 - 251
Target Start/End: Complemental strand, 808909 - 808810
Alignment:
Q  152 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 251  Q
    ||||||| || |||||||||| ||||| |||| || |||||||||| |||||||||||  || |||||||||| |||||||| |||||||| ||| ||||    
T  808909 ttaagtccgacttttatattctatttggatttgattatctcgattctttttcattatacgcggtttctatattttctttaaaattgtggatttgggttca 808810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 401 - 486
Target Start/End: Complemental strand, 9311150 - 9311064
Alignment:
Q  401 ttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtc-tctcactaagtccttgtaacttac 486  Q
    |||||||||  ||||| | ||||||||||||||||||||| |||||||| || ||||||||| ||||||||||||||| | ||||||    
T  9311150 ttgagaaaagaaaataattgtgcccttgtgtgtttcccttctagttggtagtggttgttgtcttctcactaagtccttatgacttac 9311064  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 160 - 217
Target Start/End: Original strand, 45331962 - 45332019
Alignment:
Q  160 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgattt 217  Q
    ||||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||    
T  45331962 gatttttatattctatttggatttgattatctcgattccttttcattataatcgattt 45332019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 418 - 474
Target Start/End: Original strand, 10416155 - 10416212
Alignment:
Q  418 tcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtc 474  Q
    |||||||| |||||||||||||| |||||||||||  ||||||||| |||||||||||    
T  10416155 tcgtgcccatgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtc 10416212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 400 - 474
Target Start/End: Original strand, 4698095 - 4698170
Alignment:
Q  400 tttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtc 474  Q
    |||||||||  ||| || ||||| || |||||||||||||| |||||||||||  ||||||||| |||||||||||    
T  4698095 tttgagaaacttaattactcgtgtccatgtgtgtttcccttatagttggtggtgattgttgtctcctcactaagtc 4698170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 160 - 567
Target Start/End: Original strand, 19434968 - 19435363
Alignment:
Q  160 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 259  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  19434968 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 19435067  T
Q  260 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattat 359  Q
    | |||||        |||||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||||||    
T  19435068 cgacatt--------gaaattttgatatagtcttatttggtttgataaaattacaaagttttatgaattttcatggtacacttgattgtgaatttattat 19435159  T
Q  360 atttttatatggttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgtt 459  Q
    |||||||||  |||||||||||   |||||||||||||||||||||||||||||||| ||||| |||| || ||||||||| ||||||||||| ||||||    
T  19435160 atttttatacagttactagccttgaaagttaaaaattagatttgagaaaaataaataatcgtgtccttttgcgtttcccttctagttggtggtggttgtt 19435259  T
Q  460 gtctctcactaagtccttgtaacttactctttctttttctatannnnnnnnccagattttcaagcagttgggtagaaagctgctagtagactcgaagctc 559  Q
    ||||||||||||||||||||||||||||||||  ||||||||          ||||||||||||||| |  |||| ||||||||||||||||| ||| ||    
T  19435260 gtctctcactaagtccttgtaacttactcttttattttctat----ttttttcagattttcaagcagctaagtaggaagctgctagtagactcaaagttc 19435355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 179; E-Value: 3e-96
Query Start/End: Original strand, 152 - 486
Target Start/End: Original strand, 28103769 - 28104096
Alignment:
Q  152 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 251  Q
    ||||| ||||||||||||||| ||||| |||| || ||||||||||||||||||||||||| |||| |||||| ||||||||||||||||| ||||||||    
T  28103769 ttaagcctgatttttatattctatttggatttgattatctcgattccttttcattataatcaatttatatattttctttaaagttgtggatttggtttca 28103868  T
Q  252 cctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaa 351  Q
    ||||||||| |||||        || ||||||||||| | ||||||||||||||||| |||||||||||||||||||||||||||| |||||||  ||||    
T  28103869 cctcttgacgacatt--------gagattttgatatagtcttatttggtttgataaaattacaaagttttatgaattttcatggtacacttgatggtgaa 28103960  T
Q  352 tttattatatttttatatggttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtgg 451  Q
    |||||||||||||||||  |||||||||||   |||| ||||||||||||||||| ||||||||| ||||||||||||||||||||||| ||||||||||    
T  28103961 tttattatatttttatacagttactagccttgaaagtaaaaaattagatttgagataaataaataatcgtgcccttgtgtgtttcccttctagttggtgg 28104060  T
Q  452 tagttgttgtct-ctcactaagtccttgtaacttac 486  Q
    | |||||| ||| ||||||||||| |||| ||||||    
T  28104061 tggttgttttctcctcactaagtctttgtgacttac 28104096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 174; E-Value: 3e-93
Query Start/End: Original strand, 152 - 486
Target Start/End: Complemental strand, 28069116 - 28068794
Alignment:
Q  152 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 251  Q
    ||||||| ||||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  28069116 ttaagtccgatttttatattctatttggatttgattatctcgattccttttcattataatcgatttctatattttctttaaagttgtggatttgatttca 28069017  T
Q  252 cctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaa 351  Q
    | ||||||| |||||        ||||||||||||   | ||||||||||||||| ||||||||||||||||||||||||||||||    ||||| |||     
T  28069016 cttcttgacgacatt--------gaaattttgatag--tcttatttggtttgatagatttacaaagttttatgaattttcatggtac---tgattgtgag 28068930  T
Q  352 tttattatatttttatatggttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtgg 451  Q
    ||||||||||||||||| ||||||||||||  ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  28068929 tttattatatttttatacggttactagccttgtaaattaaaaattagatttgagaaaaataaatattcgtgcccttgtgtgtttcccttctagttggtgg 28068830  T
Q  452 tagttgttgtct-ctcactaagtccttgtaacttac 486  Q
    | |||||||||| ||||||||||| |||| ||||||    
T  28068829 tggttgttgtctcctcactaagtctttgtgacttac 28068794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 152 - 486
Target Start/End: Complemental strand, 28058691 - 28058369
Alignment:
Q  152 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 251  Q
    ||||||| ||||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  28058691 ttaagtccgatttttatattctatttggatttgattatctcgattccttttcattataatcgatttctatattttctttaaagttgtggatttgatttca 28058592  T
Q  252 cctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaa 351  Q
    | ||||||| |||||        |||||| |||||   | ||||||||||||||| ||||||||||||||||||||||||||||||    ||||| |||     
T  28058591 cttcttgacgacatt--------gaaattctgatag--tcttatttggtttgatagatttacaaagttttatgaattttcatggtac---tgattgtgag 28058505  T
Q  352 tttattatatttttatatggttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtgg 451  Q
    ||||||||||||||||| ||||||||||||  ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||    
T  28058504 tttattatatttttatacggttactagccttgtaaattaaaaattagatttgagaaaaataaatattcgtgcccttgtgtgtttcccttctagttggtgg 28058405  T
Q  452 tagttgttgtct-ctcactaagtccttgtaacttac 486  Q
    | |||||||||| ||||||||||| |||| ||||||    
T  28058404 tggttgttgtctcctcactaagtctttgtgacttac 28058369  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 164; E-Value: 2e-87
Query Start/End: Original strand, 160 - 485
Target Start/End: Complemental strand, 6911564 - 6911242
Alignment:
Q  160 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggttt-cacctcttg 258  Q
    ||||||||||||| ||||| | || || |||||||||| ||||||||||||||||||| |||||| ||||||||||||||||| |||||| |||||||||    
T  6911564 gatttttatattctatttggacttgattatctcgattctttttcattataatcgatttatatattttctttaaagttgtggatttggttttcacctcttg 6911465  T
Q  259 acaacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttatta 358  Q
    || ||     | |||||||||| |||||||   ||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||  ||||||||||    
T  6911464 acgac-----gacattgaaattctgatatagccttatttggtttgataaaattaccaagttttatgaattttcatggtacacttgattgcgaatttatta 6911370  T
Q  359 tatttttatatggttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgt 458  Q
    ||||||||||  |||||||||||  |||||||||||||||||||||||||||||| || ||||||| ||||||||||||||| |||||||| || |||||    
T  6911369 tatttttatacagttactagccttgtaagttaaaaattagatttgagaaaaataactattcgtgccattgtgtgtttcccttctagttggtagtggttgt 6911270  T
Q  459 tgtc-tctcactaagtccttgtaactta 485  Q
    |||| |||||||||||| |||| |||||    
T  6911269 tgtcttctcactaagtctttgtgactta 6911242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 63; E-Value: 4e-27
Query Start/End: Original strand, 199 - 342
Target Start/End: Original strand, 11200699 - 11200834
Alignment:
Q  199 ttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgacaacattttgtcattgaaattttgatataatattatttg 298  Q
    ||||||||||| ||||||| ||||||  ||||| |||| | ||| |||||||||||||| || |||||        | |||||||||||| | |||||||    
T  11200699 ttttcattatactcgatttatatatttcctttatagttattgatttggtttcacctctttacgacatt--------ggaattttgatatagttttatttg 11200790  T
Q  299 gtttgataaatttacaaagttttatgaattttcatggtatactt 342  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  11200791 gtttgataaatttacaaagttttatgaattttcatggtatactt 11200834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 400 - 491
Target Start/End: Complemental strand, 17954784 - 17954693
Alignment:
Q  400 tttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactcttt 491  Q
    ||||||||| ||| ||| |||||| ||| |||||||||||| |||| ||| || |||||||||||||||||||||||||| |||||||||||    
T  17954784 tttgagaaatatacataatcgtgctcttttgtgtttcccttctagtgggtagtggttgttgtctctcactaagtccttgtgacttactcttt 17954693  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 428 - 489
Target Start/End: Complemental strand, 23397984 - 23397923
Alignment:
Q  428 gtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactct 489  Q
    ||||||||||||| ||||||||||| |||||||||||||||||||||| ||| |||||||||    
T  23397984 gtgtgtttcccttctagttggtggtggttgttgtctctcactaagtccctgtgacttactct 23397923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 427 - 501
Target Start/End: Complemental strand, 9436076 - 9436001
Alignment:
Q  427 tgtgtgtttcccttttagttggtggtagttgttgtctctc-actaagtccttgtaacttactctttctttttctat 501  Q
    ||||||||| |||| ||||||||||| ||||||||||| | ||||||||||||| |||||||||||| ||||||||    
T  9436076 tgtgtgttttccttatagttggtggtggttgttgtctccccactaagtccttgtgacttactctttcattttctat 9436001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 418 - 474
Target Start/End: Complemental strand, 5705547 - 5705490
Alignment:
Q  418 tcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtc 474  Q
    ||||||||||||||||||||||| |||||||||||  ||||||||| |||||||||||    
T  5705547 tcgtgcccttgtgtgtttcccttctagttggtggtgattgttgtctcctcactaagtc 5705490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 194; Significance: 1e-105; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 152 - 501
Target Start/End: Complemental strand, 5519712 - 5519373
Alignment:
Q  152 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttca 251  Q
    ||||||| ||||||||||||| ||||| |||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||    
T  5519712 ttaagtccgatttttatattctatttggatttgattatctcgattccttttcattataatcgatttctatattttctttaaagttgtggatttgatttca 5519613  T
Q  252 cctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaa 351  Q
    ||||||||  |||||        |||||| |||||   | |||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||     
T  5519612 cctcttgaagacatt--------gaaattctgatag--tcttatttggtttgataaatttacaaagttttatgaattttcatggtacacttgattgtgag 5519523  T
Q  352 tttattatatttttatatggttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtgg 451  Q
    ||||||||||||||||| ||||||||||||  ||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||| || |||||||    
T  5519522 tttattatatttttatacggttactagccttgtaaattaaaaattagatttgagaaaaataaataatcgtgcccttgtgtgtttcccttctatttggtgg 5519423  T
Q  452 tagttgttgtctctcactaagtccttgtaacttactctttctttttctat 501  Q
    |  ||||||||||||||||||||| ||| |||||||||||  ||||||||    
T  5519422 tgattgttgtctctcactaagtccctgtgacttactcttttattttctat 5519373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 162 - 501
Target Start/End: Original strand, 42785455 - 42785783
Alignment:
Q  162 tttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgaca 261  Q
    ||||||||||  ||||| |||| || |||||||||| |||||||||||||||||||||||||| ||||||||||||||||| || ||||||||||||||     
T  42785455 tttttatattttatttggatttgattatctcgattcattttcattataatcgatttctatattttctttaaagttgtggatttgatttcacctcttgacg 42785554  T
Q  262 acattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatat 361  Q
    |||||        ||||||  ||||   | || ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||  ||||||    
T  42785555 acatt--------gaaattccgatag--tcttgtttggtttgataaatttacaaagttttatgaattttcatggtacacttgattgtgagttg-ttatat 42785643  T
Q  362 ttttatatggttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgt 461  Q
    ||||||| ||||||||||||  ||| |||||||||||||||||||||| ||| || |||||| |||||||||||||||| |||||||||||  |||||||    
T  42785644 ttttatacggttactagccttgtaaattaaaaattagatttgagaaaagtaactaatcgtgctcttgtgtgtttcccttctagttggtggtgattgttgt 42785743  T
Q  462 ctctcactaagtccttgtaacttactctttctttttctat 501  Q
    |||||||||||||| ||| |||||||||||  ||||||||    
T  42785744 ctctcactaagtccctgtgacttactcttttattttctat 42785783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 400 - 501
Target Start/End: Original strand, 15599016 - 15599117
Alignment:
Q  400 tttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctttctttttct 499  Q
    |||||||||| |||||| |||||||| |||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||  ||||||    
T  15599016 tttgagaaaagtaaataatcgtgcccatgtgtgtttcccttctagttggtggtggttgttgtctctcactaagtccttgtgacttactctttaattttct 15599115  T
Q  500 at 501  Q
    ||    
T  15599116 at 15599117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 160 - 339
Target Start/End: Original strand, 15598659 - 15598829
Alignment:
Q  160 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 259  Q
    ||||||||||||| ||||| |||| || || ||||||||||| |||||||  ||||||||||||| ||||||||||||||||| ||| |||||||||| |    
T  15598659 gatttttatattctatttggatttgattatttcgattccttt-cattatacgcgatttctatattttctttaaagttgtggatttggattcacctcttta 15598757  T
Q  260 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtata 339  Q
    |        | |||||| ||||||||||| | |||||| |||||||||||||| || |||||||||||||||||| ||||    
T  15598758 c--------gacattgagattttgatatagtcttatttcgtttgataaatttaaaaggttttatgaattttcatgttata 15598829  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 277 - 334
Target Start/End: Complemental strand, 27198431 - 27198374
Alignment:
Q  277 aattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatg 334  Q
    |||||||||||| |  |||||||||| |||||||||||||||||| ||||||||||||    
T  27198431 aattttgatatagtcatatttggtttaataaatttacaaagttttctgaattttcatg 27198374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 394 - 484
Target Start/End: Complemental strand, 27198289 - 27198198
Alignment:
Q  394 attagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaactt 484  Q
    |||||||||||||||  ||| || | |||| ||||||||||| | || ||||||||||| |||||||||| ||||||||||| |||| ||||    
T  27198289 attagatttgagaaagttaactatttgtgctcttgtgtgtttacgttctagttggtggtggttgttgtctcctcactaagtctttgtgactt 27198198  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 186; Significance: 1e-100; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 213 - 567
Target Start/End: Complemental strand, 27561317 - 27560975
Alignment:
Q  213 gatttctatattatctttaaagttgtggatctggtttcacctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaattta 312  Q
    ||||| |||||| ||||||||||||||||| ||||||||||||||||| |||||        |||||||||||||| | ||||||||||||||||| |||    
T  27561317 gatttatatattttctttaaagttgtggatttggtttcacctcttgacgacatt--------gaaattttgatatagtcttatttggtttgataaaatta 27561226  T
Q  313 caaagttttatgaattttcatggtatacttgattatgaatttattatatttttatatggttactagcctcataagttaaaaattagatttgagaaaaata 412  Q
    ||||||||||||||||||||||||| |||||||| |||||||||||||||||||||  |||||||||||  |||||||||||||||||||||||||||||    
T  27561225 caaagttttatgaattttcatggtacacttgattgtgaatttattatatttttataccgttactagccttgtaagttaaaaattagatttgagaaaaata 27561126  T
Q  413 aatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctttctttttctatannnnnnnncc 512  Q
    |||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| |||||||||||  ||||||||          |    
T  27561125 aataatcgtgcccttgtgtgtttcccttctagttggtggtggttgttgtctctcactaagtccttgtgacttactcttttattttctat----ttttttc 27561030  T
Q  513 agattttcaagcagttgggtagaaagctgctagtagactcgaagctcagcagtgt 567  Q
    |||||||||||||| |  |||| ||||||||||||||||| ||| ||||| ||||    
T  27561029 agattttcaagcagctaagtaggaagctgctagtagactcaaagttcagccgtgt 27560975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 180; E-Value: 7e-97
Query Start/End: Original strand, 160 - 486
Target Start/End: Complemental strand, 4763727 - 4763405
Alignment:
Q  160 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 259  Q
    ||||||||||||| ||||| |||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| ||||||||||||||||    
T  4763727 gatttttatattctatttggatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttggtttcacctcttga 4763628  T
Q  260 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattat 359  Q
    | ||     | |||||||||| |||||||   ||||||||||||||||| |||| ||||||||||||||||||||||| ||||||||  |||||||||||    
T  4763627 cgac-----gacattgaaattctgatatagccttatttggtttgataaaattaccaagttttatgaattttcatggtacacttgattgcgaatttattat 4763533  T
Q  360 atttttatatggttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgtt 459  Q
    |||||||||  |||||||||||  |||||||||||||||||||||||||||||| || ||||||| ||||||||||||||| |||||||| || ||||||    
T  4763532 atttttatacagttactagccttgtaagttaaaaattagatttgagaaaaataactattcgtgccattgtgtgtttcccttctagttggtagtggttgtt 4763433  T
Q  460 gtc-tctcactaagtccttgtaacttac 486  Q
    ||| |||||||||||| |||| ||||||    
T  4763432 gtcttctcactaagtctttgtgacttac 4763405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 278 - 501
Target Start/End: Complemental strand, 11512925 - 11512701
Alignment:
Q  278 attttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatatttttatatggttacta 377  Q
    ||||||| ||| | ||||||||||||||||| ||||||||||||  ||||||||||||||||||||||| ||| ||||||||||||||||| |  | |||    
T  11512925 attttgacatagtcttatttggtttgataaagttacaaagttttccgaattttcatggtatacttgattgtgagtttattatatttttatacgcgtgcta 11512826  T
Q  378 gcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtcct 476  Q
     | || ||| || ||||||||||||||||||| ||| || ||| |||||||||||||||||||||||| | || | |||||||||| ||||  |||||||    
T  11512825 tcttcgtaaatt-aaaattagatttgagaaaagtaattaatcgcgcccttgtgtgtttcccttttagtcgatgatggttgttgtctcctcatcaagtcct 11512727  T
Q  477 tgt-aacttactctttctttttctat 501  Q
    ||| || |||||||||  ||||||||    
T  11512726 tgtgaaattactcttttattttctat 11512701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 411 - 501
Target Start/End: Original strand, 51533841 - 51533930
Alignment:
Q  411 taaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctttctttttctat 501  Q
    |||||| ||||||||||||||||||||||| |||| |||||| |||||||||||||||||||||||||| |||||||||||| || |||||    
T  51533841 taaataatcgtgcccttgtgtgtttcccttctagt-ggtggtggttgttgtctctcactaagtccttgtgacttactctttcattgtctat 51533930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 411 - 501
Target Start/End: Complemental strand, 18694217 - 18694128
Alignment:
Q  411 taaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctttctttttctat 501  Q
    |||||| |||||||||||||||||||||||  ||| |||||| |||||||||||||||||||||||||| |||||||||||| || |||||    
T  18694217 taaataatcgtgcccttgtgtgtttcccttccagt-ggtggtggttgttgtctctcactaagtccttgtgacttactctttcattctctat 18694128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 400 - 485
Target Start/End: Complemental strand, 27733678 - 27733593
Alignment:
Q  400 tttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaactta 485  Q
    ||||||||| ||| ||| ||||||||||||||||||||||| |||| ||| || |||||||||||||||||||||||||| |||||    
T  27733678 tttgagaaatatacataatcgtgcccttgtgtgtttcccttctagtgggtagtggttgttgtctctcactaagtccttgtgactta 27733593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 391 - 491
Target Start/End: Complemental strand, 5358635 - 5358535
Alignment:
Q  391 aaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctt 490  Q
    |||||| |||||||||||| |||||| ||||| ||||||||||||| ||| |||| ||| || |||||||||| ||||||||||||| | ||||||||||    
T  5358635 aaaatttgatttgagaaaactaaataatcgtgtccttgtgtgtttctcttctagtgggtagtggttgttgtctttcactaagtccttatgacttactctt 5358536  T
Q  491 t 491  Q
    |    
T  5358535 t 5358535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 394 - 496
Target Start/End: Complemental strand, 54351876 - 54351775
Alignment:
Q  394 attagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctttct 493  Q
    |||||||||||||||  ||||||  ||||| ||||| ||||||| || ||||||||||| ||||||||||||||||||||||| ||  ||||||||||||    
T  54351876 attagatttgagaaag-taaataaccgtgctcttgtatgtttcctttctagttggtggtggttgttgtctctcactaagtcctagtggcttactctttct 54351778  T
Q  494 ttt 496  Q
    |||    
T  54351777 ttt 54351775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 152 - 217
Target Start/End: Complemental strand, 27561397 - 27561332
Alignment:
Q  152 ttaagtctgatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgattt 217  Q
    ||||||| || |||||||||| ||||| |||| || ||||||||||||||||||||||||||||||    
T  27561397 ttaagtccgacttttatattctatttggatttgattatctcgattccttttcattataatcgattt 27561332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 303 - 374
Target Start/End: Complemental strand, 8164542 - 8164473
Alignment:
Q  303 gataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatatttttatatggtta 374  Q
    |||||| |||||||  ||| ||||||||||||||| |||||||| | ||||||||||||||||||| |||||    
T  8164542 gataaaattacaaa--tttgtgaattttcatggtacacttgattgtaaatttattatatttttatacggtta 8164473  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 279 - 335
Target Start/End: Complemental strand, 5358722 - 5358666
Alignment:
Q  279 ttttgatataatattatttggtttgataaatttacaaagttttatgaattttcatgg 335  Q
    |||||||||| | || |||||||| ||||||||| |||||||||||| |||||||||    
T  5358722 ttttgatatagtcttgtttggtttaataaatttataaagttttatgagttttcatgg 5358666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 160 - 252
Target Start/End: Complemental strand, 11513039 - 11512948
Alignment:
Q  160 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcac 252  Q
    ||||||||||||| ||||| |||| || || ||||||||||||||||||    ||||| | |||| ||||||||||||||||| ||| |||||    
T  11513039 gatttttatattctatttggatttgattatttcgattccttttcattatgcatgattt-tttattttctttaaagttgtggatttgggttcac 11512948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 162 - 252
Target Start/End: Complemental strand, 5358824 - 5358734
Alignment:
Q  162 tttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcac 252  Q
    ||||||||||| ||||| |||| || || |  ||||||| |||||||| || |||||||||||  ||||||||| || ||| |||||||||    
T  5358824 tttttatattctatttggatttgattattttcattccttctcattatactctatttctatatttgctttaaagtggtagatttggtttcac 5358734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 61 - 107
Target Start/End: Original strand, 40383358 - 40383404
Alignment:
Q  61 aacatgacagatattttgcaacatgagatattaaatttggctttcaa 107  Q
    ||||||| ||||||||| ||| |||||||||| ||||||||||||||    
T  40383358 aacatgagagatatttttcaatatgagatatttaatttggctttcaa 40383404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 213 - 329
Target Start/End: Complemental strand, 54352078 - 54351969
Alignment:
Q  213 gatttctatattatctttaaagttgtggatctggtttcacctcttgacaacattttgtcattgaaattttgatataatattatttggtttgataaattta 312  Q
    |||||||||| |||||||||| |||||||| ||||||||||| ||       ||  |  |||| |||||||||||  | ||||||||||| |||||||||    
T  54352078 gatttctatactatctttaaaattgtggatttggtttcacctttt-------ttacgatattggaattttgatatggtcttatttggtttaataaattta 54351986  T
Q  313 caaagttttatgaattt 329  Q
    || |||||| |||||||    
T  54351985 cacagttttctgaattt 54351969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 185; Significance: 1e-100; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 160 - 501
Target Start/End: Original strand, 18982382 - 18982714
Alignment:
Q  160 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 259  Q
    ||||||||||||| ||| || ||| || |||||||||||||||||||||||||||||| |||||| |||||||||||||||||  |||||||||||||||    
T  18982382 gatttttatattctattgga-tttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggattgggtttcacctcttga 18982480  T
Q  260 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattat 359  Q
    | |||||        |||||||||| ||| | ||||||||||||||||| |||||||||||||||||||| ||||||| |||||||| |||| |||||||    
T  18982481 cgacatt--------gaaattttgacatagtcttatttggtttgataaaattacaaagttttatgaatttccatggtacacttgattgtgaacttattat 18982572  T
Q  360 atttttatatggttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgtt 459  Q
    |||||||||| |||||||||||  ||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||||| |||||||| || ||||||    
T  18982573 atttttatatagttactagccttgtaagttaaaaattcgatttgagaaaaataaataatcgtgcccttgggtgtttcccttctagttggtagtggttgtt 18982672  T
Q  460 gtctctcactaagtccttgtaacttactctttctttttctat 501  Q
    ||||||||||||||||| || |||||||||||  ||||||||    
T  18982673 gtctctcactaagtcctcgtgacttactcttttattttctat 18982714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 163; E-Value: 9e-87
Query Start/End: Original strand, 162 - 501
Target Start/End: Complemental strand, 4706877 - 4706552
Alignment:
Q  162 tttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgaca 261  Q
    ||||||||||  ||||| |||| || ||||||||||||||||||||||||||||||||||||| ||||||||||||||||| || |||||||||||||||    
T  4706877 tttttatattttatttggatttgattatctcgattccttttcattataatcgatttctatattttctttaaagttgtggatttgatttcacctcttgaca 4706778  T
Q  262 acattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatat 361  Q
    |||||        ||||||     ||| | || ||||||||||||||||||||||||||||||||||||||||||| |||||||| ||| ||  ||||||    
T  4706777 acatt--------gaaatt-----atagtcttgtttggtttgataaatttacaaagttttatgaattttcatggtacacttgattgtgagttg-ttatat 4706692  T
Q  362 ttttatatggttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgt 461  Q
    ||||||| ||||||||||||  ||| |||||||||||||||||||||| ||| || |||||| |||||||||||||||| |||||||||||  |||||||    
T  4706691 ttttatacggttactagccttgtaaattaaaaattagatttgagaaaagtaactaatcgtgctcttgtgtgtttcccttctagttggtggtgattgttgt 4706592  T
Q  462 ctctcactaagtccttgtaacttactctttctttttctat 501  Q
    |||||||||||||| ||| |||||||||||  ||||||||    
T  4706591 ctctcactaagtccctgtgacttactcttttattttctat 4706552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 278 - 491
Target Start/End: Complemental strand, 28603234 - 28603022
Alignment:
Q  278 attttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatatttttatatggttacta 377  Q
    ||||||||||| | ||||||||||||||||| |||||||||||| ||||||||||||||| | |||||  ||| ||||| ||||||||||| || || ||    
T  28603234 attttgatatacttttatttggtttgataaagttacaaagttttctgaattttcatggtacatttgatcgtgagtttatcatatttttatacgggtatta 28603135  T
Q  378 gcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtcctt 477  Q
    || |  ||| |||||| ||||||||||||||| ||| || |||||| |||||||||||||||| |||||||||||  ||||||||||||||||||||| |    
T  28603134 gctttgtaaattaaaa-ttagatttgagaaaagtaactaatcgtgctcttgtgtgtttcccttctagttggtggtgattgttgtctctcactaagtccct 28603036  T
Q  478 gtaacttactcttt 491  Q
     | |||||||||||    
T  28603035 ctgacttactcttt 28603022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 164 - 501
Target Start/End: Complemental strand, 26917567 - 26917241
Alignment:
Q  164 tttatattcaatttgaatttaatcatctcgattcctttt-cattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgacaa 262  Q
    ||||||||| ||||| |||| || || |||||||||||| |||||||  ||||||||||||| ||||||||||||||||| ||| ||||| |||| || |    
T  26917567 tttatattctatttggatttgattatttcgattcctttttcattatacgcgatttctatattttctttaaagttgtggatttgggttcacttctttacga 26917468  T
Q  263 cattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatatt 362  Q
    ||||        | ||||||| |||| | ||||||| ||||  ||| ||| || | ||| |||||||||| |||| ||||| || ||| |||||||||||    
T  26917467 catt--------ggaattttggtatagtcttatttg-tttgtgaaacttataa-gatttctgaattttcacggtacacttgtttgtgagtttattatatt 26917378  T
Q  363 tttatatggttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtc 462  Q
    |||| | ||||| || | |  ||| | |||| || |||||||||||| |||| | ||||||||||||||||||||||| |||| |||||| |||||||||    
T  26917377 tttacacggttagtaactttgtaaatcaaaattt-gatttgagaaaagtaaagaatcgtgcccttgtgtgtttcccttctagt-ggtggtggttgttgtc 26917280  T
Q  463 tctcactaagtccttgtaacttactctttctttttctat 501  Q
    |||||||||||||||||||||||||| ||| ||||||||    
T  26917279 tctcactaagtccttgtaacttactccttcattttctat 26917241  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 277 - 490
Target Start/End: Complemental strand, 26340602 - 26340387
Alignment:
Q  277 aattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtata--cttgattatgaatttattata-tttttatatggtt 373  Q
    |||||||||||| | ||||||| |||||||||||||||||||||| |||||||||||||||||  ||||||| ||| ||||||||| |||||| || |||    
T  26340602 aattttgatatattcttatttgatttgataaatttacaaagttttctgaattttcatggtatactcttgattgtgagtttattatattttttaaattgtt 26340503  T
Q  374 actagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagt 473  Q
    |||| | |  ||| || ||||| | |||||||| ||  ||||| || | | |||||||||||||||| ||||||||||| ||||||||||||||||| ||    
T  26340502 actaactttgtaaatt-aaaatcatatttgagagaagaaaataatcatacacttgtgtgtttcccttctagttggtggtggttgttgtctctcactatgt 26340404  T
Q  474 ccttgtaacttactctt 490  Q
    |||||| ||||||||||    
T  26340403 ccttgtgacttactctt 26340387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 300 - 486
Target Start/End: Original strand, 15925033 - 15925219
Alignment:
Q  300 tttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatatttttatatggttactagcctcataagttaaaaattaga 399  Q
    ||||||||||||| |||| ||| ||||||||||  ||| ||||| ||  || ||||||||||||||||| ||||| || | |  ||| || |||||| ||    
T  15925033 tttgataaatttataaagatttctgaattttcacagtacacttgtttgagagtttattatatttttatacggttaataactttgtaaatt-aaaatttga 15925131  T
Q  400 tttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaacttac 486  Q
    |||||||||| |||||| ||||||| ||||||| ||||||| |||||||||||  ||||||||| ||||||||||| |||| ||||||    
T  15925132 tttgagaaaagtaaataatcgtgccgttgtgtgcttcccttctagttggtggtgattgttgtctcctcactaagtctttgtgacttac 15925219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 152 - 242
Target Start/End: Original strand, 15924891 - 15924982
Alignment:
Q  152 ttaagtctgatttttatattcaatttgaatttaatcatctcgattcctttt-cattataatcgatttctatattatctttaaagttgtggat 242  Q
    ||||||| |||||||| |||| ||||| |||| || || |||||||||||| || ||||  ||||||||||||| |||||||| ||||||||    
T  15924891 ttaagtccgatttttacattctatttggatttgattatttcgattcctttttcactatatgcgatttctatattttctttaaaattgtggat 15924982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0406 (Bit Score: 173; Significance: 1e-92; HSPs: 1)
Name: scaffold0406
Description:

Target: scaffold0406; HSP #1
Raw Score: 173; E-Value: 1e-92
Query Start/End: Original strand, 160 - 567
Target Start/End: Original strand, 3615 - 4007
Alignment:
Q  160 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttga 259  Q
    ||||||||||||| || ||||||| || |||||||||||||||||||||||||||||| |||||| ||||||||||||||||| | ||||||||||||||    
T  3615 gatttttatattctatgtgaatttgattatctcgattccttttcattataatcgatttatatattttctttaaagttgtggatttagtttcacctcttga 3714  T
Q  260 caacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattat 359  Q
    | |||||        |||||||    ||| | ||||||||||||||||| |||| ||||||||||||||||||||||| | |||||| ||||||||||||    
T  3715 cgacatt--------gaaatttg---atagtcttatttggtttgataaaattacgaagttttatgaattttcatggtacatttgattgtgaatttattat 3803  T
Q  360 atttttatatggttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgtt 459  Q
    |||||||||  |||||||||||  ||| |||||||||| ||||||||||| |||| | ||||||||||||||||||||||| |||||||| || ||||||    
T  3804 atttttatacagttactagccttgtaaattaaaaattatatttgagaaaagtaaaaaatcgtgcccttgtgtgtttcccttctagttggtagtggttgtt 3903  T
Q  460 gtctctcactaagtccttgtaacttactctttctttttctatannnnnnnnccagattttcaagcagttgggtagaaagctgctagtagactcgaagctc 559  Q
    |||||||||||||||||||| |||||||||||  ||||||||          ||||||||||||||| |  |||| ||||||||||||||||| ||| ||    
T  3904 gtctctcactaagtccttgtgacttactcttttattttctat----ttttttcagattttcaagcagctaagtaggaagctgctagtagactcaaagttc 3999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 122; Significance: 3e-62; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 122; E-Value: 3e-62
Query Start/End: Original strand, 160 - 595
Target Start/End: Original strand, 60505 - 60929
Alignment:
Q  160 gatttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttg- 258  Q
    |||| |||||||| ||||| |||| || || ||||||||||||||||||  | |||||| ||||| |||||||||||| |||| ||| ||||||| ||      
T  60505 gattgttatattctatttggatttgattatttcgattccttttcattatgcttgatttcgatattttctttaaagttgcggatttggattcacctttttt 60604  T
Q  259 acaacattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttat--gaattttcatggtatacttgattatgaatttat 356  Q
    || |||||| ||       ||||||||||| | |||||||||||||||||  ||| ||||||| |  |||||||||||  | |||||||  ||| |||||    
T  60605 acgacattt-gt-------attttgatatagtcttatttggtttgataaaactaccaagttttttacgaattttcatgagacacttgatcgtgagtttat 60696  T
Q  357 tatatttttatatggttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagtt 456  Q
     ||||||||||| || ||||||| |  ||| |||| | ||||||||||||||| ||| || ||||||||||||||||||||||| ||||||||||| |||    
T  60697 aatatttttatacgggtactagctttgtaaattaata-ttagatttgagaaaagtaattaatcgtgcccttgtgtgtttcccttctagttggtggtggtt 60795  T
Q  457 gttgtctctcactaagtccttgtaacttactctttctttttctatannnnnnnnccagattttcaagcagttgggtagaaagctgctagtagactcgaag 556  Q
    ||||||||||||||||||||||  ||||||||||||| |||||||          ||||||||||||||| || ||||||||| ||||| ||||||||||    
T  60796 gttgtctctcactaagtccttgcgacttactctttctctttctat-----tttttcagattttcaagcagctgagtagaaagcggctagcagactcgaag 60890  T
Q  557 ctcagcagtgtgacattttattggcaggcctccttgatg 595  Q
    |||||| | || ||||||| |||| |||| |||||||||    
T  60891 ctcagcggcgtcacattttgttggtaggcttccttgatg 60929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438 (Bit Score: 101; Significance: 9e-50; HSPs: 2)
Name: scaffold0438
Description:

Target: scaffold0438; HSP #1
Raw Score: 101; E-Value: 9e-50
Query Start/End: Original strand, 162 - 490
Target Start/End: Complemental strand, 7884 - 7563
Alignment:
Q  162 tttttatattcaatttgaatttaatcatctcgattccttttcattataatcgatttctatattatctttaaagttgtggatctggtttcacctcttgaca 261  Q
    |||| |||||| ||||| |||| || || ||||||| ||||||| |||  |  |||||||||| ||||||||||||| ||| ||| ||||||||||  ||    
T  7884 ttttcatattctatttggatttgattatttcgattcattttcatcatacccagtttctatattttctttaaagttgttgatttggattcacctcttacca 7785  T
Q  262 acattttgtcattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtata--cttgattatgaatttattat 359  Q
             ||||| |||||||||||| | ||||||| |||||||||||||||||||||| |||||||||||||||||  ||||||| ||| ||||||||    
T  7784 ---------cattggaattttgatatattcttatttgatttgataaatttacaaagttttctgaattttcatggtatattcttgattgtgagtttattat 7694  T
Q  360 attttt-atatggttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgt 458  Q
    |||||| | || ||||||| | |  ||| || ||||| | |||||||||||  ||||| |||| |||||||||||||||||| ||||||||||| |||||    
T  7693 atttttaaaattgttactaactttgtaaatt-aaaatcatatttgagaaaagaaaataatcgtacccttgtgtgtttcccttctagttggtggtggttgt 7595  T
Q  459 tgtctctcactaagtccttgtaacttactctt 490  Q
    |||||||| ||| |||||||| ||||||||||    
T  7594 tgtctctccctatgtccttgtgacttactctt 7563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0438; HSP #2
Raw Score: 86; E-Value: 8e-41
Query Start/End: Original strand, 277 - 490
Target Start/End: Complemental strand, 10763 - 10548
Alignment:
Q  277 aattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtata--cttgattatgaatttattata-tttttatatggtt 373  Q
    |||||||||||| | ||||||| |||||||||||||||||||||| |||||||||||||||||  ||||||| ||| ||||||||| |||||| || |||    
T  10763 aattttgatatattcttatttgatttgataaatttacaaagttttctgaattttcatggtatactcttgattgtgagtttattatattttttaaattgtt 10664  T
Q  374 actagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagt 473  Q
    |||| | |  ||| || ||||| | |||||||| ||  ||||| || | | |||||||||||||||| ||||||||||| ||||||||||||||||| ||    
T  10663 actaactttgtaaatt-aaaatcatatttgagagaagaaaataatcatacacttgtgtgtttcccttctagttggtggtggttgttgtctctcactatgt 10565  T
Q  474 ccttgtaacttactctt 490  Q
    |||||| ||||||||||    
T  10564 ccttgtgacttactctt 10548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0713 (Bit Score: 93; Significance: 6e-45; HSPs: 1)
Name: scaffold0713
Description:

Target: scaffold0713; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 271 - 486
Target Start/End: Original strand, 780 - 995
Alignment:
Q  271 cattgaaattttgatataatattatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatatttttatatg 370  Q
    ||||| |||||| ||||| | ||||||||||||||||| |||| | |||||   ||||||||||| | ||| |||| ||| || || ||||||||||| |    
T  780 cattggaattttaatatacttttatttggtttgataaagttacgatgttttcctaattttcatggcacactcgattgtgagtt-atcatatttttatacg 878  T
Q  371 gttactagcctcataagttaaaaattagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcact 469  Q
    | ||||||| |  ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| |||| ||||| ||||||    
T  879 ggtactagctttgtaagttaaaaattagatttgagaaaaataaataatcgtgcccttgtgtgtttcccttctagttggtggtggttgatgtctcctcact 978  T
Q  470 aagtccttgtaacttac 486  Q
    ||||| |||| ||||||    
T  979 aagtctttgtgacttac 995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 65; Significance: 3e-28; HSPs: 3)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 394 - 502
Target Start/End: Complemental strand, 412980 - 412872
Alignment:
Q  394 attagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctttct 493  Q
    |||||||||||||||| ||| ||  |||||||||||||||||||||||||||| |||||||||||||||||||| |||| |||||| ||||| |||||      
T  412980 attagatttgagaaaagtaattatccgtgcccttgtgtgtttcccttttagttagtggtagttgttgtctctcattaagaccttgtgacttaatctttta 412881  T
Q  494 ttttctata 502  Q
    |||||||||    
T  412880 ttttctata 412872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #2
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 427 - 502
Target Start/End: Complemental strand, 406944 - 406869
Alignment:
Q  427 tgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactctttctttttctata 502  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||| |||||  |||||||||    
T  406944 tgtgtgtttcccttttagttggtggtggttgttgtctctcactaagtccttgtgacttaatcttttattttctata 406869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002; HSP #3
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 394 - 491
Target Start/End: Complemental strand, 424352 - 424255
Alignment:
Q  394 attagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactcttt 491  Q
    |||||||||||||||| ||| ||   ||||||||||| |||||||||||||||| |||| ||||||||||||||||| |||||||| ||||| |||||    
T  424352 attagatttgagaaaagtaattatcggtgcccttgtgcgtttcccttttagttgatggtggttgttgtctctcactatgtccttgtgacttaatcttt 424255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 62; Significance: 2e-26; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 394 - 491
Target Start/End: Complemental strand, 36264224 - 36264128
Alignment:
Q  394 attagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctctcactaagtccttgtaacttactcttt 491  Q
    |||||||||||||||| |||||| |||||| |||||||||||||||| | ||||||||| |||||||||||||||||||||| ||| |||||||||||    
T  36264224 attagatttgagaaaa-taaataatcgtgctcttgtgtgtttcccttcttgttggtggtggttgttgtctctcactaagtccctgtgacttactcttt 36264128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 300 - 486
Target Start/End: Original strand, 28803653 - 28803838
Alignment:
Q  300 tttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatatttttatatggttactagcctcataagttaaaaattaga 399  Q
    ||||||||||||| |||| ||| |||||||||| |||  ||||| ||  || ||||||||||||||||| | ||| || | |  ||| |  |||||| ||    
T  28803653 tttgataaatttataaagatttctgaattttcacggtgcacttgtttgggagtttattatatttttatacgtttaataactttgtaatt--aaaatttga 28803750  T
Q  400 tttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaacttac 486  Q
    |||||||||| |||||| |||||||||||||| |||||||| |||||||||||  ||||||||| ||||||||||| |||| ||||||    
T  28803751 tttgagaaaagtaaataatcgtgcccttgtgtatttcccttctagttggtggtgattgttgtctcctcactaagtctttgtgacttac 28803838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 278 - 354
Target Start/End: Complemental strand, 36264365 - 36264288
Alignment:
Q  278 attttgatataatattatttggtttgataaatttacaaagttttatgaattttcatg-gtatacttgattatgaattt 354  Q
    |||| |||||||| ||||||||||||||||||||| |||||||| ||||||||||||  || |||||||| |||||||    
T  36264365 atttcgatataatcttatttggtttgataaatttataaagttttctgaattttcatgtatacacttgattgtgaattt 36264288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 412 - 486
Target Start/End: Complemental strand, 44060131 - 44060056
Alignment:
Q  412 aaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtc-tctcactaagtccttgtaacttac 486  Q
    ||||| |||||||||||||||||||| || |||||||| || ||||||||| |||||||||||| |||| ||||||    
T  44060131 aaataatcgtgcccttgtgtgtttcctttctagttggtagtggttgttgtcttctcactaagtctttgtgacttac 44060056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 152 - 251
Target Start/End: Original strand, 28803513 - 28803613
Alignment:
Q  152 ttaagtctgatttttatattcaatttgaatttaatcatctcgattcctttt-cattataatcgatttctatattatctttaaagttgtggatctggtttc 250  Q
    |||||||  ||||||||| || ||||| |||| || || |||||||||||| |||||||  ||||||||||||| |||||||| |||||||| ||| |||    
T  28803513 ttaagtccaatttttatactctatttggatttgattatttcgattcctttttcattatatgcgatttctatattctctttaaaattgtggatttgggttc 28803612  T
Q  251 a 251  Q
    |    
T  28803613 a 28803613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 420 - 492
Target Start/End: Complemental strand, 29466983 - 29466909
Alignment:
Q  420 gtgcccttgtgtgtttccctt-ttagttggtggtagttgttgtct-ctcactaagtccttgtaacttactctttc 492  Q
    ||||||||||||||||||||| | |||||||||| |||||||||| ||| |||| || |||| |||||| |||||    
T  29466983 gtgcccttgtgtgtttcccttctaagttggtggtggttgttgtctcctcgctaaatcattgtgacttaccctttc 29466909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 292 - 372
Target Start/End: Complemental strand, 29467106 - 29467028
Alignment:
Q  292 ttatttggtttgataaatttacaaagttttatgaattttcatggtatacttgattatgaatttattatatttttatatggt 372  Q
    ||||||| || |||||||||| |||  ||||||||||| ||||||| |||||||| |  |||||||| ||||||| |||||    
T  29467106 ttatttgattggataaatttataaa--tttatgaatttccatggtacacttgattgttgatttattaaatttttacatggt 29467028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012 (Bit Score: 60; Significance: 3e-25; HSPs: 2)
Name: scaffold0012
Description:

Target: scaffold0012; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 512 - 595
Target Start/End: Complemental strand, 233479 - 233396
Alignment:
Q  512 cagattttcaagcagttgggtagaaagctgctagtagactcgaagctcagcagtgtgacattttattggcaggcctccttgatg 595  Q
    |||||||||||| || | ||||||||| |||||||||||||||||||||||||||| |||||||||||| ||||||||||||||    
T  233479 cagattttcaagaagctaggtagaaagttgctagtagactcgaagctcagcagtgtcacattttattggtaggcctccttgatg 233396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0012; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 420 - 497
Target Start/End: Complemental strand, 182889 - 182811
Alignment:
Q  420 gtgcccttgtgtgtttcccttttagttggtggtagttgttgtct-ctcactaagtccttgtaacttactctttcttttt 497  Q
    |||| ||||||||||| |||| |||||||||||  ||||||||| ||| |||||| ||||| ||||| |||||| ||||    
T  182889 gtgcacttgtgtgttttccttctagttggtggtgattgttgtctcctccctaagtacttgtgacttagtctttcatttt 182811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0036 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 394 - 483
Target Start/End: Complemental strand, 31792 - 31705
Alignment:
Q  394 attagatttgagaaaaataaatagtcgtgcccttgtgtgtttcccttttagttggtggtagttgttgtctct-cactaagtccttgtaact 483  Q
    |||| |||||||||| |||| || | |||||||||| |||||||||| || ||||||||   |||||||||  ||||||||||||||||||    
T  31792 attatatttgagaaagataactatttgtgcccttgtatgtttcccttctatttggtggt---tgttgtctccgcactaagtccttgtaact 31705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University

This website was viewed 1208 times since January 2019
Visitors: 2389