View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF0200_2D_low_3 (Length: 426)
Name: NF0200_2D_low_3
Description: NF0200_2D
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF0200_2D_low_3 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 395; Significance: 0; HSPs: 15)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 395; E-Value: 0
Query Start/End: Original strand, 1 - 411
Target Start/End: Original strand, 36216879 - 36217289
Alignment:
| Q |
1 |
gtttggtgttgctaattcactgttagggaaacttgcttcttatgcttatgaagaagcctctcgtgcctacggtgtatatgaagatctccaatggatcaaa |
100 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
|
|
| T |
36216879 |
gtttgatgttgctaattcactgttagggaaacttgcttcttatgcttatgaagaagcctctcgtgcctacggtgtatatgaagatctccaacggatcaaa |
36216978 |
T |
|
| Q |
101 |
gataccctatcaattgtcagaggtctactgctagatgctgaggagaagaagaaccggcaacatgccttgtgtgaatggttaaggcagattcaaaacatct |
200 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36216979 |
gatactctatcaattgtcagaggtctactgctagatgctgaggagaagaagaaccggcaacatgccttgtgtgaatggttaaggcagattcaaaacatct |
36217078 |
T |
|
| Q |
201 |
gctatgatgctgaagatgtattggatggatttgagttgcaagacaggagaaagcaatttgttgaagcttctggaagcacacggttgaaggtatgccactt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36217079 |
gctatgatgctgaagatgtattggatggatttgagttgcaagacaggagaaagcaatttgttgaagcttctggaagcacacggttgaaggtatgccactt |
36217178 |
T |
|
| Q |
301 |
cttttcttcctctaatccgcttgctttccgttttaggatgtcacgtcaaatcaaagagattagagatagattggataaagtggcagctgatgggaccaag |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36217179 |
cttttcttcctctaatccgcttgctttccgttttaggatgtcacgtcaaatcaaagagattagagatagattggataaagtggcagctgatgggaccaag |
36217278 |
T |
|
| Q |
401 |
tttggtcttgt |
411 |
Q |
| |
|
||||| ||||| |
|
|
| T |
36217279 |
tttggacttgt |
36217289 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 9 - 409
Target Start/End: Complemental strand, 35978248 - 35977848
Alignment:
| Q |
9 |
ttgctaattcactgttagggaaacttgcttcttatgcttatgaagaagcctctcgtgcctacggtgtatatgaagatctccaatggatcaaagataccct |
108 |
Q |
| |
|
||||| ||||||||||||| |||||||| |||||||||||||||||||| |||| ||||| ||||| ||| ||||||||||| || ||||||| || || |
|
|
| T |
35978248 |
ttgctcattcactgttaggaaaacttgcatcttatgcttatgaagaagcttctctagcctatggtgtgtataaagatctccaagggttcaaagacactct |
35978149 |
T |
|
| Q |
109 |
atcaattgtcagaggtctactgctagatgctgaggagaagaagaaccggcaacatgccttgtgtgaatggttaaggcagattcaaaacatctgctatgat |
208 |
Q |
| |
|
||||||||||| ||| || || | ||||||||| |||||| | | | |||| || |||||||| | |||||||||||||| || ||||||||| |
|
|
| T |
35978148 |
ctcaattgtcagtggtgtattgttggatgctgagtgcaagaaggatcaaaagcatggggtgcgtgaatggctgaggcagattcaaaatatatgctatgat |
35978049 |
T |
|
| Q |
209 |
gctgaagatgtattggatggatttgagttgcaagacaggagaaagcaatttgttgaagcttctggaagcacacggttgaaggtatgccacttcttttctt |
308 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||| | |||||||| |||| |||||||| |||||| |||| |||||||| ||||||||||||||| |
|
|
| T |
35978048 |
gctgaagatgtattggatggatttaacttgcaagacaagcgaaagcaagttgtgaaagcttctcgaagcagacgggtgaaggtacgccacttcttttctt |
35977949 |
T |
|
| Q |
309 |
cctctaatccgcttgctttccgttttaggatgtcacgtcaaatcaaagagattagagatagattggataaagtggcagctgatgggaccaagtttggtct |
408 |
Q |
| |
|
|||||||||| |||| |||||||||||||||| |||||||||||||||||||||| |||||| ||||||| ||||||||||||||| || ||||||||| |
|
|
| T |
35977948 |
cctctaatccacttgttttccgttttaggatggcacgtcaaatcaaagagattagggatagaatggataaggtggcagctgatggggtcaggtttggtct |
35977849 |
T |
|
| Q |
409 |
t |
409 |
Q |
| |
|
| |
|
|
| T |
35977848 |
t |
35977848 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 9 - 409
Target Start/End: Complemental strand, 35999660 - 35999260
Alignment:
| Q |
9 |
ttgctaattcactgttagggaaacttgcttcttatgcttatgaagaagcctctcgtgcctacggtgtatatgaagatctccaatggatcaaagataccct |
108 |
Q |
| |
|
||||| ||||||||||||| |||||||| |||||||||||||||||||| |||| ||||| ||||| ||| ||||||||||| || ||||||| || || |
|
|
| T |
35999660 |
ttgctcattcactgttaggaaaacttgcatcttatgcttatgaagaagcttctctagcctatggtgtgtataaagatctccaagggttcaaagacactct |
35999561 |
T |
|
| Q |
109 |
atcaattgtcagaggtctactgctagatgctgaggagaagaagaaccggcaacatgccttgtgtgaatggttaaggcagattcaaaacatctgctatgat |
208 |
Q |
| |
|
||||||||||| ||| || || | ||||||||| |||||| | | | |||| || |||||||| | |||||||||||||| || ||||||||| |
|
|
| T |
35999560 |
ctcaattgtcagtggtgtattgttggatgctgagtgcaagaaggatcaaaagcatggggtgcgtgaatggctgaggcagattcaaaatatatgctatgat |
35999461 |
T |
|
| Q |
209 |
gctgaagatgtattggatggatttgagttgcaagacaggagaaagcaatttgttgaagcttctggaagcacacggttgaaggtatgccacttcttttctt |
308 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||| | |||||||| |||| |||||||| |||||| |||| |||||||| ||||||||||||||| |
|
|
| T |
35999460 |
gctgaagatgtattggatggatttaacttgcaagacaagcgaaagcaagttgtgaaagcttctcgaagcagacgggtgaaggtacgccacttcttttctt |
35999361 |
T |
|
| Q |
309 |
cctctaatccgcttgctttccgttttaggatgtcacgtcaaatcaaagagattagagatagattggataaagtggcagctgatgggaccaagtttggtct |
408 |
Q |
| |
|
|||||||||| |||| |||||||||||||||| |||||||||||||||||||||| |||||| ||||||| ||||||||||||||| || ||||||||| |
|
|
| T |
35999360 |
cctctaatccacttgttttccgttttaggatggcacgtcaaatcaaagagattagggatagaatggataaggtggcagctgatggggtcaggtttggtct |
35999261 |
T |
|
| Q |
409 |
t |
409 |
Q |
| |
|
| |
|
|
| T |
35999260 |
t |
35999260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 16 - 409
Target Start/End: Complemental strand, 35958786 - 35958393
Alignment:
| Q |
16 |
ttcactgttagggaaacttgcttcttatgcttatgaagaagcctctcgtgcctacggtgtatatgaagatctccaatggatcaaagataccctatcaatt |
115 |
Q |
| |
|
|||||||||||| |||||||| |||||||||||||||||||| ||||||||||| ||||| ||| ||||||| ||| | ||||||| || || |||||| |
|
|
| T |
35958786 |
ttcactgttaggaaaacttgcatcttatgcttatgaagaagcttctcgtgcctatggtgtgtataaagatctacaagagttcaaagacactctctcaatt |
35958687 |
T |
|
| Q |
116 |
gtcagaggtctactgctagatgctgaggagaagaagaaccggcaacatgccttgtgtgaatggttaaggcagattcaaaacatctgctatgatgctgaag |
215 |
Q |
| |
|
||||| ||| || || | ||||||||| |||||| ||| | |||| |||| |||||||| | |||||||||||||| || |||||||||||||||| |
|
|
| T |
35958686 |
gtcagtggtgtattgttggatgctgagtgcaagaaggaccaaaagcatggcttgcgtgaatggctgaggcagattcaaaatatatgctatgatgctgaag |
35958587 |
T |
|
| Q |
216 |
atgtattggatggatttgagttgcaagacaggagaaagcaatttgttgaagcttctggaagcacacggttgaaggtatgccacttcttttcttcctctaa |
315 |
Q |
| |
|
||||||||||||||||||| |||||||||| | |||| ||| |||| ||||||||||||||||||||| |||||||| ||||||| |||||||||||||| |
|
|
| T |
35958586 |
atgtattggatggatttgacttgcaagacaagcgaaaacaagttgtggaagcttctggaagcacacgggtgaaggtacgccacttgttttcttcctctaa |
35958487 |
T |
|
| Q |
316 |
tccgcttgctttccgttttaggatgtcacgtcaaatcaaagagattagagatagattggataaagtggcagctgatgggaccaagtttggtctt |
409 |
Q |
| |
|
| | |||||||||||||||| ||| | | ||||||||||||||||| |||||||||||||| |||||||| |||||| || |||||||||| |
|
|
| T |
35958486 |
ttcacttgctttccgttttaaaatggcgcaccaaatcaaagagattagggatagattggataaggtggcagcggatggggtcatgtttggtctt |
35958393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 146; E-Value: 9e-77
Query Start/End: Original strand, 39 - 411
Target Start/End: Original strand, 36220910 - 36221274
Alignment:
| Q |
39 |
cttatgcttatgaagaagcctctcgtgcctacggtgtatatgaagatctccaatggatcaaagataccctatcaattgtcagaggtctactgctagatgc |
138 |
Q |
| |
|
||||||||| ||| |||| |||||||||||| |||| ||||| ||||||||| |||||||||| || | |||||||||||||||||||| | ||||| |
|
|
| T |
36220910 |
cttatgcttttgagcaagcttctcgtgcctaccgtgtgtatgatgatctccaagggatcaaagacactttgtcaattgtcagaggtctactattggatgc |
36221009 |
T |
|
| Q |
139 |
tgaggagaagaagaaccggcaacatgccttgtgtgaatggttaaggcagattcaaaacatctgctatgatgctgaagatgtattggatggatttgagttg |
238 |
Q |
| |
|
|||||||||||||||| |||||||| || |||||||||| |||||| | |||||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
36221010 |
cgaggagaagaagaaccaacaacatgctctgcgtgaatggttgaggcaggtacaaaacatctgctatgatgctgaa---------gatggatttgagttg |
36221100 |
T |
|
| Q |
239 |
caagac-aggagaaagcaatttgttgaagcttctggaagcacacggttgaaggtatgccacttcttttcttcctctaatccgcttgctttccgttttagg |
337 |
Q |
| |
|
|||||| || | ||| || |||| |||||||||| ||||| || |||||||||||||||| ||||||||||| ||||| || ||||||||||||||| |
|
|
| T |
36221101 |
caagacaagaaaaaataaaattgtgaaagcttctggcagcactcgaatgaaggtatgccacttgttttcttcctcaaatccactagctttccgttttagg |
36221200 |
T |
|
| Q |
338 |
atgtcacgtcaaatcaaagagattagagatagattggataaagtggcagctgatgggaccaagtttggtcttgt |
411 |
Q |
| |
|
||||||| | |||||||||||||||||||||||||| |||| ||||||||||| ||||| | |||||| ||||| |
|
|
| T |
36221201 |
atgtcacataaaatcaaagagattagagatagattgaataaggtggcagctgacgggacaaggtttggacttgt |
36221274 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 133; E-Value: 5e-69
Query Start/End: Original strand, 9 - 409
Target Start/End: Complemental strand, 35947588 - 35947188
Alignment:
| Q |
9 |
ttgctaattcactgttagggaaacttgcttcttatgcttatgaagaagcctctcgtgcctacggtgtatatgaagatctccaatggatcaaagataccct |
108 |
Q |
| |
|
|||||||||| || ||||||| ||| |||||||| |||||||||| | ||||||||||| ||||| |||||| |||| ||||| | | ||| || || |
|
|
| T |
35947588 |
ttgctaattctctcctagggaagtttgtttcttatggttatgaagaaacttctcgtgcctatggtgtgtatgaacatctacaatgtttgagagacactct |
35947489 |
T |
|
| Q |
109 |
atcaattgtcagaggtctactgctagatgctgaggagaagaagaaccggcaacatgccttgtgtgaatggttaaggcagattcaaaacatctgctatgat |
208 |
Q |
| |
|
|||||||||| ||| || || | ||||||||| |||||| ||| | |||| || | |||||| | ||||||||||| || || ||| ||||| |
|
|
| T |
35947488 |
ggcaattgtcagtggtgtattgttggatgctgagcgcaagaaggaccaaaagcatgggctgcgggaatggctgaggcagattcagaatatttgccatgat |
35947389 |
T |
|
| Q |
209 |
gctgaagatgtattggatggatttgagttgcaagacaggagaaagcaatttgttgaagcttctggaagcacacggttgaaggtatgccacttcttttctt |
308 |
Q |
| |
|
|||||||||||||||||||||||| | |||||||||| | |||||||| |||| |||||||| ||||||||||| ||||| || |||||||||||||| |
|
|
| T |
35947388 |
gctgaagatgtattggatggatttaacttgcaagacaagcgaaagcaagttgtgaaagcttctcgaagcacacgggtgaagttagtccacttcttttctt |
35947289 |
T |
|
| Q |
309 |
cctctaatccgcttgctttccgttttaggatgtcacgtcaaatcaaagagattagagatagattggataaagtggcagctgatgggaccaagtttggtct |
408 |
Q |
| |
|
|||||||||| |||| ||| |||||||||||| |||||||||||||||||||||| |||||| ||||||| ||||||||||||||| || ||||||||| |
|
|
| T |
35947288 |
cctctaatccacttgtttttcgttttaggatggcacgtcaaatcaaagagattagggatagaatggataaggtggcagctgatggggtcaggtttggtct |
35947189 |
T |
|
| Q |
409 |
t |
409 |
Q |
| |
|
| |
|
|
| T |
35947188 |
t |
35947188 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 122; E-Value: 2e-62
Query Start/End: Original strand, 37 - 410
Target Start/End: Complemental strand, 36226667 - 36226294
Alignment:
| Q |
37 |
ttcttatgcttatgaagaagcctctcgtgcctacggtgtatatgaagatctccaatggatcaaagataccctatcaattgtcagaggtctactgctagat |
136 |
Q |
| |
|
|||||||| || ||||||||| ||||| ||||| ||||| ||||||||||||||| |||||||||| || | ||||||| |||||||| || | ||| |
|
|
| T |
36226667 |
ttcttatgtttgtgaagaagcttctcgagcctatggtgtgtatgaagatctccaacggatcaaagacactttggcaattgttagaggtcttctattggat |
36226568 |
T |
|
| Q |
137 |
gctgaggagaagaagaaccggcaacatgccttgtgtgaatggttaaggcagattcaaaacatctgctatgatgctgaagatgtattggatggatttgagt |
236 |
Q |
| |
|
|||||| | |||||| ||| | |||| |||||||||| | |||||||||||| |||| |||| |||||||||| ||||| ||||||||||||| | |
|
|
| T |
36226567 |
gctgagcacaagaaggaccagaggcatgggcagtgtgaatggctgaggcagattcaatacatttgctctgatgctgaatatgtactggatggatttgaat |
36226468 |
T |
|
| Q |
237 |
tgcaagacaggagaaagcaatttgttgaagcttctggaagcacacggttgaaggtatgccacttcttttcttcctctaatccgcttgctttccgttttag |
336 |
Q |
| |
|
| ||||||| |||||||| |||| |||||||| | ||||| || |||||||| |||| || ||||||||||||| ||| |||||||||||||||| |
|
|
| T |
36226467 |
ttcaagacaaacgaaagcaagttgtggaagcttcatgcagcactaggatgaaggtacgccaatttttttcttcctctagtccacttgctttccgttttaa |
36226368 |
T |
|
| Q |
337 |
gatgtcacgtcaaatcaaagagattagagatagattggataaagtggcagctgatgggaccaagtttggtcttg |
410 |
Q |
| |
|
|||| || ||| ||||||||||||||| ||||||||| |||| ||||||||||||||||| | |||||| |||| |
|
|
| T |
36226367 |
gatggcatgtcgaatcaaagagattagggatagattgaataaggtggcagctgatgggactaggtttggacttg |
36226294 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 173 - 405
Target Start/End: Complemental strand, 35982652 - 35982420
Alignment:
| Q |
173 |
gaatggttaaggcagattcaaaacatctgctatgatgctgaagatgtattggatggatttgagttgcaagacaggagaaagcaatttgttgaagcttctg |
272 |
Q |
| |
|
|||||| | |||||||||||| ||| |||| |||||||||||||||||| ||||||||||||| ||||||| |||||||| ||||||||||||||| |
|
|
| T |
35982652 |
gaatggctgaggcagattcaatgcatttgctctgatgctgaagatgtattcaatggatttgagtttcaagacaaacgaaagcaagttgttgaagcttctg |
35982553 |
T |
|
| Q |
273 |
gaagcacacggttgaaggtatgccacttcttttcttcctctaatccgcttgctttccgttttaggatgtcacgtcaaatcaaagagattagagatagatt |
372 |
Q |
| |
|
| ||||| ||| ||||||| ||||||||||||||||||||||||| |||||||| ||| |||||||| ||| || ||||||||| ||||| ||||||| |
|
|
| T |
35982552 |
gcagcactcggacgaaggtacgccacttcttttcttcctctaatccacttgcttttcgtcttaggatggcacatcgaatcaaagaaattaggaatagatt |
35982453 |
T |
|
| Q |
373 |
ggataaagtggcagctgatgggaccaagtttgg |
405 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| |
|
|
| T |
35982452 |
agataaggtggcagctgatgggactaagtttgg |
35982420 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 113; E-Value: 4e-57
Query Start/End: Original strand, 173 - 405
Target Start/End: Complemental strand, 36004064 - 36003832
Alignment:
| Q |
173 |
gaatggttaaggcagattcaaaacatctgctatgatgctgaagatgtattggatggatttgagttgcaagacaggagaaagcaatttgttgaagcttctg |
272 |
Q |
| |
|
|||||| | |||||||||||| ||| |||| |||||||||||||||||| ||||||||||||| ||||||| |||||||| ||||||||||||||| |
|
|
| T |
36004064 |
gaatggctgaggcagattcaatgcatttgctctgatgctgaagatgtattcaatggatttgagtttcaagacaaacgaaagcaagttgttgaagcttctg |
36003965 |
T |
|
| Q |
273 |
gaagcacacggttgaaggtatgccacttcttttcttcctctaatccgcttgctttccgttttaggatgtcacgtcaaatcaaagagattagagatagatt |
372 |
Q |
| |
|
| ||||| ||| ||||||| ||||||||||||||||||||||||| |||||||| ||| |||||||| ||| || ||||||||| ||||| ||||||| |
|
|
| T |
36003964 |
gcagcactcggacgaaggtacgccacttcttttcttcctctaatccacttgcttttcgtcttaggatggcacatcgaatcaaagaaattaggaatagatt |
36003865 |
T |
|
| Q |
373 |
ggataaagtggcagctgatgggaccaagtttgg |
405 |
Q |
| |
|
||||| ||||||||||||||||| |||||||| |
|
|
| T |
36003864 |
agataaggtggcagctgatgggactaagtttgg |
36003832 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 9 - 410
Target Start/End: Complemental strand, 35974114 - 35973713
Alignment:
| Q |
9 |
ttgctaattcactgttagggaaacttgcttcttatgcttatgaagaagcctctcgtgcctacggtgtatatgaagatctccaatggatcaaagataccct |
108 |
Q |
| |
|
||||| |||| ||| ||||||| |||||||||||||| ||||| || || ||||| | || ||||| ||||| ||||| ||| |||||| | || | |
|
|
| T |
35974114 |
ttgctgattctctgctagggaagcttgcttcttatgcctatgacgaggcttctcgaacttatggtgtgtatgatgatctacaagatatcaaaaacacttt |
35974015 |
T |
|
| Q |
109 |
atcaattgtcagaggtctactgctagatgctgaggagaagaagaaccggcaacatgccttgtgtgaatggttaaggcagattcaaaacatctgctatgat |
208 |
Q |
| |
|
|||||||||| |||||| ||| | ||||||||| | |||||| ||| | |||| || |||||||| | |||||||||||||||||||||| ||| |
|
|
| T |
35974014 |
ttcaattgtcataggtcttctgttggatgctgagtataagaaggaccaaaagcatgggctgcgtgaatggctgaggcagattcaaaacatctgctccgat |
35973915 |
T |
|
| Q |
209 |
gctgaagatgtattggatggatttgagttgcaagacaggagaaagcaatttgttgaagcttctggaagcacacggttgaaggtatgccacttcttttctt |
308 |
Q |
| |
|
|||||||||||||| ||||||||||| | ||| ||| | | || ||||||| || |||||||| ||||| | |||||||| || |||||||||| | |
|
|
| T |
35973914 |
gctgaagatgtatttgatggatttgaactccaacacaagcggaaaaaatttgtggatgcttctggcagcacgagcatgaaggtaagctacttcttttcct |
35973815 |
T |
|
| Q |
309 |
cctctaatccgcttgctttccgttttaggatgtcacgtcaaatcaaagagattagagatagattggataaagtggcagctgatgggaccaagtttggtct |
408 |
Q |
| |
|
|||| ||||| |||| |||||||| ||| ||| | ||| ||||||| ||| | ||||| |||||||| || ||||| ||||||| |||||||||||| |
|
|
| T |
35973814 |
cctccaatccacttgttttccgttctagaatggaccatcagatcaaaggcattcgggataggttggataaggtagcagccgatgggaacaagtttggtct |
35973715 |
T |
|
| Q |
409 |
tg |
410 |
Q |
| |
|
|| |
|
|
| T |
35973714 |
tg |
35973713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #11
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 9 - 410
Target Start/End: Complemental strand, 35995526 - 35995125
Alignment:
| Q |
9 |
ttgctaattcactgttagggaaacttgcttcttatgcttatgaagaagcctctcgtgcctacggtgtatatgaagatctccaatggatcaaagataccct |
108 |
Q |
| |
|
||||| |||| ||| ||||||| |||||||||||||| ||||| || || ||||| | || ||||| ||||| ||||| ||| |||||| | || | |
|
|
| T |
35995526 |
ttgctgattctctgctagggaagcttgcttcttatgcctatgacgaggcttctcgaacttatggtgtgtatgatgatctacaagatatcaaaaacacttt |
35995427 |
T |
|
| Q |
109 |
atcaattgtcagaggtctactgctagatgctgaggagaagaagaaccggcaacatgccttgtgtgaatggttaaggcagattcaaaacatctgctatgat |
208 |
Q |
| |
|
|||||||||| |||||| ||| | ||||||||| | |||||| ||| | |||| || |||||||| | |||||||||||||||||||||| ||| |
|
|
| T |
35995426 |
ttcaattgtcataggtcttctgttggatgctgagtataagaaggaccaaaagcatgggctgcgtgaatggctgaggcagattcaaaacatctgctccgat |
35995327 |
T |
|
| Q |
209 |
gctgaagatgtattggatggatttgagttgcaagacaggagaaagcaatttgttgaagcttctggaagcacacggttgaaggtatgccacttcttttctt |
308 |
Q |
| |
|
|||||||||||||| ||||||||||| | ||| ||| | | || ||||||| || |||||||| ||||| | |||||||| || |||||||||| | |
|
|
| T |
35995326 |
gctgaagatgtatttgatggatttgaactccaacacaagcggaaaaaatttgtggatgcttctggcagcacgagcatgaaggtaagctacttcttttcct |
35995227 |
T |
|
| Q |
309 |
cctctaatccgcttgctttccgttttaggatgtcacgtcaaatcaaagagattagagatagattggataaagtggcagctgatgggaccaagtttggtct |
408 |
Q |
| |
|
|||| ||||| |||| |||||||| ||| ||| | ||| ||||||| ||| | ||||| |||||||| || ||||| ||||||| |||||||||||| |
|
|
| T |
35995226 |
cctccaatccacttgttttccgttctagaatggaccatcagatcaaaggcattcgggataggttggataaggtagcagccgatgggaacaagtttggtct |
35995127 |
T |
|
| Q |
409 |
tg |
410 |
Q |
| |
|
|| |
|
|
| T |
35995126 |
tg |
35995125 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #12
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 171 - 300
Target Start/End: Complemental strand, 35926370 - 35926238
Alignment:
| Q |
171 |
gtgaatggttaaggcagattcaaaacatctgctatgatgctgaagatgtattggatggattt---gagttgcaagacaggagaaagcaatttgttgaagc |
267 |
Q |
| |
|
|||||||| | |||||||||||||| || ||||||||||||||||||||| ||||||||||| || |||||||||| | |||||||| | || |||| |
|
|
| T |
35926370 |
gtgaatggctgaggcagattcaaaatatatgctatgatgctgaagatgtaatggatggatttgacgacttgcaagacaagcgaaagcaagtggtcaaagc |
35926271 |
T |
|
| Q |
268 |
ttctggaagcacacggttgaaggtatgccactt |
300 |
Q |
| |
|
|||||| ||||||| | |||||||| ||||||| |
|
|
| T |
35926270 |
ttctggtagcacactggtgaaggtacgccactt |
35926238 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 15 - 88
Target Start/End: Complemental strand, 35931036 - 35930963
Alignment:
| Q |
15 |
attcactgttagggaaacttgcttcttatgcttatgaagaagcctctcgtgcctacggtgtatatgaagatctc |
88 |
Q |
| |
|
||||||| ||||| |||||||| |||||||||||||||||||| ||||||||||| | ||| ||| |||||||| |
|
|
| T |
35931036 |
attcactattaggaaaacttgcatcttatgcttatgaagaagcttctcgtgcctatgatgtgtataaagatctc |
35930963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 35982810 - 35982699
Alignment:
| Q |
15 |
attcactgttagggaaacttgcttcttatgcttatgaagaagcctctcgtgcctacggtgtatatgaagatctccaatggatcaaagataccctatcaat |
114 |
Q |
| |
|
|||||||| | || || ||| |||| |||||||||||||| | ||| | ||||| ||||| ||||||||| ||||| ||||||||||||| | |||| |
|
|
| T |
35982810 |
attcactgcttggaaagcttacttcctatgcttatgaagaggtttctggagcctatggtgtgtatgaagatttccaacggatcaaagatactttggcaat |
35982711 |
T |
|
| Q |
115 |
tgtcagaggtct |
126 |
Q |
| |
|
||| |||||||| |
|
|
| T |
35982710 |
tgttagaggtct |
35982699 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #15
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 15 - 126
Target Start/End: Complemental strand, 36004222 - 36004111
Alignment:
| Q |
15 |
attcactgttagggaaacttgcttcttatgcttatgaagaagcctctcgtgcctacggtgtatatgaagatctccaatggatcaaagataccctatcaat |
114 |
Q |
| |
|
|||||||| | || || ||| |||| |||||||||||||| | ||| | ||||| ||||| ||||||||| ||||| ||||||||||||| | |||| |
|
|
| T |
36004222 |
attcactgcttggaaagcttacttcctatgcttatgaagaggtttctggagcctatggtgtgtatgaagatttccaacggatcaaagatactttggcaat |
36004123 |
T |
|
| Q |
115 |
tgtcagaggtct |
126 |
Q |
| |
|
||| |||||||| |
|
|
| T |
36004122 |
tgttagaggtct |
36004111 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 182 - 410
Target Start/End: Complemental strand, 18126334 - 18126106
Alignment:
| Q |
182 |
aggcagattcaaaacatctgctatgatgctgaagatgtattggatggatttgagttgcaagacaggagaaagcaatttgttgaagcttctggaagcacac |
281 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||||||||| ||||||| | ||| ||| | |||||||| || | ||||||| | || | |
|
|
| T |
18126334 |
aggcagatacaaaatatctgctatgatgctgaagatgtattggaaaaatttgagctccaacacaagcgaaagcaagttctcaaagcttcgtgtagtaata |
18126235 |
T |
|
| Q |
282 |
ggttgaaggtatgccacttcttttcttcctctaatccgcttgctttccgttttaggatgtcacgtcaaatcaaagagattagagatagattggataaagt |
381 |
Q |
| |
|
| |||||||| |||||||||| | |||||| ||| | |||||||| ||| |||||||| || ||||| ||||| ||||| |||||||||||||| || |
|
|
| T |
18126234 |
gaatgaaggtacgccacttcttctgttcctccaattcacttgcttttcgtcttaggatggcaaaacaaattaaagatattagggatagattggataaggt |
18126135 |
T |
|
| Q |
382 |
ggcagctgatgggaccaagtttggtcttg |
410 |
Q |
| |
|
||| | |||||||| |||||||| |||| |
|
|
| T |
18126134 |
agcaaccgatgggactaagtttggacttg |
18126106 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 360 - 410
Target Start/End: Original strand, 26328349 - 26328399
Alignment:
| Q |
360 |
ttagagatagattggataaagtggcagctgatgggaccaagtttggtcttg |
410 |
Q |
| |
|
||||||||||||||||||| || | ||||||||||| ||||||||||||| |
|
|
| T |
26328349 |
ttagagatagattggataaggtagtagctgatgggaataagtttggtcttg |
26328399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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